Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g050780.2.1
CDS Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0K9NXH9_ZOSMR)
Sequence

ATGGCGGAAGAGAGGAGACGATTGGCGGCGTCGGTGGATGAACTGAAAAGAGAGTTGCAG
AGAAGGGTGAATTGTATAGTTGAAAACGCTGATTACACTATTGAAGACATTGATGAAGCA
ATACATTGTTTGAGTGCTCTAGAAGACTTGAAATTGAGAGCTGCTCCACCCCCTGAATAC
CTTTGCCCAATTTCTCATCAGCTTATGAAAGACCCTGTTGTTCTTGCTTCTGGACAGACA
TATGACAGACCATACATTGAAAACTGGCTCAACAAGGGTAATCGAACCTGCCCTGAAACA
AAGGAGCTTCTCCCCAATTCACATCTCATCCCAAATCTTGTTATGAGAAAACTTATTTCA
CTCTGGTGCAAAGACCATGGAATCGAACATGGTGTAATCCCAGAATCAGACCGACATCAT
TTCAATTCACTTCTTCAGATATTGTCATCGAATCATGATCTTCCCGAGAAGATAAAAGCT
GCAAAACTAGTTCGTATTCTCACTAAAAGCTTTCCACCTCTACGGGCTTTTTTCCAATGG
GACACTGTTGCTCTTACTAAATTGCTACATCCTTTAATGTCGGGAAATGTGAATGATCAT
CCTAAATTACAAGAAGAATTGATCACAACAATTATGAACATCTCATTACATGACCCAAAT
AAAAAGATTATAGCAACAAATCCTCTTGTCATTCCTTTACTTGTTCAGTCTTTGAAATTC
GGAACACTTGAAACAAGAAGCAACTCTGCTGCTGCTCTCTGCACACTATCATCACTTGAC
TCAAACAAGTCTATTATAACAAAGGCAGGTGCTCTCGAGCCTTTAGTCAAACTCCTCGAT
GAAGGACCACTCTTGGCCATGAAAGATGCTGCTGCAGCAATTGTTAATCTCGCTGTTGTC
AAGGAAAATAGATCTATAGCTGTTTTTGAAGGAGCAGTAAAGGTGATTATGAAGAAGATC
ACTGATCGCATACTCGTTGATGAATTGTTAGTCCTTCTTTCCATGCTGTCCACTTATGAC
AAACCTATTGAGCAGATGGTAAAGCTCGATGCAGTCTCTTGTCTACTTAGTATCATTAAG
GAGGACACAAGTGATAAAAGCAAAGAGCACTGCATCGCGATTCTTCACACACTGTGTTAT
AACGACAGAACAAGGTTGCAAGAGATATGGAGAGATGAGAGTGTTAATGGGATCATAGCT
AATCTTGCCTTAAATGGGACGACTAGAGCCAAGAGGAAGGCGAAAGAAATTGTTGAGCGG
ATTGACAAATATTTCTCTGCTGCGCAAACTAGTTGA

Peptide Sequence

PEP ID

Solyc04g050780.2.1
PEP Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0K9NXH9_ZOSMR)
Sequence

MAEERRRLAASVDELKRELQRRVNCIVENADYTIEDIDEAIHCLSALEDLKLRAAPPPEY
LCPISHQLMKDPVVLASGQTYDRPYIENWLNKGNRTCPETKELLPNSHLIPNLVMRKLIS
LWCKDHGIEHGVIPESDRHHFNSLLQILSSNHDLPEKIKAAKLVRILTKSFPPLRAFFQW
DTVALTKLLHPLMSGNVNDHPKLQEELITTIMNISLHDPNKKIIATNPLVIPLLVQSLKF
GTLETRSNSAAALCTLSSLDSNKSIITKAGALEPLVKLLDEGPLLAMKDAAAAIVNLAVV
KENRSIAVFEGAVKVIMKKITDRILVDELLVLLSMLSTYDKPIEQMVKLDAVSCLLSIIK
EDTSDKSKEHCIAILHTLCYNDRTRLQEIWRDESVNGIIANLALNGTTRAKRKAKEIVER
IDKYFSAAQTS*

Transcript Sequence

Transcript ID

Solyc04g050780.2.1
Transcript Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0K9NXH9_ZOSMR)
Sequence

