Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g054190.3.1
CDS Infomation

ABC1 protein (AHRD V3.3 *** D2XP29_MAIZE)
Sequence

ATGGCGAGTATTTCAGCTACACTTTCAACTGCAACTTTACCGGAACTCAAATTTCTATCT
CCGATTTCCACTTCCAGAAGTTTCCGTTTCCGTATACCTCAGCGGAGTAGAATTAAGGCG
GCGTCGGGTAAGAGAGAAGATAACGTGGTGTTGGAGGAGAGAGATGCGGAATTGTTGAGG
AAAGTGAATGGGAGTGTGAATGGGAATGGGAGTGTGAAGAGGAGTGTTGATTTGAATGGT
GCGTTGTTGGTGGATAAGTATAGTAATGGAAGTGTAGGTGTGATTGAGAGTGAAAATGGA
AGTTTGATGAAGTATGTGAATGGAAATGGTGTAGCGGGGAAGAGTGCGGAGAAGGTTGTG
GAGGTGAAGGCAGAAGAAGTGGTTGAGAAGAGGAATAAGAAGAGTATTGATGAGATAGGA
CAAGAGGAGGCTTGGTTTAAGAAGAATAAGGAAGTTAAGGTCTCTGTACCGCCTGGAGGC
CGTTGGAACAGATTCAAAACATATTCAACTATTCAAAGGACTTTAGAGATATGGGGATCT
GTCTTCACTTTCTTATTCAAGGCTTGGTTGAATAATCAAAAGTTCTCCTATCAAGGTGGA
ATGACAGAAGCAAAAAAAACTGAGCGGAGAAAGGTCCTTGCTAAGTGGTTAAAAGAAACT
ATTTTGAGATTGGGTCCAACTTTTATCAAGATTGGCCAGCAATTCTCAACAAGAGTGGAT
ATTCTTGCTCAGGAGTATGTTGATCAGTTGTCTGAGCTTCAGGACCAAGTTCCTCCTTTC
CCATCTGAAACTGCTGTATCCATAGTTGAAGAAGAACTTGGCGGCTCATTGGATAATATA
TTTGAAAGATTTGACCGTGAACCAATAGCTGCTGCAAGTCTTGGTCAGGTGCATCGTGCA
AGACTGAATGGGCAGGAAGTAGTTGTCAAAGTACAAAGGCCCGGTCTTAAGGATCTTTTT
GATATCGATCTTAAAAACCTGAGGGTGATAGCTGAATATCTGCAGAAAATAGATCCTAAA
TCTGACGGTGCGAAAAGAGATTGGGTTGCAATCTATGATGAATGTGCAAGTGTCTTGTAT
CAGGAGATTGATTACACTAAGGAAGCTGCCAATGCGGAACTGTTTGCAAGTAACTTCAAA
AACCTAGATTATGTGAAAGTCCCATCGATATACTGGGAATATACCACACCACAGGTTTTG
ACAATGGAGTATGTCCCAGGCATTAAAATAAACAGGATTCAAGCCTTAGATCAATTGGGC
GTTGATAGGAAAAGGTTAGGGCGGTATGCGGTTGAATCCTATCTGGAGCAAATTCTGTCT
CATGGTTTCTTTCATGCTGATCCACATCCTGGAAATATAGCTGTGGATGATGTTAATGGT
GGAAGGTTGATCTTTTATGATTTTGGAATGATGGGAAGCATAAGTCCTAATATCAGAGAA
GGCTTGCTGGAAACGTTCTATGGAGTTTATGAGAAAGATCCAGATAAGGTCCTGCAAGCA
AGTATTCAAATGGGTATTCTGGTTCCTACTGGCGACATGACTGCTGTCAGACGAACTGCA
CAGTTTTTCCTTAATAGCTTTGAAGAGCGCCTTGCAGCACAAAGAAAGGAGAGAGAAATG
GCACAAGCAGAACTTGGGTTCAAAAAGCCATTGACCAAGGAGGAACTAAAGGAGAAAAAG
AAGCAACGTTTGGCTGCAATTGGTGAAGATCTACTAGCCATTGCAGCAGATCAGCCATTC
CGATTTCCTGCCACATTTACTTTTGTGGTTAGAGCATTTTCAGTTTTGGATGGCATTGGG
AAGGGTCTTGATCCACGATTTGATATCACTGAGATAGCCAAACCCTATGCCCTAGAGTTG
CTTAGGTTTCGTGAAGCTGGTATTGAAGTCGCGGTAAAGGACTTCAGGAAGAGATGGGAC
AGACAGTCTCAGGCATTCTACAACTTGTTCAGGCAGGCTGATAGAGTTGAGAAACTTGCT
GCAATTATCCAGCGACTGGAGCAAGGTGACCTTAAGCTTCGGGTTAGAGCTTTAGAATCT
GAAAGGGCTTTCCAACGTGTTGCTGCTGTTCAGAAGACAATTGGAAGTGGAGTAGCCGCT
GGAAGCTTGGTTAACCTAGCTACAATTTTGTATCTCAACTCCGTCCGTATCCCCTCTATT
ATAGCGTACACTGCCTGTGCATTCTTTGGCTTCCAAGTCCTGTTTGGCCTTCTGAAGGTT
AAAAAATTAGATGAACGAGAAAGATTGATTACTGGAACAGCTTGA

