Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g016530.3.1
CDS Infomation

DNA-(apurinic or apyrimidinic site) lyase (AHRD V3.3 *** K4BQF3_SOLLC)
Sequence

ATGTTACAATCTTTTAAGTTTGGTCTTTACAATTTCATCACTTCCAATAGTGTTGGAGTC
ATTTCAAGGATACCCAAGTTTCAGGTTTTGGTTTCTGTGAATTTGACAATAATGGGGTCT
AAAAAAAGACCCTTTTCAACCTCATCAGCTACTGGAAAATCAAATGAACAAGTGAGTGTT
GCAGCTGAAAAGGGTGTTTCAAAGGAAAATGTTGGCAAGAGTGGGGAGATTCTTGTGGAG
GATATGGGAACAGTAGAGAAAATGACTGTTCCTCAGCTCAGAGTAAAACTTAGGAGTCTT
GGGATTCCTTCCAGAGGTACTAAGCAAGAACTTGTTGCTTCTTTGAAGACTTTCCTCGAC
AGCAAACTTGATGATGCAGGCAATGGATCTGTGGCACAGGAGGATAAAGTATCATCTGAG
GAGAGTCTAGAAGTAGCAGCTAACCCTTCAAAAAAGAAGTCCAGAAAATTGCCAAGTAAG
AATCGCAACCAAAGCAACGTCACATCTGAGGTTCCTACTACTCGGCAGACGAAAAGACGA
GTCACAAAAGGCCAGACTGAGGATACCAGTTTTGACATTATTGTTAAACAAACTGAAATT
ACCCAAGAAATGTCCATTGAATCTAATGATATCAAAGGCAAGAAAAATGTACGAGCAAAG
AGAAAAGTTTCATCGGCGACTGTTTCAGCACACATAGGAGTTTCTGAGGCTGCTGATCTT
TCTGTAAATCAAGATGAACCTTGGACTATTTTCGCTCACAAGAAGCCCAAAGATGGGTGG
ATTGTATACAATCCTAAAACAATGAGGCCACCTCCTCTTTCAAAGGATACTAAACATGTT
AAGTTATTGTCTTGGAATGTCAATGGTCTGAGGGCTCTATTAAAGTTGAAGAATCTTTGC
ATACAGCAGCTTGCTGATAGAGAAGATTTTGATGTAATATGCCTACAGGAGACTAAACTA
CAGGAAAAAGACGTTGAAGCGATCAAGGAAAGTCTCCATGACTATAAGAATAGCTTTTGG
ACATGCAGTGTCTCTAAGCTTGGATATTCTGGTACTGCAATCATCTCACGAATTAAACCA
GTTTCTATCAAATATGGTCTCGGTATACCAGATCATGATACTGAAGGACGACTTGTTACG
GTGGAATTTGATAACTTCTATTTGTTGTGTGGATATGTTCCAAATTCTGGTGATGGACTA
CGCCGATTGACATACAGAATTACAGAGTGGGATCCTTCTCTTGGCAGTTACATGAAAGAG
CTAGAGGAGTCGAAACCTGTTGTTTTGACCGGTGATCTAAATTGTGCCCACGAGGAGATA
GATATTTATAATCCTACTGGAAATAAAAGAAGTGCAGGCTTTACTGAAGAAGAAAGACAG
TCTTTCGAAACGAACTTTCTAAACAAGGGGTTTGTAGATACATTCAGGAAGCAGCATCCT
GGTGTCGTTGGTTATACTTATTGGGGTTACCGCCATGGTGGACGTAAAACTAATAAAGGA
TGGCGGCTTGACTACTTCCTTGTCTCGGAATGCATTTCTGAGAAGGTGCATGACTCGTAC
ATTCTGCCAGATGTAGATGGCAGTGATCACAGTCCCATTGGCCTTGTCCTGAAGCTGTAG

