Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g017650.3.1
CDS Infomation

PAX-interacting protein 1 (AHRD V3.3 *** W9RS25_9ROSA)
Sequence

ATGGCACCCAAAAAACCCTCTTCTTCTCCAATACCCATCGGAAATTGCGAGGTTGTTGTG
GAAGCTGGGAAGTTTAATTCAGAGTTAAACGAAAATAGTCTCAATATTTCTTTGTCAAAG
AATGTCAAAGTCAAAATTTCTGTTGTGGATGGTGGGAATCATTCAGAGGAATGCAGAAAC
CCTATTGAGTATGATGAAAATGGAAATTATTGTTTTGTGCTCATTAATCCCAAAGATGAT
GATGGAAAAACCAAGTCTTTACTTCAGGAAGTATTAAGCATTTATTCTAAAGAGCTTCCG
GCCATGAACTATGCTGCAAACACAGGAAAAGAATCACAATTCCTTGAAAGATGTGTATCA
AATGGGAAGTACTGCACGCTAGTTCTGAAAACCAAGGATGACATAGACCCTGGGGAGGTT
ATTGCAGCAATCACTTATCAAATAATTCCAGCTGATATGCAATTTGCTGAGGTTCCTATT
GCTGCTGTTAAATCAGTTTACCAACTCAAGGGGATTGGTTATTCAATCTATTTGGAGCTG
AGGAAAAGATTGCGACATGTGGGTGTTCGAACAGTACTTTGTTGGGGAGATAAGGAGTCT
GAAGGATTTTGGCTTAAGCAGGGTTTTTCAGTTATTGGTCAAGTTGACACGAAAGGCAGA
GCTCGCAAGCTCCCTATCAAGGCTGATATTCGGAAAGCATTGTGCTTTCCTGGTGGTTCA
AATCTCATGATTTCTCATTTCAATAAGGATAACTTACACAGTTCTGCAGTGTATCTAAAT
CTGAAATTCCCCTTAAAGCCTTTAAGAGAGGATTGCCAATCTCCAATTCTCCAAGAACAA
AGGGATACTCTGTCTGAGGGAAATAACCATTCTCCAGGAAGAAGTCAGGCCACTAAAACC
ATGGGTTCTAACTACTACGATTGCCAAGATTTTCAACCTGGAGATGGTGCTGTCGGAAGC
AAACATGGACATATAGGATTTAATGAAATGGAAAGCCAAACTCTTCTGAAGAAATGTTCC
TGTTCAGCGTCAGAATCAAACAAAAGGACTTGGGAAACCTCACACACTTGTGTTAAATCC
AAAAAAATAAAGGGAGGTCATCAAACTGACTGTGACTTGCATTCTAAGGACATTAGCTTA
GAAAGTGTTTCGGGGAACAGTTTTTCTGCTATCTCTAAGAGCAAATGTCAGGTAGGTATT
ACTCCCAAGGATCATTTGACAAGCCACTTTCTGGAAAAGAATGCTGTAGAAGCTACAGCA
GATAATTTGACATATGAAGGGAATAGTAGTCGAGTCATTTCTTCAAGAGGGACAAACTTC
AGAATTATGCTGATGAACATTGCTGATGATAGTAAAAAGGCAAATTTGACCAAGATAATA
GGAGACCTTGGTGGAGATGTTACTGCTGATGGAAGTTCAAGCACACACGTAGTCACTGGC
AAAGTGAGGAAAACTTTGAATTTCTGCTCAGCTCTCTGCTCAGGAGCTTGGATATTGTCA
CCAAATTGGTTGAAAGAAAGTTTCCGAAATGGCAAATTTTTAGATGAAATGCCTTTTATT
TTGAGGGATGAAGACTATGAACTTAAGTACAGAAGTGCGCTAAAAAGGGCAGTTCTTAGA
GCAAAAGCATACCCCCAAGCTCTTCTCAAGGGTTATGACATATGTCTTGCAACTCATGTT
CATCCTCCAGTTGGTACCTTATCAGCCATTGTAAAATCTGCAGGAGGCAATGTTATACGT
GGACTCAATCAAGTGAAAGATGAATGTAAAACTATATTTGTTGCTTGTGAAGAAGACATG
GATGAAGCATTGTCAGCAGTGAAAAAGGGAATATGGACTTTCAGCAGTGACTGGTTTATG
AACTGCATCATGAAACAAGAGCTTGACTTAGGAGCTCCTCAATTTGCAGAGTGCCTCTAA

