Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g025940.3.1
CDS Infomation

Trehalose-6-phosphate synthase-6 (AHRD V3.3 *** A0A0S2A6P6_HEVBR)
Sequence

ATGGCATCAAGATCTAGTGCAAACTTTTTCGACTTGGCATCTGAGGACATACTGGATATA
CATCAGACTCCTAGAGCACTTCCGCGTATGATGACTGTTCCCGGGATAATTTCTGATGGC
TGTCGCAGCAATGATGGCGATTCAGATAGTATGTCATCTGCTTGTCATGAGCGAAAGATT
ATTGTTGCAAACATGCTGCCTTTGCATGCTCAAAGGGATACAACAGCTGAAAAGTGGTGC
TTTAGTTTGGACGAGGATTCACTTTTATTACAACTGAAGGATGGGTTTTCACCTGAAACT
GAGGTTATCTATGTGGGTTCTCTCAAGGTAGATGTAGAGCCCAGTGAACAGGAGGAAGTT
ACACAGCGATTACTTGAGGAGTACAAGTGTGTGCCTACCTTTCTACCTTGTGAAATCCAG
GAAAAGTTTTATCATGGTTTCTGTAAGCAACAACTGTGGCCTCTTTTTCACTACATGCTC
CCAATGTGCCCAGACCATGCAGATCGTTTTGACCGTCAGCTGTGGCAATCTTATGTCTCA
GCAAACAAGTTATTTGCTGATAAGGTTATGGAAGTGGTTAATCCCGAGGATGATTATATC
TGGGTTCAAGATTACCACCTCATGGTTCTTCCCACATTCTTAAGAAAGAGGTACCATAGA
GTGAAGCTTGGGTTCTTTCTTCATAGCCCATTCCCATCATCAGAAATTTACCGGACTCTC
CCAGTTAGGGATGAAATTCTAAAAGGATTATTAAACTGCGACCTGATTGGTTTTCATACT
TTTGATTATGCACGTCATTTTCTGTCATGCTGTAGTAGAATGCTAGGTCTAGATTATGAA
TCTAAGCGAGGTCACATCGGACTTGATTATTTTGGTCGTACAGTTTACATTAAAATTCTT
CCAGTAGGCATACATATGGGTCGACTTGAGTCTGTGTTGAATCGTTCTTCTACATTTGCT
AAAGCTAAAGAAGTTCAAGAGCAGTTCAAAGGGAAGAAAGTCATTCTTGGTGTGGATGAT
ATGGATATCTTTAAAGGTATTAGTTTGAAATTACTAGCTTTTGAACACCTTCTACAGCAG
CAAGAGGATTTGCAGGGTAAACTTGTTCTTGTCCAAATAGTAAATCCTGCTCGTAGCTCT
GGAAAGGATGTTCAGGAAGCAAAGAGGGAGACATATTCAACTGCCGAGAGAATCAATGAA
ATTTATGGTACTTCTAATTATGAGCCTGTAATTTTGATTGATCGTCCTGTTGCTCGATAT
GAGAAGACCGCATACTATGCTGTTGCTGAATGTTGCATAGTCAATGCAGTGAGGGATGGG
ATGAACTTAGTGCCTTACAAGTATATTGTCTGTAGGCAGGGCTCTCCTGGTATGGACGAA
GCTATGGGTATCAAAGTTGATTCTCCTAGAACTAGCATGCTTGTTGTGTCAGAATTTATT
GGTTGCTCACCATCGTTGAGTGGGGCAATTAGGGTAAATCCATGGGATATTGAAGCTGTG
GCTGAGGCTTTAAATGTTGCCATTACAATGACGAATTCTGAGAAAGAACTACGTCATGAG
AAGCACCACCGCTATGTGAGCTCTCACGATGTAGCTTATTGGGCTCGTAGTTTCATGCAA
GATTTGGAGAGAGCATGCCAAGATCACTATAGTAAGCGTTGCTGGGGCATTGGCCTGGGC
CTAGGTTTTAGAGTTATTGCACTTTCACCAAGCTTTAGAAAGTTGTCCTTAGATCACATT
GTTTCCTCATACAGGAGGACTCAGAGAAGGGCTATATTTTTGGACTATGACGGTACTGTT
GTACCTCAGTCATGTATGGTTAAAGCTCCAAGTGCCGAAGTTATTTCTCTTTTGAATGCT
CTAATTAATGACCCTAAAAACACCGTGTATATAGTTAGTGGCAGAGGAAGGACTTCATTA
TGTGAGTGGCTTGCACCATGCGAAAGGCTTGGAATAGCTGCTGAACATGGGTACTTCATA
AGGGATTGTAAAACTTCTGAATGGGATCATTTAGATTCTGATCTTGAATGGAAAGAAATT
GCGGAACCTGTGATGCAACTTTACACAGAAGCAACTGATGGATCATATATAGAATCTAAA
GAGAGTGCATTGGTGTGGCACCATTATGATGCAGACCCTGACTTCGGCTCCTGTCAGGCA
AAGGAATTGTTGGATCATTTGGAAAGTGTACTTGCAAATGAACCTGCAGTTGTTAAGAGG
GGTCAACATATTGTTGAAGTCAAGCCGCAAGGTGTTACCAAAGGATTAGTTGCTGCGAAA
GTTCTCTCTATGATGATTGATGGGGGGAAACCGCCTGATTTTGTGATGTGCATTGGAGAT
GACAGGTCGGATGAAGACATGTTTGAGAGCATATTAAGCACTATTTCCAGTTCGTCGGTC
AATGCTGCCCCTGACATCTTTGCCTGCACCGTGGGGCAGAAGCCAAGCAAAGCCAAGTAT
TACCTTGATGATACTGCTGATGTTCTTAAACTTCTTGGAGGTCTTGCTAATGCTTCTAAT
CCAAAGCCAATGGATACTGCTCAATTCCAGCTTGCCTTTGGTTCTGTTATTTGA

