Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g050770.2.1
CDS Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0K9NXH9_ZOSMR)
Sequence

ATGGCGGAATCAAGCAACCAGGGGGAGCGAATGCAGGCGTTGGCGTTGGTGTCTGCAGAT
GAACTGAAAAGAGAGTTGCAGAGAAAGGCGAAATGTATAGTTGAAGACGATGATTACACT
ATTCATGACACTGAAGAAGTCATGGACTGTTTGAGTGCTCTAAAAGACTTGAAATTGAGA
CCTGCTCCACCTCCTCAATATCTTTGCCCAATTTCTCATCAGCTTATGAAAGACCCTGTT
GTTCTCGCTTCTGGACAGACATATGACAGACCATTCATTGAAAAGTGGCTCAACAAGGGT
AATCGAACTTGCCCTGAAACAAAGGAGCTTCTCTCCAATTTGGATCTCATCCCAAATCTT
CTAATGAAAGAACTCATTTCACTCTGGTGCAAGAAGCATGGACTTGAGCTGCCTGATAAG
GACCAGGGTATAATCACAGAAGCAGACCGAGATCGTTTTAATTCACTGCTTCACATATTG
TCGTCTAATGATGATATCCCGGAGAAGATAAAGGCTGCAGAACAAGTCCGTATGCTGACT
AAACAGTTTCCATCTCTACGGGCTTTTTTCGAAGAGGACAGTATTGCTGTTACCAAATTG
CTAGATCCTCTAATGTCTGAAAATGTGAATGATCATCCTAAACTACAAGAACATTTGATC
ACAACAGTTACGAACATCTCAATACATGACGCCAATAAAAAGCTTGTAGCAACAAATCCT
GTTGTCATTCCTTTACTTATTGAGTCATTGACGTTTGGAACAATTGAAACAAGAAGCAAC
TCTGCTGCTGCTCTCTGCACACTATCATCACTTGAGTCAAACAAGTGTATTATAATGAAG
GCAGGTGCTCTCGAGCCTTTAGTTAAACTCCTGGATGAGGGACCATTGTTGGCCATGAAA
GATGCTGCTGCAGCAATTTATAGTCTCATTCTTGTCAAAGAAAATAGGGCTGTAGCTGTT
TTTGAAGGAGTAGTAAAAGTGATTATGAAGAAGATCACTGATCGCATACTCATTGACAAA
ATGTTAGTCCTTCTTGCTCTACTGTCCAGTTATGACAAAGCTATTGAACAGATGATAAAG
CTGGAGGCAGTCTCTTGTCTTCTTAGTATCATTAAGGAGGACAGAAGTGATGAAAGTAAG
GAGCACTGCATCACAATTCTTCACACACTGTGTTATAATGATCGAACAAGGTTGAAAGAG
ATGTGGAGAGATGAGAGTGTTAATGGCGCCATTGCTAATCTTGCCCTAAACGGGACGACT
AGAGCCAAGAGGAAGGCCAAAGAAATTGTTGAGCGGATAGACAAATATTTCTCTGATGAG
CAAAGTAGTTGA

Peptide Sequence

PEP ID

Solyc04g050770.2.1
PEP Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0K9NXH9_ZOSMR)
Sequence

MAESSNQGERMQALALVSADELKRELQRKAKCIVEDDDYTIHDTEEVMDCLSALKDLKLR
PAPPPQYLCPISHQLMKDPVVLASGQTYDRPFIEKWLNKGNRTCPETKELLSNLDLIPNL
LMKELISLWCKKHGLELPDKDQGIITEADRDRFNSLLHILSSNDDIPEKIKAAEQVRMLT
KQFPSLRAFFEEDSIAVTKLLDPLMSENVNDHPKLQEHLITTVTNISIHDANKKLVATNP
VVIPLLIESLTFGTIETRSNSAAALCTLSSLESNKCIIMKAGALEPLVKLLDEGPLLAMK
DAAAAIYSLILVKENRAVAVFEGVVKVIMKKITDRILIDKMLVLLALLSSYDKAIEQMIK
LEAVSCLLSIIKEDRSDESKEHCITILHTLCYNDRTRLKEMWRDESVNGAIANLALNGTT
RAKRKAKEIVERIDKYFSDEQSS*

Transcript Sequence

Transcript ID

Solyc04g050770.2.1
Transcript Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0K9NXH9_ZOSMR)
Sequence

