Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g040190.1.1
CDS Infomation

lycopene beta-cyclase
Sequence

ATGGATACTTTGTTGAAAACCCCAAATAACCTTGAATTTCTGAACCCACATCATGGTTTT
GCTGTTAAAGCTAGTACCTTTAGATCTGAGAAGCATCATAATTTTGGTTCTAGGAAGTTT
TGTGAAACTTTGGGTAGAAGTGTTTGTGTTAAGGGTAGTAGTAGTGCTCTTTTAGAGCTT
GTACCTGAGACCAAAAAGGAGAATCTTGATTTTGAGCTTCCTATGTATGACCCTTCAAAA
GGGGTTGTTGTGGATCTTGCTGTGGTTGGTGGTGGCCCTGCAGGACTTGCTGTTGCACAG
CAAGTTTCTGAAGCAGGACTCTCTGTTTGTTCAATTGATCCGAATCCTAAATTGATATGG
CCTAATAACTATGGTGTTTGGGTGGATGAATTTGAGGCTATGGACTTGTTAGATTGTCTA
GATGCTACCTGGTCTGGTGCAGCAGTGTACATTGATGATAATACGGCTAAAGATCTTCAT
AGACCTTATGGAAGGGTTAACCGGAAACAGCTGAAATCGAAAATGATGCAGAAATGTATA
ATGAATGGTGTTAAATTCCACCAAGCCAAAGTTATAAAGGTGATTCATGAGGAATCGAAA
TCCATGTTGATATGCAATGATGGTATTACTATTCAGGCAACGGTGGTGCTCGATGCAACT
GGCTTCTCTAGATCTCTTGTTCAGTATGATAAGCCTTATAACCCCGGGTATCAAGTTGCT
TATGGCATTTTGGCTGAAGTGGAAGAGCACCCCTTTGATGTAAACAAGATGGTTTTCATG
GATTGGCGAGATTCTCATTTGAAGAACAATACTGATCTCAAGGAGAGAAATAGTAGAATA
CCAACTTTTCTTTATGCAATGCCATTTTCATCCAACAGGATATTTCTTGAAGAAACATCA
CTCGTAGCTCGTCCTGGCTTGCGTATAGATGATATTCAAGAACGAATGGTGGCTCGTTTA
AACCATTTGGGGATAAAAGTGAAGAGCATTGAAGAAGATGAACATTGTCTAATACCAATG
GGTGGTCCACTTCCAGTATTACCTCAGAGAGTCGTTGGAATCGGTGGTACAGCTGGCATG
GTTCATCCATCCACCGGTTATATGGTGGCAAGGACACTAGCTGCGGCTCCTGTTGTTGCC
AATGCCATAATTCAATACCTCGGTTCTGAAAGAAGTCATTCGGGTAATGAATTATCCACA
GCTGTTTGGAAAGATTTGTGGCCTATAGAGAGGAGACGTCAAAGAGAGTTCTTCTGCTTC
GGTATGGATATTCTTCTGAAGCTTGATTTACCTGCTACAAGAAGGTTCTTTGATGCATTC
TTTGACTTAGAACCTCGTTATTGGCATGGCTTCTTATCGTCTCGATTGTTTCTACCTGAA
CTCATAGTTTTTGGGCTGTCTCTATTCTCTCATGCTTCAAATACTTCTAGATTTGAGATA
ATGACAAAGGGAACTGTTCCATTAGTAAATATGATCAACAATTTGTTACAGGATAAAGAA
TGA

Peptide Sequence

PEP ID

Solyc04g040190.1.1
PEP Infomation

lycopene beta-cyclase
Sequence

MDTLLKTPNNLEFLNPHHGFAVKASTFRSEKHHNFGSRKFCETLGRSVCVKGSSSALLEL
VPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPNPKLIW
PNNYGVWVDEFEAMDLLDCLDATWSGAAVYIDDNTAKDLHRPYGRVNRKQLKSKMMQKCI
MNGVKFHQAKVIKVIHEESKSMLICNDGITIQATVVLDATGFSRSLVQYDKPYNPGYQVA
YGILAEVEEHPFDVNKMVFMDWRDSHLKNNTDLKERNSRIPTFLYAMPFSSNRIFLEETS
LVARPGLRIDDIQERMVARLNHLGIKVKSIEEDEHCLIPMGGPLPVLPQRVVGIGGTAGM
VHPSTGYMVARTLAAAPVVANAIIQYLGSERSHSGNELSTAVWKDLWPIERRRQREFFCF
GMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSRFEI
MTKGTVPLVNMINNLLQDKE*