Peptide Sequence

PEP ID

Solyc04g025940.3.1
PEP Infomation

Trehalose-6-phosphate synthase-6 (AHRD V3.3 *** A0A0S2A6P6_HEVBR)
Sequence

MASRSSANFFDLASEDILDIHQTPRALPRMMTVPGIISDGCRSNDGDSDSMSSACHERKI
IVANMLPLHAQRDTTAEKWCFSLDEDSLLLQLKDGFSPETEVIYVGSLKVDVEPSEQEEV
TQRLLEEYKCVPTFLPCEIQEKFYHGFCKQQLWPLFHYMLPMCPDHADRFDRQLWQSYVS
ANKLFADKVMEVVNPEDDYIWVQDYHLMVLPTFLRKRYHRVKLGFFLHSPFPSSEIYRTL
PVRDEILKGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTVYIKIL
PVGIHMGRLESVLNRSSTFAKAKEVQEQFKGKKVILGVDDMDIFKGISLKLLAFEHLLQQ
QEDLQGKLVLVQIVNPARSSGKDVQEAKRETYSTAERINEIYGTSNYEPVILIDRPVARY
EKTAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGSPGMDEAMGIKVDSPRTSMLVVSEFI
GCSPSLSGAIRVNPWDIEAVAEALNVAITMTNSEKELRHEKHHRYVSSHDVAYWARSFMQ
DLERACQDHYSKRCWGIGLGLGFRVIALSPSFRKLSLDHIVSSYRRTQRRAIFLDYDGTV
VPQSCMVKAPSAEVISLLNALINDPKNTVYIVSGRGRTSLCEWLAPCERLGIAAEHGYFI
RDCKTSEWDHLDSDLEWKEIAEPVMQLYTEATDGSYIESKESALVWHHYDADPDFGSCQA
KELLDHLESVLANEPAVVKRGQHIVEVKPQGVTKGLVAAKVLSMMIDGGKPPDFVMCIGD
DRSDEDMFESILSTISSSSVNAAPDIFACTVGQKPSKAKYYLDDTADVLKLLGGLANASN
PKPMDTAQFQLAFGSVI*

