Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g050930.3.1
CDS Infomation

violaxanthin de-epoxidase
Sequence

ATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTT
GGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGT
ATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCT
AGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAAT
CTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAGGGAAATACAATATGGAAATTT
CCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATT
GTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACT
TGTACTTGCTTACTGAAAGAGTGCAGGATAGAGCTTGCGAAGTGCATCTCAAACCCTGCA
TGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGT
CAGATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCA
GTCTCCCGGAAGAAATGTGTACCTCGTAAATCTGATGTTGGTGACTTTCCTGTGCCTGAT
CCCAGTGTTCTCGTCCAAAAGTTTGACATGAATGATTTTATTGGAAAATGGTACATCACT
CGCGGTTTGAATCCCACATTTGATGTTTTTGATTGTCAATTGCATGAGTTCCATACAGAA
GGAAACAAACTTGTGGGAAGTCTGACTTGGAGAATAGGGACACCTGATGGAGGATTTTTC
ACTCGATCCGCAGTGCAAAAATTCGTGCAAGATCCAAAGTATCCCGGGATACTCTACAAT
CATGATAATGAGTATCTTCACTACCAAGATGACTGGTATATTTTGTCATCCAAAGTTGAA
AACAGTCCAGATGATTACATATTTGTGTACTATAAGGGCAGAAATGATGCATGGGATGGA
TATGGTGGTTCTGTACTTTATACTAGAAGCTCCGTTTTGCCTGAAACGATTATACCTGAG
TTGCAAATTGCAGCTCAAAAAGTTGGTCGTGATTTCAACACTTTCATAAAAACAGACAAT
ACTTGTGGCCCTGAGCCACCCCTTGTTGAACGGTTAGAGAAGAAAGTGGAAGAAGGAGAG
CGGACAATCATAAAAGAAGTCGAGGAAATAGAAGAAGAAGTCGAGAAGGTGAAGGAAAAA
GAAGTCAGCTTATTCAGTAGACTGTTCGAAGGTTTCAAAGAGCTGCAACAAGATGAAGAA
AACTTTATAAGAGAGCTCAGCAAAGAAGAAATGGATATTTTGGATGGACTTAAAATGGAA
GCAACTGAAGTAGAAAAACTCTTTGGAAATGCATTACCAATAAGGAAATTAAGGTAA

Peptide Sequence

PEP ID

Solyc04g050930.3.1
PEP Infomation

violaxanthin de-epoxidase
Sequence

MALAPHSNILCNHEAIKCQVGSRLQSHTRFSWGRADYFGSIVLVKICSRRQIPTYLQKSS
RICCGLDSRSLQLSSRGKQNLSSAHRINQNVPKGNTIWKFPEDVALMVLKKWGQLAKTAI
VTIFILSVASKADAVDALKTCTCLLKECRIELAKCISNPACAANVACLQTCNNRPDETEC
QIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGDFPVPDPSVLVQKFDMNDFIGKWYIT
RGLNPTFDVFDCQLHEFHTEGNKLVGSLTWRIGTPDGGFFTRSAVQKFVQDPKYPGILYN
HDNEYLHYQDDWYILSSKVENSPDDYIFVYYKGRNDAWDGYGGSVLYTRSSVLPETIIPE
LQIAAQKVGRDFNTFIKTDNTCGPEPPLVERLEKKVEEGERTIIKEVEEIEEEVEKVKEK
EVSLFSRLFEGFKELQQDEENFIRELSKEEMDILDGLKMEATEVEKLFGNALPIRKLR*

Transcript Sequence

Transcript ID

Solyc04g050930.3.1
Transcript Infomation

violaxanthin de-epoxidase
Sequence

TTTTCGGGGATCAAAAATGTCAAATATTTGCATAGATAGGGGATTATTTTTGCTAAGTGG
TAAACATTAAGGACCATAGTTGTCCAAGCCCCTATGCATTCGATCATTTTTTTTGGGCAA
TTGCCAAAACCATCCAAAAGGAGAAGAAAATGAAAAAAGAGAGGAAGTGCAGAAACAAGA
AAATGTGGTGACGTTGCTAAGCTAATTATCACAAAATGTCTTATCCCCCTTCATCCATTT
CCCCTTCACTCAACTCTTTCACACTTAAAACACCCAAAAATTCAGAAGAAGAAAAAAAAA
GATGCAAAATCCACAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTA
CATGAGGTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACA
TTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAA
GATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCA
GAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTA
GAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACC
AGAATGTACCTAAGGGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCT
TGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTG
CTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCA
GGATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTGCAGCTAATGTTGCCTGTCTCC
AAACATGCAACAATAGACCTGATGAAACGGAATGTCAGATAAAATGTGGTGATTTGTTTG
AAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGTCTCCCGGAAGAAATGTGTACCTC
GTAAATCTGATGTTGGTGACTTTCCTGTGCCTGATCCCAGTGTTCTCGTCCAAAAGTTTG
ACATGAATGATTTTATTGGAAAATGGTACATCACTCGCGGTTTGAATCCCACATTTGATG
TTTTTGATTGTCAATTGCATGAGTTCCATACAGAAGGAAACAAACTTGTGGGAAGTCTGA
CTTGGAGAATAGGGACACCTGATGGAGGATTTTTCACTCGATCCGCAGTGCAAAAATTCG
TGCAAGATCCAAAGTATCCCGGGATACTCTACAATCATGATAATGAGTATCTTCACTACC
AAGATGACTGGTATATTTTGTCATCCAAAGTTGAAAACAGTCCAGATGATTACATATTTG
TGTACTATAAGGGCAGAAATGATGCATGGGATGGATATGGTGGTTCTGTACTTTATACTA
GAAGCTCCGTTTTGCCTGAAACGATTATACCTGAGTTGCAAATTGCAGCTCAAAAAGTTG
GTCGTGATTTCAACACTTTCATAAAAACAGACAATACTTGTGGCCCTGAGCCACCCCTTG
TTGAACGGTTAGAGAAGAAAGTGGAAGAAGGAGAGCGGACAATCATAAAAGAAGTCGAGG
AAATAGAAGAAGAAGTCGAGAAGGTGAAGGAAAAAGAAGTCAGCTTATTCAGTAGACTGT
TCGAAGGTTTCAAAGAGCTGCAACAAGATGAAGAAAACTTTATAAGAGAGCTCAGCAAAG
AAGAAATGGATATTTTGGATGGACTTAAAATGGAAGCAACTGAAGTAGAAAAACTCTTTG
GAAATGCATTACCAATAAGGAAATTAAGGTAAATATTGTTATGAGAGTTATA