Peptide Sequence

PEP ID

Solyc04g054190.3.1
PEP Infomation

ABC1 protein (AHRD V3.3 *** D2XP29_MAIZE)
Sequence

MASISATLSTATLPELKFLSPISTSRSFRFRIPQRSRIKAASGKREDNVVLEERDAELLR
KVNGSVNGNGSVKRSVDLNGALLVDKYSNGSVGVIESENGSLMKYVNGNGVAGKSAEKVV
EVKAEEVVEKRNKKSIDEIGQEEAWFKKNKEVKVSVPPGGRWNRFKTYSTIQRTLEIWGS
VFTFLFKAWLNNQKFSYQGGMTEAKKTERRKVLAKWLKETILRLGPTFIKIGQQFSTRVD
ILAQEYVDQLSELQDQVPPFPSETAVSIVEEELGGSLDNIFERFDREPIAAASLGQVHRA
RLNGQEVVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLY
QEIDYTKEAANAELFASNFKNLDYVKVPSIYWEYTTPQVLTMEYVPGIKINRIQALDQLG
VDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIRE
GLLETFYGVYEKDPDKVLQASIQMGILVPTGDMTAVRRTAQFFLNSFEERLAAQRKEREM
AQAELGFKKPLTKEELKEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIG
KGLDPRFDITEIAKPYALELLRFREAGIEVAVKDFRKRWDRQSQAFYNLFRQADRVEKLA
AIIQRLEQGDLKLRVRALESERAFQRVAAVQKTIGSGVAAGSLVNLATILYLNSVRIPSI
IAYTACAFFGFQVLFGLLKVKKLDERERLITGTA*

