Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g045530.3.1
CDS Infomation

DNA primase large subunit (AHRD V3.3 *** K4BRI2_SOLLC)
Sequence

ATGGAAGCGGTAAGATCGCAGCGAAAATCTTTGGTATCGACCGGCGTCGGTTCAACACTT
CCTCTCTATCGCTCTGCCCCTCCACTTGAAGTCCGTCTTGAAGATTTCGAGCTTTACGCC
ATTGATCGCCTCCGAGTTCTTAAAGGTATTTCAGATGCTTTGTCTAGAGGAAAGAAACCC
GATGAAATGGAGAAATTGGTGTTGGATTTGTGGAAAACAAATATGAGGCATCAACATTCA
TCTGAGCTCCTTAATAAGGACATAATTTCACATTTTGTTTTGCGACTTGTTTATTGCAGG
ACGGAGGAGTTAAGAAAATGGTTTCTTTCAATTGAAACTACCTTATTTCGTTACCGTTTC
CGCGATGAACCTCCTGAAAAACAGAGAGCGCTAATGGCAGATTTTGATCTTCCATACAAA
GCTGTAACCATTGCTGAATACGAGAGTGTAAAGGAAAAATTGAACCAAGTTGCACGCGCC
ATAGGCCAACCTATTACAACTGATGCTATCTATTACAAGGTTCCATTTGAGGAGGTGCCA
GAGCTTGTGGCAGGTCGACGAGTATTTATTCAAAAAGGGAATGCATATATCGCCATGAAT
CAGGTGGTTTCACTAGTAATCACACAGTTTCGGAGTCATCTTTCGAAAGCACTAGTGCTG
ACAAACAGAAAATGGACCTCTATGATCAGAGAACAGGAGAAGGACCGTTTGGTTCCTATT
ATTGAAGCCTTATCCACAAGTTACCTGGGTCCTGATTATAACCAGCCGAGAGAACATGCA
GAAATATCACTAAAAGACATTGACCAGATTGCTAAGAGTTCATTCCCTCTATGTATGGGT
CATCTTTTCGAAAAGCTACAAGAGGATCATCATCTGAAGCATGGAGGGAGGATGCAACTT
GGTCTATTTCTCAAGGGTGTTGGATTGAAGTTGGATGATGCCCTTGCATTCTGGAGAGCT
GAGTTCTCCCGAAAAGTTGGTGCTGAAAGATTTGAAAAAGAATATGCATACAGCATAAGA
CACAACTATGGGAAAGAAGGAAAGAGAACGGATTACACACCTTATTCTTGTCAAAAGATT
ATATCATCAACTCCTGGAGTTGGAGATCACCATGGCTGTCCATATCGTCATTTCAGTGAG
GAGAATCTGAGAGCTGCTCTGACCAGGATGAGAGTAGGCAATCGAGCACTGGAGGATGTG
ATAGACAAAGTCCGAAATAGACATTACCAGTTGGCATGCACTTTGACCTTTGAAGCTGTT
CATGGCTCATCTTGTGATGCCGGGGTTAACCATCCAAATCAGTACTACAATGACAGTCAG
AGGATCTTGGAATCACAGGTAAGTTCTTCGTGGACTAATACTAAGATGGCTTGTAAAGGA
TATCTTTGTCATTGTGATTTTGTGATTATGGATTTGGTGGTATAA

Peptide Sequence

PEP ID

Solyc04g045530.3.1
PEP Infomation

DNA primase large subunit (AHRD V3.3 *** K4BRI2_SOLLC)
Sequence

MEAVRSQRKSLVSTGVGSTLPLYRSAPPLEVRLEDFELYAIDRLRVLKGISDALSRGKKP
DEMEKLVLDLWKTNMRHQHSSELLNKDIISHFVLRLVYCRTEELRKWFLSIETTLFRYRF
RDEPPEKQRALMADFDLPYKAVTIAEYESVKEKLNQVARAIGQPITTDAIYYKVPFEEVP
ELVAGRRVFIQKGNAYIAMNQVVSLVITQFRSHLSKALVLTNRKWTSMIREQEKDRLVPI
IEALSTSYLGPDYNQPREHAEISLKDIDQIAKSSFPLCMGHLFEKLQEDHHLKHGGRMQL
GLFLKGVGLKLDDALAFWRAEFSRKVGAERFEKEYAYSIRHNYGKEGKRTDYTPYSCQKI
ISSTPGVGDHHGCPYRHFSEENLRAALTRMRVGNRALEDVIDKVRNRHYQLACTLTFEAV
HGSSCDAGVNHPNQYYNDSQRILESQVSSSWTNTKMACKGYLCHCDFVIMDLVV*