Transcript Sequence

Transcript ID

Solyc04g025940.3.1
Transcript Infomation

Trehalose-6-phosphate synthase-6 (AHRD V3.3 *** A0A0S2A6P6_HEVBR)
Sequence

CTCATATCCTCATTTGGCTTTATCACTATCCATTTTCCTCTCTCCAGAAAAAATACTCCT
CCTCCTCTGATCTCTCTCTCTTACTGTTTCTTCTGTTGAAAGTTCGAATAAAACTCGTCG
GTTCGGTGTTTTTTGGTTTTAGCTGTAGATTTTATGTATCTGATAACCTTGACCTCTTCG
GAATTCATCGGTTTGTGACGTCAACGTTAGTTTTCCGGTCATCGGAATTGCATGTTTTAT
AGACTGCAGGAAAATTTGATTCAGCAATTACTGGGACACACTTTCCTTTGGTTTCACATA
TCTCAGCAGAACTTGTATGATATAACGTAAGCTAAGTTCTACTTCAGAGACATGGCATCA
AGATCTAGTGCAAACTTTTTCGACTTGGCATCTGAGGACATACTGGATATACATCAGACT
CCTAGAGCACTTCCGCGTATGATGACTGTTCCCGGGATAATTTCTGATGGCTGTCGCAGC
AATGATGGCGATTCAGATAGTATGTCATCTGCTTGTCATGAGCGAAAGATTATTGTTGCA
AACATGCTGCCTTTGCATGCTCAAAGGGATACAACAGCTGAAAAGTGGTGCTTTAGTTTG
GACGAGGATTCACTTTTATTACAACTGAAGGATGGGTTTTCACCTGAAACTGAGGTTATC
TATGTGGGTTCTCTCAAGGTAGATGTAGAGCCCAGTGAACAGGAGGAAGTTACACAGCGA
TTACTTGAGGAGTACAAGTGTGTGCCTACCTTTCTACCTTGTGAAATCCAGGAAAAGTTT
TATCATGGTTTCTGTAAGCAACAACTGTGGCCTCTTTTTCACTACATGCTCCCAATGTGC
CCAGACCATGCAGATCGTTTTGACCGTCAGCTGTGGCAATCTTATGTCTCAGCAAACAAG
TTATTTGCTGATAAGGTTATGGAAGTGGTTAATCCCGAGGATGATTATATCTGGGTTCAA
GATTACCACCTCATGGTTCTTCCCACATTCTTAAGAAAGAGGTACCATAGAGTGAAGCTT
GGGTTCTTTCTTCATAGCCCATTCCCATCATCAGAAATTTACCGGACTCTCCCAGTTAGG
GATGAAATTCTAAAAGGATTATTAAACTGCGACCTGATTGGTTTTCATACTTTTGATTAT
GCACGTCATTTTCTGTCATGCTGTAGTAGAATGCTAGGTCTAGATTATGAATCTAAGCGA
GGTCACATCGGACTTGATTATTTTGGTCGTACAGTTTACATTAAAATTCTTCCAGTAGGC
ATACATATGGGTCGACTTGAGTCTGTGTTGAATCGTTCTTCTACATTTGCTAAAGCTAAA
GAAGTTCAAGAGCAGTTCAAAGGGAAGAAAGTCATTCTTGGTGTGGATGATATGGATATC
TTTAAAGGTATTAGTTTGAAATTACTAGCTTTTGAACACCTTCTACAGCAGCAAGAGGAT
TTGCAGGGTAAACTTGTTCTTGTCCAAATAGTAAATCCTGCTCGTAGCTCTGGAAAGGAT
GTTCAGGAAGCAAAGAGGGAGACATATTCAACTGCCGAGAGAATCAATGAAATTTATGGT
ACTTCTAATTATGAGCCTGTAATTTTGATTGATCGTCCTGTTGCTCGATATGAGAAGACC