Peptide Sequence

PEP ID

Solyc04g017650.3.1
PEP Infomation

PAX-interacting protein 1 (AHRD V3.3 *** W9RS25_9ROSA)
Sequence

MAPKKPSSSPIPIGNCEVVVEAGKFNSELNENSLNISLSKNVKVKISVVDGGNHSEECRN
PIEYDENGNYCFVLINPKDDDGKTKSLLQEVLSIYSKELPAMNYAANTGKESQFLERCVS
NGKYCTLVLKTKDDIDPGEVIAAITYQIIPADMQFAEVPIAAVKSVYQLKGIGYSIYLEL
RKRLRHVGVRTVLCWGDKESEGFWLKQGFSVIGQVDTKGRARKLPIKADIRKALCFPGGS
NLMISHFNKDNLHSSAVYLNLKFPLKPLREDCQSPILQEQRDTLSEGNNHSPGRSQATKT
MGSNYYDCQDFQPGDGAVGSKHGHIGFNEMESQTLLKKCSCSASESNKRTWETSHTCVKS
KKIKGGHQTDCDLHSKDISLESVSGNSFSAISKSKCQVGITPKDHLTSHFLEKNAVEATA
DNLTYEGNSSRVISSRGTNFRIMLMNIADDSKKANLTKIIGDLGGDVTADGSSSTHVVTG
KVRKTLNFCSALCSGAWILSPNWLKESFRNGKFLDEMPFILRDEDYELKYRSALKRAVLR
AKAYPQALLKGYDICLATHVHPPVGTLSAIVKSAGGNVIRGLNQVKDECKTIFVACEEDM
DEALSAVKKGIWTFSSDWFMNCIMKQELDLGAPQFAECL*

