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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g045590.3.1
CDS Infomation

Alpha-ketoglutarate-dependent dioxygenase alkB (AHRD V3.3 *** G5DX61_SILLA)
Sequence

ATGTACGGTCCCACAGAAGATGCAGAGCGAACCGCTTTCAGGATGGCTGAAAAGAAATAC
AAGCTGTATTACGACAATACCCGAAAGAAAAAGCAACCCAGACCAGTAGATTTGTCTGAC
GTTACTGATTTCAAGTCAATTTCAGAGGCTTACCACAGAAATGCTGAACTTCCCTCAGGC
ATTTTCCCAATTCATTGCGATCTCCATACTCCTATCTTCTGCTTGGAAAGTCATCCCGGG
TTTTATTTCATTCCTGGAGCATTACCCGTTGAGGAGCAATGCCGGTGGATAAAGGAGAGT
TTAACAAGCTTTCCCCAACCTCCTAACAGGACCAACCACAATGCAATTTATGGGCCTCTA
CAGGACTTATTTGCTGCTGCCAAGGATAATAAAGTTTTAATTCAAGAGGAGCAGTACTGT
GGAACCAATAATTCTGAGGTGGAAATCATTGAAAACGACATAAATGTTCCCACATGGAAC
TTTTTTGATCAATCAGGTGCATTATCCAAAGGAGTTACATGCAAATCAGTGTTAGCCTCT
GTTTTGCTTCGTAAGTTACGGTGGAGCACCCTTGGCTTGCAGTTTGACTGGTCGAAGCGG
AGCTATAATATTTCTCTGCCTCACAACAAGATACCTGATGCACTTTGCCTACTGGCTGAA
AGAATGGCAGCACCTACCCTGCCATTAGGTGAAGTGTTCCAGGCAGAAGCAGCAATTGTC
AATTACTTTGGTCTAGGTGACACACTTGGTGGCCACCTTGATGACATGGAGAAGGATTGG
AGTAAGCCTATTGTTAGCATGAGCTTGGGCTGTAAAGGCATTTTCCTTATCGGGGGAAAG
TCTAGGGAGGTTCCACCTCTTGCAATGTTTGTTCGAAGTGGTGATGTTATTCTTATGGCA
GGACAAGCAAGGGAATGCTTCCATGGTGTCCCTAGGATCTTCACTGATAAAGAAAATGCT
GAGATATCCTCCCTTGAATTGCTGTTTTCTGATGAAGAGGATTCTGCTTTGTTGGAGTAC
ATTAAGACTTCTAGAATCAACATCAATATTAGACAAGTATTCTAA

Peptide Sequence

PEP ID

Solyc04g045590.3.1
PEP Infomation

Alpha-ketoglutarate-dependent dioxygenase alkB (AHRD V3.3 *** G5DX61_SILLA)
Sequence

MYGPTEDAERTAFRMAEKKYKLYYDNTRKKKQPRPVDLSDVTDFKSISEAYHRNAELPSG
IFPIHCDLHTPIFCLESHPGFYFIPGALPVEEQCRWIKESLTSFPQPPNRTNHNAIYGPL
QDLFAAAKDNKVLIQEEQYCGTNNSEVEIIENDINVPTWNFFDQSGALSKGVTCKSVLAS
VLLRKLRWSTLGLQFDWSKRSYNISLPHNKIPDALCLLAERMAAPTLPLGEVFQAEAAIV
NYFGLGDTLGGHLDDMEKDWSKPIVSMSLGCKGIFLIGGKSREVPPLAMFVRSGDVILMA
GQARECFHGVPRIFTDKENAEISSLELLFSDEEDSALLEYIKTSRININIRQVF*

Transcript Sequence

Transcript ID

Solyc04g045590.3.1
Transcript Infomation

Alpha-ketoglutarate-dependent dioxygenase alkB (AHRD V3.3 *** G5DX61_SILLA)
Sequence