GCATACTATGCTGTTGCTGAATGTTGCATAGTCAATGCAGTGAGGGATGGGATGAACTTA
GTGCCTTACAAGTATATTGTCTGTAGGCAGGGCTCTCCTGGTATGGACGAAGCTATGGGT
ATCAAAGTTGATTCTCCTAGAACTAGCATGCTTGTTGTGTCAGAATTTATTGGTTGCTCA
CCATCGTTGAGTGGGGCAATTAGGGTAAATCCATGGGATATTGAAGCTGTGGCTGAGGCT
TTAAATGTTGCCATTACAATGACGAATTCTGAGAAAGAACTACGTCATGAGAAGCACCAC
CGCTATGTGAGCTCTCACGATGTAGCTTATTGGGCTCGTAGTTTCATGCAAGATTTGGAG
AGAGCATGCCAAGATCACTATAGTAAGCGTTGCTGGGGCATTGGCCTGGGCCTAGGTTTT
AGAGTTATTGCACTTTCACCAAGCTTTAGAAAGTTGTCCTTAGATCACATTGTTTCCTCA
TACAGGAGGACTCAGAGAAGGGCTATATTTTTGGACTATGACGGTACTGTTGTACCTCAG
TCATGTATGGTTAAAGCTCCAAGTGCCGAAGTTATTTCTCTTTTGAATGCTCTAATTAAT
GACCCTAAAAACACCGTGTATATAGTTAGTGGCAGAGGAAGGACTTCATTATGTGAGTGG
CTTGCACCATGCGAAAGGCTTGGAATAGCTGCTGAACATGGGTACTTCATAAGGGATTGT
AAAACTTCTGAATGGGATCATTTAGATTCTGATCTTGAATGGAAAGAAATTGCGGAACCT
GTGATGCAACTTTACACAGAAGCAACTGATGGATCATATATAGAATCTAAAGAGAGTGCA
TTGGTGTGGCACCATTATGATGCAGACCCTGACTTCGGCTCCTGTCAGGCAAAGGAATTG
TTGGATCATTTGGAAAGTGTACTTGCAAATGAACCTGCAGTTGTTAAGAGGGGTCAACAT
ATTGTTGAAGTCAAGCCGCAAGGTGTTACCAAAGGATTAGTTGCTGCGAAAGTTCTCTCT
ATGATGATTGATGGGGGGAAACCGCCTGATTTTGTGATGTGCATTGGAGATGACAGGTCG
GATGAAGACATGTTTGAGAGCATATTAAGCACTATTTCCAGTTCGTCGGTCAATGCTGCC
CCTGACATCTTTGCCTGCACCGTGGGGCAGAAGCCAAGCAAAGCCAAGTATTACCTTGAT
GATACTGCTGATGTTCTTAAACTTCTTGGAGGTCTTGCTAATGCTTCTAATCCAAAGCCA
ATGGATACTGCTCAATTCCAGCTTGCCTTTGGTTCTGTTATTTGAGTCGGTCAAGGATGC
AGACAACTTTGATATAGAAATTAGAAAGTATCATTAGGGCTAGAGTTCTTTTTAAAATAT
AGTTTCATAGTAGTGATTGTGCCTGCCTGAATTATTTACAGGCACTGATAACTTAACTTG
TACATATATATGACTCTTTAATATGAGAACTTGGTTTATTTTCTCTTAGGAAGCTCCGCG
AAGACGCATCAAGTGAGTTCTTCATATCATTGTGAAATGTGCACGTTGTACCGAGATGAG
GTACCTTATTAAGTGACTATGGTACAGGGAATCTTACCTTAGTTCAATTGGTTGGCTTCT
TGAATTTTTACCTTTTTGGTGACGGGATGGGTTTGATTCCTCTCTGCATATGGCGCCTGT
AGTGGTTTTCATACATTCCAGACGTCCCAAGTTAACCCCAGCCCTTAGGCCAAACATATG
TAAAACTCCTTTGTCCTTAAATTTCATTGACACTCAACCCCATTTTAACCCTTCAACTCC
AATTTTTATGTTTCACTTTAGCACTTCT