Peptide Sequence

PEP ID

Solyc04g016530.3.1
PEP Infomation

DNA-(apurinic or apyrimidinic site) lyase (AHRD V3.3 *** K4BQF3_SOLLC)
Sequence

MLQSFKFGLYNFITSNSVGVISRIPKFQVLVSVNLTIMGSKKRPFSTSSATGKSNEQVSV
AAEKGVSKENVGKSGEILVEDMGTVEKMTVPQLRVKLRSLGIPSRGTKQELVASLKTFLD
SKLDDAGNGSVAQEDKVSSEESLEVAANPSKKKSRKLPSKNRNQSNVTSEVPTTRQTKRR
VTKGQTEDTSFDIIVKQTEITQEMSIESNDIKGKKNVRAKRKVSSATVSAHIGVSEAADL
SVNQDEPWTIFAHKKPKDGWIVYNPKTMRPPPLSKDTKHVKLLSWNVNGLRALLKLKNLC
IQQLADREDFDVICLQETKLQEKDVEAIKESLHDYKNSFWTCSVSKLGYSGTAIISRIKP
VSIKYGLGIPDHDTEGRLVTVEFDNFYLLCGYVPNSGDGLRRLTYRITEWDPSLGSYMKE
LEESKPVVLTGDLNCAHEEIDIYNPTGNKRSAGFTEEERQSFETNFLNKGFVDTFRKQHP
GVVGYTYWGYRHGGRKTNKGWRLDYFLVSECISEKVHDSYILPDVDGSDHSPIGLVLKL*

