Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g026200.3.1
CDS Infomation

Ubiquitin-like-specific protease 1D (AHRD V3.3 *-* ULP1D_ARATH)
Sequence

ATGGACGGAGAAGAGCTCAAAGAAGGACTTTCGAACTTATCAGATACAGAATTGACCGAC
AAAATTGCTAGGCTAAAAAAATCTCTCTTTAGCAACATTGGTGTTAGGCTACCCGATGGA
GGTGAAAAGCTTAGGGCAAATATCAAACTGCATGAGGATGAATTAGAATGGAGGAAACGG
GCAGTGTCTAAGCCAGCCAATGCTTTCCAAGAAGAACTATATGCTCTGAATCCATGTGAC
CACAAAAGTACATTAAACAACCAGTTTTCACATAGAAAAAGACACAAGCGAGAGTTATTG
TCACAGGAAGAACCTTATAAGTCTCCTGTAGACAAAGGTGAACAAGTTCTGAATGTTGAT
CTAAAAGGATGGGATTCTTCTACTCGTTCTAAAGAAAATAAGGCCAGCTGTTTCTCAGAG
AAGTTTAAAGCCTCTCAAGCACAATCTTCATATACTCGAAGGCATGCAAATGGGCAGGCT
GTTGTTCTAGTGGATGAGGAGGATCCTGATGCAATTAAAGCGACAGAGCCAGTGGACCAA
GTAATTGAACGAAAGGCAATCACAATATACTATCCTTCACGGGTTGATCCCGAATCCGTT
GAAATTTGTTGTTCGGACATGGAATCTCTAGCACCTGAAGCATATTTGTCATCGACTATA
ATGAATTTCTACATCCGGTACCTCCAGAAGACAAAACCTCATGCAGATGTCAATGAGTAT
CACTTTTTCAATACATATTTTTACCAGAAGCTCAAAGAGGCTGTACTGAGCAAGAATGAA
AAGGAAGCTTCATTTATCAGACTAAGAAGGTGGTGGAAAGGGGTGAATATATTTGAGAAA
GCCTATATATTTCTTCCCATACATGAAGATCTTCATTGGAGCCTGGTTATAATTTGCATA
CCAGATAAAGAAGATCAACTGGGGCCAATTTTACTTCACTTGGATTCATTAGGGCTTCAC
TGCAGCAAGTCCCTCTTTGCTACCATAAGAAAATTTTTGGTAGAAGAATGGAAATTCTTA
AGACAAGGAGAAGTGCTAGCTCTTCCTATTTCAGACAAAATATGGGAAAATCTTCCACGA
AGAATTGATGAAAACATCATTCAGGTCCCACAACAAAGAAATGAGTATGACTGCGGTCTG
TTTGTTCTTTTCTTTATGGAGCGTTTCATTGACGAAGTTCATAGAAGGCTTAAAAAGAAG
GATTTGACCATGTTTGGAAGAAGGTGGTTCAAACCTGCCGAAGCCTCTTGTTTGAGGATG
AAAATCCGCAGAATACTCGAGGAAAAATTCAAGAATGTGAGTGAGAATGATTGA

Peptide Sequence

PEP ID

Solyc04g026200.3.1
PEP Infomation

Ubiquitin-like-specific protease 1D (AHRD V3.3 *-* ULP1D_ARATH)
Sequence

MDGEELKEGLSNLSDTELTDKIARLKKSLFSNIGVRLPDGGEKLRANIKLHEDELEWRKR
AVSKPANAFQEELYALNPCDHKSTLNNQFSHRKRHKRELLSQEEPYKSPVDKGEQVLNVD
LKGWDSSTRSKENKASCFSEKFKASQAQSSYTRRHANGQAVVLVDEEDPDAIKATEPVDQ
VIERKAITIYYPSRVDPESVEICCSDMESLAPEAYLSSTIMNFYIRYLQKTKPHADVNEY
HFFNTYFYQKLKEAVLSKNEKEASFIRLRRWWKGVNIFEKAYIFLPIHEDLHWSLVIICI
PDKEDQLGPILLHLDSLGLHCSKSLFATIRKFLVEEWKFLRQGEVLALPISDKIWENLPR
RIDENIIQVPQQRNEYDCGLFVLFFMERFIDEVHRRLKKKDLTMFGRRWFKPAEASCLRM
KIRRILEEKFKNVSEND*