AAATTTAACTTAGATAGTTATCTTTTCCTTTTTTGCTTCACAAACTTATTCTTTGACTTA
TAAATAGAGTTTATTTCATTAGCTTGTCATATATTATCTCCGTGTATTCACTCAGAGGTC
ATGAAATTAAAATGACACTATTAGTAGTAAAATAAAGTAAGAGATCTCCATTAGACATAT
TTTATAAAAAAGAACTCAAATAATACTTTGATAGCATTTGTTTATTTGTTAATAGGGGTA
TCTGGATACTAATCCATATGAAATAAGAAAACAAAAAATAGTCACAAAATGCAAATATTA
ATCTTTTCGTTTTTGCAAAGAAGAAAGTAGAGGCTAGAGCTCATATTATTATATTCCAAA
AACAAGATTATTTATTTGTGCGCTAAAAATAAAATAACAAGCTCAAACTAGTTAAATGTC
AGTCATCCTCAACTTATAAGGACTTTAACTTTGATTTAATATTTTCTAATCGTGTTTTCA
AATTAAACAGAAAGATATTTCGGTTTAAAGGAGGGAATGTTAATAACGTGATCACAGATG
TGGATTTAGTAGTTGCTTTTATTTAGGATATTTCCTAGTCTTTAGGCTATAGAGCAGTGA
AGTCAGTTTTTAGATTCAGAATTATTAGGTATTTTTTTTTTATCAAATAGAGGGTTGTTG
TTTTCATCTGTTAAAATTCATATTAGTGAATGGCGGAAGAGAGGAGACGATTGGCGGCGT
CGGTGGATGAACTGAAAAGAGAGTTGCAGAGAAGGGTGAATTGTATAGTTGAAAACGCTG
ATTACACTATTGAAGACATTGATGAAGCAATACATTGTTTGAGTGCTCTAGAAGACTTGA
AATTGAGAGCTGCTCCACCCCCTGAATACCTTTGCCCAATTTCTCATCAGCTTATGAAAG
ACCCTGTTGTTCTTGCTTCTGGACAGACATATGACAGACCATACATTGAAAACTGGCTCA
ACAAGGGTAATCGAACCTGCCCTGAAACAAAGGAGCTTCTCCCCAATTCACATCTCATCC
CAAATCTTGTTATGAGAAAACTTATTTCACTCTGGTGCAAAGACCATGGAATCGAACATG
GTGTAATCCCAGAATCAGACCGACATCATTTCAATTCACTTCTTCAGATATTGTCATCGA
ATCATGATCTTCCCGAGAAGATAAAAGCTGCAAAACTAGTTCGTATTCTCACTAAAAGCT
TTCCACCTCTACGGGCTTTTTTCCAATGGGACACTGTTGCTCTTACTAAATTGCTACATC
CTTTAATGTCGGGAAATGTGAATGATCATCCTAAATTACAAGAAGAATTGATCACAACAA
TTATGAACATCTCATTACATGACCCAAATAAAAAGATTATAGCAACAAATCCTCTTGTCA
TTCCTTTACTTGTTCAGTCTTTGAAATTCGGAACACTTGAAACAAGAAGCAACTCTGCTG
CTGCTCTCTGCACACTATCATCACTTGACTCAAACAAGTCTATTATAACAAAGGCAGGTG
CTCTCGAGCCTTTAGTCAAACTCCTCGATGAAGGACCACTCTTGGCCATGAAAGATGCTG
CTGCAGCAATTGTTAATCTCGCTGTTGTCAAGGAAAATAGATCTATAGCTGTTTTTGAAG
GAGCAGTAAAGGTGATTATGAAGAAGATCACTGATCGCATACTCGTTGATGAATTGTTAG
TCCTTCTTTCCATGCTGTCCACTTATGACAAACCTATTGAGCAGATGGTAAAGCTCGATG
CAGTCTCTTGTCTACTTAGTATCATTAAGGAGGACACAAGTGATAAAAGCAAAGAGCACT
GCATCGCGATTCTTCACACACTGTGTTATAACGACAGAACAAGGTTGCAAGAGATATGGA
GAGATGAGAGTGTTAATGGGATCATAGCTAATCTTGCCTTAAATGGGACGACTAGAGCCA
AGAGGAAGGCGAAAGAAATTGTTGAGCGGATTGACAAATATTTCTCTGCTGCGCAAACTA
GTTGAGGCTGAATTAATCTTTTGCATATGCACATTCTGTTGGAAATTCTTCTACGCCTTT
TTCCCTATCCAAAGAAATAATTTTCTCTTGGATTTTCAAGTGGCATAATGTATGT