TTTCTTTTTAAAATGGTGTATTTTTATAAATATTTATTGATAATGTTATATTTGATATTT
ATTGTGTTTAAGTAGTTTTATTTTTTTAAAAAGCTAAATATTGAGATGTTTCCAAACAAA
CAAATGAAGTATTAGTTATTGAGATGAAAACAAACAGACCTAAACTTGGAAAGTTGTCAG
CATAGTTGATTGATAAGTTAAATTTTGTGATGGAAGGGCGTGAACCCTAATTGAAAGATT
TATGTGTTTTTAGGGGTAGTAGAAGATGTACGGTCCCACAGAAGATGCAGAGCGAACCGC
TTTCAGGATGGCTGAAAAGAAATACAAGCTGTATTACGACAATACCCGAAAGAAAAAGCA
ACCCAGACCAGTAGATTTGTCTGACGTTACTGATTTCAAGTCAATTTCAGAGGCTTACCA
CAGAAATGCTGAACTTCCCTCAGGCATTTTCCCAATTCATTGCGATCTCCATACTCCTAT
CTTCTGCTTGGAAAGTCATCCCGGGTTTTATTTCATTCCTGGAGCATTACCCGTTGAGGA
GCAATGCCGGTGGATAAAGGAGAGTTTAACAAGCTTTCCCCAACCTCCTAACAGGACCAA
CCACAATGCAATTTATGGGCCTCTACAGGACTTATTTGCTGCTGCCAAGGATAATAAAGT
TTTAATTCAAGAGGAGCAGTACTGTGGAACCAATAATTCTGAGGTGGAAATCATTGAAAA
CGACATAAATGTTCCCACATGGAACTTTTTTGATCAATCAGGTGCATTATCCAAAGGAGT
TACATGCAAATCAGTGTTAGCCTCTGTTTTGCTTCGTAAGTTACGGTGGAGCACCCTTGG
CTTGCAGTTTGACTGGTCGAAGCGGAGCTATAATATTTCTCTGCCTCACAACAAGATACC
TGATGCACTTTGCCTACTGGCTGAAAGAATGGCAGCACCTACCCTGCCATTAGGTGAAGT
GTTCCAGGCAGAAGCAGCAATTGTCAATTACTTTGGTCTAGGTGACACACTTGGTGGCCA
CCTTGATGACATGGAGAAGGATTGGAGTAAGCCTATTGTTAGCATGAGCTTGGGCTGTAA
AGGCATTTTCCTTATCGGGGGAAAGTCTAGGGAGGTTCCACCTCTTGCAATGTTTGTTCG
AAGTGGTGATGTTATTCTTATGGCAGGACAAGCAAGGGAATGCTTCCATGGTGTCCCTAG
GATCTTCACTGATAAAGAAAATGCTGAGATATCCTCCCTTGAATTGCTGTTTTCTGATGA
AGAGGATTCTGCTTTGTTGGAGTACATTAAGACTTCTAGAATCAACATCAATATTAGACA
AGTATTCTAAATCTAGAATGAGTTGTCTTTTGAAAGTTTTGTAGAGATGTAACATTGGAA
AAAAAATTCGTCTGTAGCCAAAATTTTGCAGAGAATTCTCTCATATGCTGTTTTGTTGAG
ATTCAAAACCTACCCCAGGCACACTCGATCATTTGCATTTTTATTTCCTTGTGCTCTTAA
CGGTTAACCCTTTGGATCTCTGATTGTAACATGAAAGGTCGTGAGGGTAGAAAATGTAGT
TCCATTCAAATTTGTGGATAAAGCTTGCTCATACGGCTTAGTATAATAGCGTAGAGAGTT
GAAGAAAAAATTATAACCTTAAAACAGAGAATTATAATAACCATACTGATGGTTTGTCCA
GATTCTCGTGAACAAAGACTTTATAATTGATGATTTAGCCAAGCATCTGAAATAAATCAT
CTTCTTATAGAAGTACAAATATATGACAATTATTTATACCTAACACATGGTTAATAGGAC
GGTTGTATTATAAATAAAAAATAGCCAAAAATGTGTAAGGCGAGAGCATACATAATTGGA
ATGGATCAGCAGTAAGAAGGCGGTAGCGTCCCACCTAATTGTGTGGGAAGAAGGGGAATT
AAGGAATGTAATACATCGGTTATTAGGGGACGATAGCTTGGCTCTGGCTGAACACATAAT
AGAGCAACTGCAGCAACCTACACATTACCACAACACAGACTTCAGAGCTCTGAACTGAAA
ATAACAAAATGTTGAACCCTAGCTAAATGGCACTAATTTTTGCAGAAACCTGATACAAAT
GCTTTAAATCCATTGTGTTTTGTATGACAGGATCAACAATGTTTGGAAGCTTTGATCTAT
CTGTCAGCTGAGGCATGGCCTACAATTCCATAAAGAGTTTTAGACAAGTTCAATTTCAGA
GTGAAGTGGATCTCAGACCATTACTTACCCATGTCACTATAGACTGACATTCAGTGGCTG
CCTCCTTTTCTACAGGCCGCCTTCCCAATAACAGCTCCAAAAGTACTACTCCAAAACCAT
AAACATCACTTTTATCACTTAATTTTCCTGTAAAACAAAGAAATGAAAATTTAAGTGGCA
CTATTTTAAAAGGATCTCAATTGGTTAAAGTAT