Transcript Sequence

Transcript ID

Solyc04g045530.3.1
Transcript Infomation

DNA primase large subunit (AHRD V3.3 *** K4BRI2_SOLLC)
Sequence

TGAATGGGCCTAGAGGCCGAAAGGGGAGGGAAATGTTTCCCGCCATTTTGTACTTAGACC
CATTTACCCATACTCATATAGCGTTACTGTGTTTAAGGAAACTGATAGGAAAGGATGGAA
GCGGTAAGATCGCAGCGAAAATCTTTGGTATCGACCGGCGTCGGTTCAACACTTCCTCTC
TATCGCTCTGCCCCTCCACTTGAAGTCCGTCTTGAAGATTTCGAGCTTTACGCCATTGAT
CGCCTCCGAGTTCTTAAAGGTATTTCAGATGCTTTGTCTAGAGGAAAGAAACCCGATGAA
ATGGAGAAATTGGTGTTGGATTTGTGGAAAACAAATATGAGGCATCAACATTCATCTGAG
CTCCTTAATAAGGACATAATTTCACATTTTGTTTTGCGACTTGTTTATTGCAGGACGGAG
GAGTTAAGAAAATGGTTTCTTTCAATTGAAACTACCTTATTTCGTTACCGTTTCCGCGAT
GAACCTCCTGAAAAACAGAGAGCGCTAATGGCAGATTTTGATCTTCCATACAAAGCTGTA
ACCATTGCTGAATACGAGAGTGTAAAGGAAAAATTGAACCAAGTTGCACGCGCCATAGGC
CAACCTATTACAACTGATGCTATCTATTACAAGGTTCCATTTGAGGAGGTGCCAGAGCTT
GTGGCAGGTCGACGAGTATTTATTCAAAAAGGGAATGCATATATCGCCATGAATCAGGTG
GTTTCACTAGTAATCACACAGTTTCGGAGTCATCTTTCGAAAGCACTAGTGCTGACAAAC
AGAAAATGGACCTCTATGATCAGAGAACAGGAGAAGGACCGTTTGGTTCCTATTATTGAA
GCCTTATCCACAAGTTACCTGGGTCCTGATTATAACCAGCCGAGAGAACATGCAGAAATA
TCACTAAAAGACATTGACCAGATTGCTAAGAGTTCATTCCCTCTATGTATGGGTCATCTT
TTCGAAAAGCTACAAGAGGATCATCATCTGAAGCATGGAGGGAGGATGCAACTTGGTCTA
TTTCTCAAGGGTGTTGGATTGAAGTTGGATGATGCCCTTGCATTCTGGAGAGCTGAGTTC
TCCCGAAAAGTTGGTGCTGAAAGATTTGAAAAAGAATATGCATACAGCATAAGACACAAC
TATGGGAAAGAAGGAAAGAGAACGGATTACACACCTTATTCTTGTCAAAAGATTATATCA
TCAACTCCTGGAGTTGGAGATCACCATGGCTGTCCATATCGTCATTTCAGTGAGGAGAAT
CTGAGAGCTGCTCTGACCAGGATGAGAGTAGGCAATCGAGCACTGGAGGATGTGATAGAC
AAAGTCCGAAATAGACATTACCAGTTGGCATGCACTTTGACCTTTGAAGCTGTTCATGGC
TCATCTTGTGATGCCGGGGTTAACCATCCAAATCAGTACTACAATGACAGTCAGAGGATC
TTGGAATCACAGGTAAGTTCTTCGTGGACTAATACTAAGATGGCTTGTAAAGGATATCTT
TGTCATTGTGATTTTGTGATTATGGATTTGGTGGTATAATTAATCATGTGCTGTGATAAA
ATATTTTTCCGTTGTTTCCATTACCTGTTTTAGGTAGAAGTATGATGCTGAATACATTTG
GTGTCGGAGAAATAAGAGTTCCAGTAACCCAAAAGGAACAGCAGCTTCAATGTAGGGCAA
TATAGATGTGTTGCCTCCCTTGTTGGAAGATCTGGTTGACTTGCACCTGCAAGAATCCAA
AGAAGAGCATGCAGGACTAACTTAACTACGAAGAAGAGCTAATGCCTTTTCTGTCCAAAC
AAGTTAAAAAGGGAAAACAGTTGGATCACCGATTACAGTTTTTTGATGCAATCCCATTTT
TTTAAAGCATTAGTGTACTGTAAGTCTATAACTTGTATTAATTTAATCCTGTTCAGATCT
ATATCTATATAATTTATACGAGGAAGGTGATGTGACACTCTCTTTACCCTTGCCTTCTTT
CTTATTTTCTCTACTCAGAAGA