Transcript Sequence

Transcript ID

Solyc04g054190.3.1
Transcript Infomation

ABC1 protein (AHRD V3.3 *** D2XP29_MAIZE)
Sequence

GGGTATCTATACATAGGTAGGGTAGACCAATTAGGTTTCTTACATTATTACACATGTATT
ATTTCATAACAACAATGTATTCCATATTCAAATGAATTATTGGTCTTTCTCTGGTGCTAA
ATCGATAAATAAGCCATACACAAGTTGAACACATCAATAATAAAATTTGATTTCTAACAT
TATCCAACAAAAATAAAAAACATCCATTTCCTCTTTTATTGAAGTCATAAAATAAGTTCT
AATCGAATTTGAAACAAAAAAAAAGAGTTTTTCTTTAGTTGGTTAGGGTCTAAATAAGTC
TAGAGGGGTAAAATAACATGTGAGATAATTTTTTTAAAACATGTAATATTTTTGAAATTA
AAAAAGCAAGTTTTTTTTTAAGAAAATATATTCATTTGGAGAAAATACACATGTCCATTA
TTAAATGATAAATATATATATAAAATATTATTTTTAACGAAAATATAGTCGTCTCTAAGT
AATAAAGCTGAAAGTTATATTTGATCACTTTTTTTTTTCCTAAGATGAACGACAATAGAT
ACGGTGAGAATTCCATCCATAAGGCTAATACTTAACGAGAGGCAATTGACCAATCAAATT
TCTCCATATTCTCCCCACACCTATCTCTCTTGTGACGTGGCATCTCTTCTACCATATAAT
ATAATTTCCTTCTACTTGTTATATTCATATATAATATAATATTAATAATTCCTATTTTTC
TCCGCCATTAACTTCCCCTTCTCCTTCACAAGTTCCATAAATTCTCTCTAAGCTTATGGC
AACTCAGTTCTAGAATCTTCTATAACTCAATCTCTATATCTGCTGCTACTTCGACGAAAA
TGGCGAGTATTTCAGCTACACTTTCAACTGCAACTTTACCGGAACTCAAATTTCTATCTC
CGATTTCCACTTCCAGAAGTTTCCGTTTCCGTATACCTCAGCGGAGTAGAATTAAGGCGG
CGTCGGGTAAGAGAGAAGATAACGTGGTGTTGGAGGAGAGAGATGCGGAATTGTTGAGGA
AAGTGAATGGGAGTGTGAATGGGAATGGGAGTGTGAAGAGGAGTGTTGATTTGAATGGTG
CGTTGTTGGTGGATAAGTATAGTAATGGAAGTGTAGGTGTGATTGAGAGTGAAAATGGAA
GTTTGATGAAGTATGTGAATGGAAATGGTGTAGCGGGGAAGAGTGCGGAGAAGGTTGTGG
AGGTGAAGGCAGAAGAAGTGGTTGAGAAGAGGAATAAGAAGAGTATTGATGAGATAGGAC
AAGAGGAGGCTTGGTTTAAGAAGAATAAGGAAGTTAAGGTCTCTGTACCGCCTGGAGGCC
GTTGGAACAGATTCAAAACATATTCAACTATTCAAAGGACTTTAGAGATATGGGGATCTG
TCTTCACTTTCTTATTCAAGGCTTGGTTGAATAATCAAAAGTTCTCCTATCAAGGTGGAA
TGACAGAAGCAAAAAAAACTGAGCGGAGAAAGGTCCTTGCTAAGTGGTTAAAAGAAACTA
TTTTGAGATTGGGTCCAACTTTTATCAAGATTGGCCAGCAATTCTCAACAAGAGTGGATA
TTCTTGCTCAGGAGTATGTTGATCAGTTGTCTGAGCTTCAGGACCAAGTTCCTCCTTTCC
CATCTGAAACTGCTGTATCCATAGTTGAAGAAGAACTTGGCGGCTCATTGGATAATATAT
TTGAAAGATTTGACCGTGAACCAATAGCTGCTGCAAGTCTTGGTCAGGTGCATCGTGCAA
GACTGAATGGGCAGGAAGTAGTTGTCAAAGTACAAAGGCCCGGTCTTAAGGATCTTTTTG
