Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc04g047770.3.1
CDS Infomation	VHS domain-containing protein (AHRD V3.3 *** A0A061GBA9_THECC)
Sequence	ATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCG ACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTT AGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAA CACAAATCCCCAATTGTCAAGCAAAAGGCTCTCAGAGTGATCAAATATGCTGTCGGAAAA TCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATT CACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAA ACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAA AATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGAT GATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACT CTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTT CAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACA AATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAA AAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAG CCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCT TTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAGGTTCGTGTGAAAGCA ATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCA TCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCA TTAAGAGAAAAAGCAAACAAAGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCT GTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTG ATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGT AGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGA GACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCT GATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATG ACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAA CTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAG GATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAG AATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCT TGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTT AATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTG TTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCT CAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCC ACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATC TTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAA GGTACAAAGGCATTCGATTTTATCTCGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGG GTGATTTGA

Peptide Sequence

PEP ID	Solyc04g047770.3.1
PEP Infomation	VHS domain-containing protein (AHRD V3.3 *** A0A061GBA9_THECC)
Sequence	MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHSSIVKEVSEFILKRLQ HKSPIVKQKALRVIKYAVGKSCPEFTREMQRNSVAIRQLIHYKGQPDPLKADALNKAVRE TAQEALSALFSSQDTKPPTENLNLGGRIQGFGNTSYEIHDDKRSFLSDVVGATIKQGLNT LTQSPPLKKNDTGTYTSPNLQSSLTTQPDTSHNHTSRFSTNPASATWTHTETTTKPHSAE KTREDRLLETIATSGGVRLQPTRDALQVFLLEASKLDALALTHALESKLQSPSWQVRVKA ICVLEAILRKKDDAHFGTMASYFTENRDVVVKCYESPQASLREKANKVLSLLNDGQTADA VAHVDRSANACNPVVQMPDLIDTDNSDYLFGTDNLTNMQSSEGIKIASTSATPLMDDLFG DKSGSSFSSSQKKNDDDPFADVSFHISNEKAPEADLFSGMTVDKSDATEIHSVNNRNGPE LFDIFGSSVEVPREPNNSRKDVPDLMNSLSLNGNESSMEQNGSSGATPYQNIFQEPTIDP CHHASNDVMNSILSSQAGGVNANPMFPLGSMQYNLPPGFVLNPSFAPQALNYNAMGNIFA QQQLLATLSSYQQLGSMHSSTSASHAADSAEVYGSALPDIFNASISKQTPTSLMNTSKKE GTKAFDFISDHLAAARDPKRVI*

Transcript Sequence

Transcript ID	Solyc04g047770.3.1
Transcript Infomation	VHS domain-containing protein (AHRD V3.3 *** A0A061GBA9_THECC)
Sequence	AAGGCGAAAATGGAGGTGTAGAGAATAATAATATAATAATAAAATTGTGGAGGTCGGTTG GGTTGGGTGAAAAACCCTAAAAGTAGATTTGGAGATCAGATCTGAAATTGTTGAATGGAT TCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCT GATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCC TCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAA TCCCCAATTGTCAAGCAAAAGGCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGT CCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTAC AAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCG CAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTA AATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAG AGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACA CAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGC TCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCT GCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACC CGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACT CGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACT CATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAGGTTCGTGTGAAAGCAATCTGT GTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTAT TTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGA GAAAAAGCAAACAAAGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCT CATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGAC ACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAA GGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAA TCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTT TCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTT GACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTT GATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTT CCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGC AGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCAT CACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCA AATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAAT CCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAG CAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGT GCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAAT GCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACA AAGGCATTCGATTTTATCTCGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATT TGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATAC ACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGA AAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGAT GAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTG TTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTC TTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTA TGACAAGAAATAAATGAAAGGTAAATTGTGATTTATTTTTTGTATTTACAATGTTTTCTT TTGGCAATTTTTTAACTTTTTATCTTATACGTTT