Transcript Sequence

Transcript ID

Solyc04g040190.1.1
Transcript Infomation

lycopene beta-cyclase
Sequence

ATGGATACTTTGTTGAAAACCCCAAATAACCTTGAATTTCTGAACCCACATCATGGTTTT
GCTGTTAAAGCTAGTACCTTTAGATCTGAGAAGCATCATAATTTTGGTTCTAGGAAGTTT
TGTGAAACTTTGGGTAGAAGTGTTTGTGTTAAGGGTAGTAGTAGTGCTCTTTTAGAGCTT
GTACCTGAGACCAAAAAGGAGAATCTTGATTTTGAGCTTCCTATGTATGACCCTTCAAAA
GGGGTTGTTGTGGATCTTGCTGTGGTTGGTGGTGGCCCTGCAGGACTTGCTGTTGCACAG
CAAGTTTCTGAAGCAGGACTCTCTGTTTGTTCAATTGATCCGAATCCTAAATTGATATGG
CCTAATAACTATGGTGTTTGGGTGGATGAATTTGAGGCTATGGACTTGTTAGATTGTCTA
GATGCTACCTGGTCTGGTGCAGCAGTGTACATTGATGATAATACGGCTAAAGATCTTCAT
AGACCTTATGGAAGGGTTAACCGGAAACAGCTGAAATCGAAAATGATGCAGAAATGTATA
ATGAATGGTGTTAAATTCCACCAAGCCAAAGTTATAAAGGTGATTCATGAGGAATCGAAA
TCCATGTTGATATGCAATGATGGTATTACTATTCAGGCAACGGTGGTGCTCGATGCAACT
GGCTTCTCTAGATCTCTTGTTCAGTATGATAAGCCTTATAACCCCGGGTATCAAGTTGCT
TATGGCATTTTGGCTGAAGTGGAAGAGCACCCCTTTGATGTAAACAAGATGGTTTTCATG
GATTGGCGAGATTCTCATTTGAAGAACAATACTGATCTCAAGGAGAGAAATAGTAGAATA
CCAACTTTTCTTTATGCAATGCCATTTTCATCCAACAGGATATTTCTTGAAGAAACATCA
CTCGTAGCTCGTCCTGGCTTGCGTATAGATGATATTCAAGAACGAATGGTGGCTCGTTTA
AACCATTTGGGGATAAAAGTGAAGAGCATTGAAGAAGATGAACATTGTCTAATACCAATG
GGTGGTCCACTTCCAGTATTACCTCAGAGAGTCGTTGGAATCGGTGGTACAGCTGGCATG
GTTCATCCATCCACCGGTTATATGGTGGCAAGGACACTAGCTGCGGCTCCTGTTGTTGCC
AATGCCATAATTCAATACCTCGGTTCTGAAAGAAGTCATTCGGGTAATGAATTATCCACA
GCTGTTTGGAAAGATTTGTGGCCTATAGAGAGGAGACGTCAAAGAGAGTTCTTCTGCTTC
GGTATGGATATTCTTCTGAAGCTTGATTTACCTGCTACAAGAAGGTTCTTTGATGCATTC
TTTGACTTAGAACCTCGTTATTGGCATGGCTTCTTATCGTCTCGATTGTTTCTACCTGAA
CTCATAGTTTTTGGGCTGTCTCTATTCTCTCATGCTTCAAATACTTCTAGATTTGAGATA
ATGACAAAGGGAACTGTTCCATTAGTAAATATGATCAACAATTTGTTACAGGATAAAGAA
TGA