ATATCGATCTTAAAAACCTGAGGGTGATAGCTGAATATCTGCAGAAAATAGATCCTAAAT
CTGACGGTGCGAAAAGAGATTGGGTTGCAATCTATGATGAATGTGCAAGTGTCTTGTATC
AGGAGATTGATTACACTAAGGAAGCTGCCAATGCGGAACTGTTTGCAAGTAACTTCAAAA
ACCTAGATTATGTGAAAGTCCCATCGATATACTGGGAATATACCACACCACAGGTTTTGA
CAATGGAGTATGTCCCAGGCATTAAAATAAACAGGATTCAAGCCTTAGATCAATTGGGCG
TTGATAGGAAAAGGTTAGGGCGGTATGCGGTTGAATCCTATCTGGAGCAAATTCTGTCTC
ATGGTTTCTTTCATGCTGATCCACATCCTGGAAATATAGCTGTGGATGATGTTAATGGTG
GAAGGTTGATCTTTTATGATTTTGGAATGATGGGAAGCATAAGTCCTAATATCAGAGAAG
GCTTGCTGGAAACGTTCTATGGAGTTTATGAGAAAGATCCAGATAAGGTCCTGCAAGCAA
GTATTCAAATGGGTATTCTGGTTCCTACTGGCGACATGACTGCTGTCAGACGAACTGCAC
AGTTTTTCCTTAATAGCTTTGAAGAGCGCCTTGCAGCACAAAGAAAGGAGAGAGAAATGG
CACAAGCAGAACTTGGGTTCAAAAAGCCATTGACCAAGGAGGAACTAAAGGAGAAAAAGA
AGCAACGTTTGGCTGCAATTGGTGAAGATCTACTAGCCATTGCAGCAGATCAGCCATTCC
GATTTCCTGCCACATTTACTTTTGTGGTTAGAGCATTTTCAGTTTTGGATGGCATTGGGA
AGGGTCTTGATCCACGATTTGATATCACTGAGATAGCCAAACCCTATGCCCTAGAGTTGC
TTAGGTTTCGTGAAGCTGGTATTGAAGTCGCGGTAAAGGACTTCAGGAAGAGATGGGACA
GACAGTCTCAGGCATTCTACAACTTGTTCAGGCAGGCTGATAGAGTTGAGAAACTTGCTG
CAATTATCCAGCGACTGGAGCAAGGTGACCTTAAGCTTCGGGTTAGAGCTTTAGAATCTG
AAAGGGCTTTCCAACGTGTTGCTGCTGTTCAGAAGACAATTGGAAGTGGAGTAGCCGCTG
GAAGCTTGGTTAACCTAGCTACAATTTTGTATCTCAACTCCGTCCGTATCCCCTCTATTA
TAGCGTACACTGCCTGTGCATTCTTTGGCTTCCAAGTCCTGTTTGGCCTTCTGAAGGTTA
AAAAATTAGATGAACGAGAAAGATTGATTACTGGAACAGCTTGAACAAATGGAACAGCTT
GAACAAATGTACAGGTTATGCTGTGATATAATATATGGGAACTGCTATTCCAAGCTGTAA
CCCTGGAAAAAACAAAAATAACATGGAGGGGACTTAACGGATCATTGAGGATTCATAGCA
CTCCCATGGCCAAGAGTTGCCAGTTTTGTCATTCAGCTTTAAGATGCATCATGTGGTAAG
GCTTCCAATATGGAGTTTAACTTCTAATTATGTTGGCCAAAACAGATTGTTGTATTTCGC
CATCTCCACTATAGAGCAGTCCTGTGAAGTAGTCCAAATAAGAAATATCTTTCATGTAGT
ATGACACCCATTTTGACCTTCTGTAGCCTTAGTGTATAGGTATACAAAATCTAGGAGATA
AATGTAACTAATTTTAGCCCTATCTATCTTCAATTTTATTTGTGGAGTTCGATTCTCTTG
TATTTCTGTATATTATACGATGTGAACTTCTATTTATTGTAAAATCAGTGCCATACGAGT
TTCCTAGGGATCAAATATGTCATTGAGCTAACCCTTCTTTGTATTAGTCCTCTGTATGTG
TATTGATATATCAAGTCTTCTTAGACTATTCAGTCTACTGACCTGTCCTATGCACTTTGT
ATGTTGAATTATTATAAAGCTGAGGATTTTGCCGCGTTGCTTCATTTTAATCTTCTG