Transcript Sequence

Transcript ID

Solyc04g016530.3.1
Transcript Infomation

DNA-(apurinic or apyrimidinic site) lyase (AHRD V3.3 *** K4BQF3_SOLLC)
Sequence

AAGATTCGCACTTCCAAAATACTCCTACACCATTTGCTGCCTCCTTAGGCGGTTCACCCC
ACCCCCCTCAACCCCCACCCCACCCCTTCCCCCCATAGAAAGGAATTAAACTTTCTTTTT
CTTCTTCATATAGTGATCTTATTACAATCAATGTTACAATCTTTTAAGTTTGGTCTTTAC
AATTTCATCACTTCCAATAGTGTTGGAGTCATTTCAAGGATACCCAAGTTTCAGGTTTTG
GTTTCTGTGAATTTGACAATAATGGGGTCTAAAAAAAGACCCTTTTCAACCTCATCAGCT
ACTGGAAAATCAAATGAACAAGTGAGTGTTGCAGCTGAAAAGGGTGTTTCAAAGGAAAAT
GTTGGCAAGAGTGGGGAGATTCTTGTGGAGGATATGGGAACAGTAGAGAAAATGACTGTT
CCTCAGCTCAGAGTAAAACTTAGGAGTCTTGGGATTCCTTCCAGAGGTACTAAGCAAGAA
CTTGTTGCTTCTTTGAAGACTTTCCTCGACAGCAAACTTGATGATGCAGGCAATGGATCT
GTGGCACAGGAGGATAAAGTATCATCTGAGGAGAGTCTAGAAGTAGCAGCTAACCCTTCA
AAAAAGAAGTCCAGAAAATTGCCAAGTAAGAATCGCAACCAAAGCAACGTCACATCTGAG
GTTCCTACTACTCGGCAGACGAAAAGACGAGTCACAAAAGGCCAGACTGAGGATACCAGT
TTTGACATTATTGTTAAACAAACTGAAATTACCCAAGAAATGTCCATTGAATCTAATGAT
ATCAAAGGCAAGAAAAATGTACGAGCAAAGAGAAAAGTTTCATCGGCGACTGTTTCAGCA
CACATAGGAGTTTCTGAGGCTGCTGATCTTTCTGTAAATCAAGATGAACCTTGGACTATT
TTCGCTCACAAGAAGCCCAAAGATGGGTGGATTGTATACAATCCTAAAACAATGAGGCCA
CCTCCTCTTTCAAAGGATACTAAACATGTTAAGTTATTGTCTTGGAATGTCAATGGTCTG
AGGGCTCTATTAAAGTTGAAGAATCTTTGCATACAGCAGCTTGCTGATAGAGAAGATTTT
GATGTAATATGCCTACAGGAGACTAAACTACAGGAAAAAGACGTTGAAGCGATCAAGGAA
AGTCTCCATGACTATAAGAATAGCTTTTGGACATGCAGTGTCTCTAAGCTTGGATATTCT
GGTACTGCAATCATCTCACGAATTAAACCAGTTTCTATCAAATATGGTCTCGGTATACCA
GATCATGATACTGAAGGACGACTTGTTACGGTGGAATTTGATAACTTCTATTTGTTGTGT
GGATATGTTCCAAATTCTGGTGATGGACTACGCCGATTGACATACAGAATTACAGAGTGG
GATCCTTCTCTTGGCAGTTACATGAAAGAGCTAGAGGAGTCGAAACCTGTTGTTTTGACC
GGTGATCTAAATTGTGCCCACGAGGAGATAGATATTTATAATCCTACTGGAAATAAAAGA
AGTGCAGGCTTTACTGAAGAAGAAAGACAGTCTTTCGAAACGAACTTTCTAAACAAGGGG
TTTGTAGATACATTCAGGAAGCAGCATCCTGGTGTCGTTGGTTATACTTATTGGGGTTAC
CGCCATGGTGGACGTAAAACTAATAAAGGATGGCGGCTTGACTACTTCCTTGTCTCGGAA
TGCATTTCTGAGAAGGTGCATGACTCGTACATTCTGCCAGATGTAGATGGCAGTGATCAC
AGTCCCATTGGCCTTGTCCTGAAGCTGTAGTAGGTTCCAAGTACCAGCCACCGTTTTTGC
TAATTCCAACATCTTTGATCGTCTTCTCAAAGAATATGGAACCGGAGATTATTTTCAGGA
AGCTAACATGGAGTACATATTTGGCTCATAAGGCTATTTGACATATAAATGGTGAATCCT
GATTTTTGTGAAGTGGCATACAGGATGCTCACATGTTCAGCTATTTTTGATGCCTTGTTG
ATTCACAGAGGAAGCAAATGTGAGCGTCATAATACTCCTGTTGTAACTTATGTTTTTTGT
TTAACCCTCCGGAGTTTGGAACTTACTGATACCTAACTAATTTGGATTCACATCGTAGAA
AGTATACTGTGGTGATGTTAGTGGTCTCCCTATTTTTGCCTGAGCACACTGGTTGGCCTA
GTTCGAATTTCATCACGTGCTCATAATCTATTGATCTAATTAATTTGAATTTGCGTTGCG
AAAAAACCTATTATATAGTGGTTTAGTGTTTCCTATTTTGCTCAGCATTCAAAAACATTG
TGGTTTCCATTTTGTAATTATAATTTATGATTTGATTAAATTAGTTTGAATTTGTAGTCG
TGAAGCTCATTTGTTTGTGCAGGCCTTATCGCTACTTAAGGTTATTTTTTAGACCCTTGC
TCGTATAATCATATTAAAAATTATGTAAAAAGCAAAATATATGTGAAGAAATCATAGTGA
AAATACTTTGAAAAGAGAACAAATAACAATAACAAACAACTCACACACACAAGTACTACA
TAAATCGAAGAAAAGAAGATTAGGCTTTGTTTGGTTGCATAAGAAGTTATCTAATGATTA
ATTGCTTCTTTCGTCCCTAATTATTTGTTCATTTTTAAATCGGTACATCTATTAAGGAAA
CATTTATTATTTTTTTGTTAATAACTGTGAAAATTACCATTACAAAAACAAGAATCATTT
ACAGAATTAGGAGCATCTAGTATCACCACCCCTTCTAGGAAGGTTGTAGCAAGTATCTAG
ATCCCAAGAAAAAACAAAACAAAAAAAAATTAAACAAACTATTCCAACCACCTATTTATA
AATTCTAGACATTAAGTTAATGCATATATGAGCTCTTTTTGAACAGTGTAACATATCTAT
CCTCTCCCTTTGGATCTGTGCTATAACAAAACTCGTAATTACATGTATGTTTCTGAAAAT
CTTCATG