Transcript Sequence

Transcript ID

Solyc04g026200.3.1
Transcript Infomation

Ubiquitin-like-specific protease 1D (AHRD V3.3 *-* ULP1D_ARATH)
Sequence

TGGGACATGTCTTTGTTCCTTCCCGCACCCCTCCCTTCTACCCCAATTTCACCACTTGAA
GTGAAAACAATAAAAATATTTCCCTGGATAGTAATTATGAGACCAAAAATGTAACTGCAA
TTAACAAGAATAACTTCATTTTTCTTCAAGGTGAGGCTTGCTTTCTGAATGAATTCCGCT
GCGCCCCTCAAAAGAGCTAAGAGCTGAGAAAGGGAATACCAATAGAGTGGGAGAAGATAT
TCAACAGCGACGACTCTCCGGCGGAGCTGGTGATTAACTCCGCCTTACCACGGCTGCCTG
CTGAAAAACAGTAATCGATCACCATGGACGGAGAAGAGCTCAAAGAAGGACTTTCGAACT
TATCAGATACAGAATTGACCGACAAAATTGCTAGGCTAAAAAAATCTCTCTTTAGCAACA
TTGGTGTTAGGCTACCCGATGGAGGTGAAAAGCTTAGGGCAAATATCAAACTGCATGAGG
ATGAATTAGAATGGAGGAAACGGGCAGTGTCTAAGCCAGCCAATGCTTTCCAAGAAGAAC
TATATGCTCTGAATCCATGTGACCACAAAAGTACATTAAACAACCAGTTTTCACATAGAA
AAAGACACAAGCGAGAGTTATTGTCACAGGAAGAACCTTATAAGTCTCCTGTAGACAAAG
GTGAACAAGTTCTGAATGTTGATCTAAAAGGATGGGATTCTTCTACTCGTTCTAAAGAAA
ATAAGGCCAGCTGTTTCTCAGAGAAGTTTAAAGCCTCTCAAGCACAATCTTCATATACTC
GAAGGCATGCAAATGGGCAGGCTGTTGTTCTAGTGGATGAGGAGGATCCTGATGCAATTA
AAGCGACAGAGCCAGTGGACCAAGTAATTGAACGAAAGGCAATCACAATATACTATCCTT
CACGGGTTGATCCCGAATCCGTTGAAATTTGTTGTTCGGACATGGAATCTCTAGCACCTG
AAGCATATTTGTCATCGACTATAATGAATTTCTACATCCGGTACCTCCAGAAGACAAAAC
CTCATGCAGATGTCAATGAGTATCACTTTTTCAATACATATTTTTACCAGAAGCTCAAAG
AGGCTGTACTGAGCAAGAATGAAAAGGAAGCTTCATTTATCAGACTAAGAAGGTGGTGGA
AAGGGGTGAATATATTTGAGAAAGCCTATATATTTCTTCCCATACATGAAGATCTTCATT
GGAGCCTGGTTATAATTTGCATACCAGATAAAGAAGATCAACTGGGGCCAATTTTACTTC
ACTTGGATTCATTAGGGCTTCACTGCAGCAAGTCCCTCTTTGCTACCATAAGAAAATTTT
TGGTAGAAGAATGGAAATTCTTAAGACAAGGAGAAGTGCTAGCTCTTCCTATTTCAGACA
AAATATGGGAAAATCTTCCACGAAGAATTGATGAAAACATCATTCAGGTCCCACAACAAA
GAAATGAGTATGACTGCGGTCTGTTTGTTCTTTTCTTTATGGAGCGTTTCATTGACGAAG
TTCATAGAAGGCTTAAAAAGAAGGATTTGACCATGTTTGGAAGAAGGTGGTTCAAACCTG
CCGAAGCCTCTTGTTTGAGGATGAAAATCCGCAGAATACTCGAGGAAAAATTCAAGAATG
TGAGTGAGAATGATTGATATTTTTGGGATTGGTACTGTGTACAGACAGCTGTAAAGTTGG
ATACTGTCGTCAGTCATACATCAACCATAAATAGGCAGAGGATATAGTAGAACTGATTGA
CCCATCCAATGGGAAGGAGAAATGCAGTAGACTTCCCTGGGAAATATATACATTGTCCAG
AAATCATAATTGAACAATCACCAAGAGGAAAAAACAGAAGATTTGGGCGATGCATCGGTA
TTGACATCTGCTGAAGCAAGTAGCCCCTAAAACCAGAAGCTGCAGCCATGTCCATTTCAA
AGATGGAAGGTATCTATGGATCACCAGTCCCCTCCCCCCTCTCTCGATTTGTGGCAGTTC
TCCTTCTGCTAAAAACAGTTTCACATGTTTGCATTTAAGCGAACAAAATAAGTAAAGTGA
AAGCTTTAGCTTAATGAAGAAACAACTTCTTTCCGTCCTTTTGGTTCAGGCTGCAGTTGT
TACTGCTGCTTCCCGCTTGATAGTTTATTAAATGAGCCAATTCAGTTGGGATCTATAGAA
CTTGTCTTCATATTCAAAATTTGCTCTGAAATGATGTTTTCACCTCAAGAATTATTTGCA
GAAGAAAAGATGGATGGGCTCTGCGCTTCCCAAACAAACCCTCCTAGACGTTGATTTATC
TTGGATTATGTAAGAAAGTTATTTTTTTATGTAAGGTCAGAGATGGTCTGAAACCAATAT
TTGATTATCTAATAGATCTTTCAATTCTATAGGAGAGTGTTTTCGCTTATGTAACAATAA
TGTACTGATCTTCATATTTTCATATTTGGTTAGTCAAAAAATATTTTTTCTAGG