Transcript Sequence

Transcript ID

Solyc04g017650.3.1
Transcript Infomation

PAX-interacting protein 1 (AHRD V3.3 *** W9RS25_9ROSA)
Sequence

CAACTCTTCATTTCCCACCATTTTTTTCTCCATTTTTCAAACAACAAAAACAATGGCACC
CAAAAAACCCTCTTCTTCTCCAATACCCATCGGAAATTGCGAGGTTGTTGTGGAAGCTGG
GAAGTTTAATTCAGAGTTAAACGAAAATAGTCTCAATATTTCTTTGTCAAAGAATGTCAA
AGTCAAAATTTCTGTTGTGGATGGTGGGAATCATTCAGAGGAATGCAGAAACCCTATTGA
GTATGATGAAAATGGAAATTATTGTTTTGTGCTCATTAATCCCAAAGATGATGATGGAAA
AACCAAGTCTTTACTTCAGGAAGTATTAAGCATTTATTCTAAAGAGCTTCCGGCCATGAA
CTATGCTGCAAACACAGGAAAAGAATCACAATTCCTTGAAAGATGTGTATCAAATGGGAA
GTACTGCACGCTAGTTCTGAAAACCAAGGATGACATAGACCCTGGGGAGGTTATTGCAGC
AATCACTTATCAAATAATTCCAGCTGATATGCAATTTGCTGAGGTTCCTATTGCTGCTGT
TAAATCAGTTTACCAACTCAAGGGGATTGGTTATTCAATCTATTTGGAGCTGAGGAAAAG
ATTGCGACATGTGGGTGTTCGAACAGTACTTTGTTGGGGAGATAAGGAGTCTGAAGGATT
TTGGCTTAAGCAGGGTTTTTCAGTTATTGGTCAAGTTGACACGAAAGGCAGAGCTCGCAA
GCTCCCTATCAAGGCTGATATTCGGAAAGCATTGTGCTTTCCTGGTGGTTCAAATCTCAT
GATTTCTCATTTCAATAAGGATAACTTACACAGTTCTGCAGTGTATCTAAATCTGAAATT
CCCCTTAAAGCCTTTAAGAGAGGATTGCCAATCTCCAATTCTCCAAGAACAAAGGGATAC
TCTGTCTGAGGGAAATAACCATTCTCCAGGAAGAAGTCAGGCCACTAAAACCATGGGTTC
TAACTACTACGATTGCCAAGATTTTCAACCTGGAGATGGTGCTGTCGGAAGCAAACATGG
ACATATAGGATTTAATGAAATGGAAAGCCAAACTCTTCTGAAGAAATGTTCCTGTTCAGC
GTCAGAATCAAACAAAAGGACTTGGGAAACCTCACACACTTGTGTTAAATCCAAAAAAAT
AAAGGGAGGTCATCAAACTGACTGTGACTTGCATTCTAAGGACATTAGCTTAGAAAGTGT
TTCGGGGAACAGTTTTTCTGCTATCTCTAAGAGCAAATGTCAGGTAGGTATTACTCCCAA
GGATCATTTGACAAGCCACTTTCTGGAAAAGAATGCTGTAGAAGCTACAGCAGATAATTT
GACATATGAAGGGAATAGTAGTCGAGTCATTTCTTCAAGAGGGACAAACTTCAGAATTAT
GCTGATGAACATTGCTGATGATAGTAAAAAGGCAAATTTGACCAAGATAATAGGAGACCT
TGGTGGAGATGTTACTGCTGATGGAAGTTCAAGCACACACGTAGTCACTGGCAAAGTGAG
GAAAACTTTGAATTTCTGCTCAGCTCTCTGCTCAGGAGCTTGGATATTGTCACCAAATTG
GTTGAAAGAAAGTTTCCGAAATGGCAAATTTTTAGATGAAATGCCTTTTATTTTGAGGGA
TGAAGACTATGAACTTAAGTACAGAAGTGCGCTAAAAAGGGCAGTTCTTAGAGCAAAAGC
ATACCCCCAAGCTCTTCTCAAGGGTTATGACATATGTCTTGCAACTCATGTTCATCCTCC
AGTTGGTACCTTATCAGCCATTGTAAAATCTGCAGGAGGCAATGTTATACGTGGACTCAA
TCAAGTGAAAGATGAATGTAAAACTATATTTGTTGCTTGTGAAGAAGACATGGATGAAGC
ATTGTCAGCAGTGAAAAAGGGAATATGGACTTTCAGCAGTGACTGGTTTATGAACTGCAT
CATGAAACAAGAGCTTGACTTAGGAGCTCCTCAATTTGCAGAGTGCCTCTAATAGATAAA
CTATGTGCAAACTGGTCTGGCAAATATGAAAAAATGTGAATATCTTTCCAAAACTTTTCA
ACTTCTAAAACTATTTTTCCAAAGTTTCAACCAAGTCTATCTCCAAATGCCTACTCAATT
AATGATGGAAAAAGTAAGTCATAGACTTTAGATTTTTAATCTTCCGTCTGCTGTAAATTT
ATCATCATATTTTCAAGACAAGCAAAATGAAATGACACATACAAAGCATGACTGCTCTGT
TGGCTGTTTGAGATCAAAACATGGCTATAAGTTATATGAGCATGTTATCACAAGAGGCTG
TGCTGCTTTTCAACAAATCCATTCTAAGAAGTTTTGACAAATTCAATTCCATGAGTTTAC
ATCAAGTGAACTCATTTAACATTTCCATATTCTACTATTGTAATAAGTACACAATAAAGA
TACAACGAGTACATGAATTACATACAAATATGCAGCCCAACAAGGGCCTTGTTATTGTTT
AATCAAATACAACGACAATCAAAATACAACGAATACATGAAAAAGTACAAATATGCAGCC
GAACAAGGCCTTGTTATTGACTTATTCAAATACAAACACAATCACGATACAACGTGGAAT
GAAATACTGATAGCGGGGTACACAGTCAGTCAGTCTTTTGTTATGTCTGAATTTCTGTGA
AGACAGTCTGAATTACAGTCATACTAACCGTGAAAATAACAGCAAGGAAACTCCATGGAC
TTTCTTCAAATCTGTGATTGAGAAAGGTTGATGATATTCTTCTTCTTCTTCTTTTTCGAC
ATCATGATCTTTAAATAAAACATTGATTCACAGGTCTCTATAAAATTGAAGAAGATGTAC
AGGAAGTGGAGCATCATGAAAGAAAACTTTGTTGATATAATTATCAAGTATAGGAAGAGG
AATTTGAAGCTGGAAAGTAAACTCTTCACATTTGAGTGCGCATGCTATTGATTTTGAAGC
AATAAAATGTCACACCACACCAAATCTCTATCACGTTTCTTCATGATATTAAACCAGCTC
CTCTTGCCAGTACTAGTGATGAAGTAAATAATATCGCGGAACATCATCTGACACCACTCA
CTGTCTGAATAATGTTCATCATAAAAATCTCGAGCACTGAGCAAGTACTCTTGTTCAACA
CTTTTTCAAGGGATGCCAGCAGCAGCTCCTCATCTGATGAGCAATTTCTTATTCAACAAG
CGTAACAATTCCCTCACCGCTTTCTGCTTGGAATTCTCCATGGGTGCATAGAGAGATTTT
CTATAGTGAATGGAAACCACACGGGGCACGTACTACTTGTCATAATCTTCTTCACCAATA
CATTTAACAAGTGTATCTGGAATACGAAAATGTACTTTCTATGTCAACTCTTCATGTGGT
GCTGTACCTAACGCGTCAAGTCAGGTAAATCAATGATAGAATGTAAACCAGTTAGTCTCT
TCGGATGATATCATCGATCTCAGCCTGAAGAATATACGTCCAAAGAGACGTTAACATCAG
TTTTCGTTGGACCATCCCCAACTTATATAAATATGTTCTTTTTATGTGTTAGAGATGAAC
ACAATATGACTAGTAAGAAACA