TCATATTGCACATAAAATGTATTACTTCCTCATAGAAACATCGCTAACGGTTGAGCTATA
TGCTCCATGTCCGTCAATAACTTGTCGAATGCGAGACTCGCGCCTAATAACGAGATTAAT
AGGTTTTTTTGTGTCATCGATTGCATTTCTCTTTTATAACTTGAAACTATTTTAAAAATA
AATTTGTAAAATCTAATTAAATTTTCATAACGGAATAAATTTTTAATCTGACATAAATAT
ATGATCAATCTTTTTTTCGAATACATGAAAACATTTCGTTCCATTTTTTTTTTAAAAAAT
AAAAAATAAAAAATTGGCAATTGAAGAAATAGAGAAGGTGGTTAATAATGAAGTAAGAGA
GAGAAAGAAATTGTGTAACCACCTCTCCTTATATATAAGAAGAAAAAAAAAACAAATTAG
AGTTGGTTTGTGTTAAAAAAAATAACAGAATGGCGGAATCAAGCAACCAGGGGGAGCGAA
TGCAGGCGTTGGCGTTGGTGTCTGCAGATGAACTGAAAAGAGAGTTGCAGAGAAAGGCGA
AATGTATAGTTGAAGACGATGATTACACTATTCATGACACTGAAGAAGTCATGGACTGTT
TGAGTGCTCTAAAAGACTTGAAATTGAGACCTGCTCCACCTCCTCAATATCTTTGCCCAA
TTTCTCATCAGCTTATGAAAGACCCTGTTGTTCTCGCTTCTGGACAGACATATGACAGAC
CATTCATTGAAAAGTGGCTCAACAAGGGTAATCGAACTTGCCCTGAAACAAAGGAGCTTC
TCTCCAATTTGGATCTCATCCCAAATCTTCTAATGAAAGAACTCATTTCACTCTGGTGCA
AGAAGCATGGACTTGAGCTGCCTGATAAGGACCAGGGTATAATCACAGAAGCAGACCGAG
ATCGTTTTAATTCACTGCTTCACATATTGTCGTCTAATGATGATATCCCGGAGAAGATAA
AGGCTGCAGAACAAGTCCGTATGCTGACTAAACAGTTTCCATCTCTACGGGCTTTTTTCG
AAGAGGACAGTATTGCTGTTACCAAATTGCTAGATCCTCTAATGTCTGAAAATGTGAATG
ATCATCCTAAACTACAAGAACATTTGATCACAACAGTTACGAACATCTCAATACATGACG
CCAATAAAAAGCTTGTAGCAACAAATCCTGTTGTCATTCCTTTACTTATTGAGTCATTGA
CGTTTGGAACAATTGAAACAAGAAGCAACTCTGCTGCTGCTCTCTGCACACTATCATCAC
TTGAGTCAAACAAGTGTATTATAATGAAGGCAGGTGCTCTCGAGCCTTTAGTTAAACTCC
TGGATGAGGGACCATTGTTGGCCATGAAAGATGCTGCTGCAGCAATTTATAGTCTCATTC
TTGTCAAAGAAAATAGGGCTGTAGCTGTTTTTGAAGGAGTAGTAAAAGTGATTATGAAGA
AGATCACTGATCGCATACTCATTGACAAAATGTTAGTCCTTCTTGCTCTACTGTCCAGTT
ATGACAAAGCTATTGAACAGATGATAAAGCTGGAGGCAGTCTCTTGTCTTCTTAGTATCA
TTAAGGAGGACAGAAGTGATGAAAGTAAGGAGCACTGCATCACAATTCTTCACACACTGT
GTTATAATGATCGAACAAGGTTGAAAGAGATGTGGAGAGATGAGAGTGTTAATGGCGCCA
TTGCTAATCTTGCCCTAAACGGGACGACTAGAGCCAAGAGGAAGGCCAAAGAAATTGTTG
AGCGGATAGACAAATATTTCTCTGATGAGCAAAGTAGTTGAGGCTGAATATATTTTGCAT
ATAAACATTCTTAATCACCCCATGTAAGTGCTGTTGATTCTCATTAGACCGAATTCGTCC
TTGTAGGAAAATATAGATTCTTTTGCTTGTACATTAGTGTGAAATCCTGAACATTCTTTG
TAGTTTGTGTCACCTTTAAAGACAGATACATCCTGCTTATAATGTTGAGAAGTTGAAATT
GCTTTACTATTGGTTTTGCTATCTCCAGTGTGAAAGGTGAAGATATACAAAATATTTTCA
GATGGTTCAGTGTTAAATGGATTGTGTTTGGATTTAGTTAATTACAAGAATCAAGTCAAA
TTATCTTCCTTGCTGATGAATGGGCAGGTTTAGAGTTGCATCAAACATTTAAACCTCATT
ACCAAGGAGGTGGAATTAGCTCTTACACTAAAAAAAACCCTCTATTGCCCTCTATATTAA
CCAACTCTAAGACTTCAACTTGTAAGACACACAATTAACTCTAACTGTGTTCATATGATC
AGTAACCAAGAAAAGACTTGATAAATTTCTTTATAGATGAGAAACAAAACTCAAGGGATA
CTTAGCGTATCTTTACAAGCAACAAAAGAGAATTTCAACAAAATGTTCGTGTGTATTAAT
ATTATATATTATGTATAAATGATGTATCAGATATATACACTGTTTATGCGATACTTATAC
ATTGCAAA