Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc04g016240.3.1
CDS Infomation	Nucleoporin interacting component (Nup93/Nic96-like) family protein (AHRD V3.3 *** AT2G41620.1)
Sequence	ATGGCGAACGACGTAGACATGAGTGGATGGAGTGAGCTTCTTCATTCTTCTTCGAAGCTT CTAGAACAGGCTGCTCCTTCAGCTCAGTTTCCTCCGCTTCAGAGGAATTTGGATCAATTG GAAGCATTAACAAAGAAATTGAAGGCTAAAACTTTAAGAACTGAAGCTCCGACTCAATCT ATTGCAGCAACTAGGCTACTAGCTCGTGAGGGTATCAATGCAGAGCAGCTTGCTCGTGAT CTCAAGTCTTTTGAGTTAAAGACGACATTTGAAGACGTTTTTCCTGCGGAGGCAACAACT GTTGAAGAGTATTTGCAACAGATCCATGAAATGGCAATGGTCTCTGCGGTTCAAGAAGCT CAGAAGGATAACCTAAAAAATTTCAATGATTACATGATGAAAGTTTTAGAGAACGACTGG AAGAAAGAAAAGAGAGACTTCCTCCAGAGCCTAAGCCGAATTTCAACCTTACCTAGGACA AATATCAGTGAATCAAGCCCTCTACGTGGTCGTCAGGGACAAATAGCATCTTTGACATAT AGCCCTCAGATTTCATCTGGTCCTTCTAGCATGGAGCCTTTAGCATTAACTAATAGGCCC ATCGTTGAGAAAAAAGCTGCTGCATATGGAGAAGTTGTCAAGAATCTCACTAGTGCAAGA GAGCGTGGTTTACCCTTTAAACCTGCTACAGCTTTTAAGTGTGCTCTTGAGAGTTTGGGT CTTAATGCATCTGGTGGGAAGTCAGTTGGCATTCAGAAGATCTGGCATCTATTGTCGTCT CTGATGGGTGAAGATTCAGCTGTTCAACGTAATGTTTCAAAGAAAATGTCTTTAGTAATT GGAGCTAGACGTCACCTAGAATGGGGTCATGAGAAGTACATCATGGAGACAATTCAAGCC CATCCTGCTCAGGCTGCACTTGGTGGTGCTGTTGGTAATTTGCAGAGAATCCGTGCCTTT CTCAGGATCCGTCTAAGGGACTACGGGGTTCTTGATTTTGATGCGGCTGATGCCCGTAGA CAGCCTCCCGTTGATACCACCTGGCAGCAGATATACTTTTGCATGAGAACTGGCTACTTC AATGAAGCAAGAGAGATTTCCCAACAATCTCGCATGTCCCACCAGTTTGCACCTCTGCTT ACAGAGTGGATTTCCACTGGAGGCATGGTATCAGCAGAGATGGCAGCGGTTGCTTCAGAA GAGTGTGAGAAGATGTTTAGGTTGGGTGATCGAGGAGGTCGACCCACGTATGATAAGAAA AAGTTGCTACTCTACACCATAATTTCTGGTTCTCGCAGGCAAATTGACAGATTTCTTCGA GAATTCCCTACGCTTTTCTCTACTATAGAGGATTTCTTGTGGTTCCAATTATCTGCTGTA CGTGAGTCCCCTGCCAGGTCTTCTGCTGTCCTTAGTGAGGGGTTGGCACCTTACACTTTG GATGATTTGCAAGCTTACCTAAACAAGTTTGAGTCATCACACTATACTAAGAATGGAAAG GATCCTTTGGTTTATCCGTATGTTTTACTTTTAAGCATTCAACTTCTTCCAGCCGTCCTA TATTTGTCCAAGGACATGGGAGACGAGGGGTATAATGTAGATGCTGTTCATATGGCTATT GTCTTAGCGGACTATGGGGTCCTCTCTGAAGGTACATGGGTAGGTCAAAAATTTGGGGTC ATGGATGCTTTTGCTGAAGCCTCTAGTATAATTAGGCAGTATGGATCATTTTACCTGCGT CATGGTGATCTGTTAATGTCACTGGAGTACTATGTGCAAGCTGCAGCAGCAGTGGGTGGT GGGCAGTTGTCGTGGAGTGGACGTGGTAATATTGATCAGCAAAGGCAAAGGACTTCAATG TTGAAACAACTTCTTACAGAGCTATTGTCGCGGGATGGTGGTATTGATATTTTACTTGGT CCCAGGGGTACTGGGGAAGAAGGTCAACTTGGAAGGTTTTTGACTGATGAAAAGACAAGA CAACAATTTCTGCTTGAAGCTGCTCGGCAGTATCAGGATGCGGGGCTCTATGACAAGTCC ATCGAGATTCAGAAGAGAGTGGGGGCATTTTCAGCTGCATTGGATACGATAAACAAGTGC CTTTCTGATGCAATATGTGCCTTGGCACGTGGAAGGTTGGATGGGGAAAGCCAGACTTCT GGGCTTATTCTTTCAGGAAATGAGATCCTGGAGATGTTCAAATATTACCCTGAGATCAGT CCCCAAGAGAGAGAAAATGTGTTGGCACAGCAAATTGTTCTAAGACAGCTGGAGGCTGTG CTATCCATTCATAAGCTTGCAAGACTTGGAAATCACTTGGATGCTATAAAAGAAGTAGCG AAGCTCCCATTCCTTCCTTTGGATCCAAGGACGCCTGATTTCACAACGGATATCTTTCAA AATTTGTCTCATCATGTCCAAGCTTGTGTACCTGACCTCCTAAAAGTTGCTCTTCATTGT CTGGACAACGTTAAAGATACTGATGGGTCACTTCGTGCTTTAAGAGCCAAGATTGCAAAC TTCCTGGCAAGCAATTTGAATCAGAATTGGCCTCGCGATCTGTATGACAAGGTTGCTCGC AGTTTATGA

Peptide Sequence

PEP ID	Solyc04g016240.3.1
PEP Infomation	Nucleoporin interacting component (Nup93/Nic96-like) family protein (AHRD V3.3 *** AT2G41620.1)
Sequence	MANDVDMSGWSELLHSSSKLLEQAAPSAQFPPLQRNLDQLEALTKKLKAKTLRTEAPTQS IAATRLLAREGINAEQLARDLKSFELKTTFEDVFPAEATTVEEYLQQIHEMAMVSAVQEA QKDNLKNFNDYMMKVLENDWKKEKRDFLQSLSRISTLPRTNISESSPLRGRQGQIASLTY SPQISSGPSSMEPLALTNRPIVEKKAAAYGEVVKNLTSARERGLPFKPATAFKCALESLG LNASGGKSVGIQKIWHLLSSLMGEDSAVQRNVSKKMSLVIGARRHLEWGHEKYIMETIQA HPAQAALGGAVGNLQRIRAFLRIRLRDYGVLDFDAADARRQPPVDTTWQQIYFCMRTGYF NEAREISQQSRMSHQFAPLLTEWISTGGMVSAEMAAVASEECEKMFRLGDRGGRPTYDKK KLLLYTIISGSRRQIDRFLREFPTLFSTIEDFLWFQLSAVRESPARSSAVLSEGLAPYTL DDLQAYLNKFESSHYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKDMGDEGYNVDAVHMAI VLADYGVLSEGTWVGQKFGVMDAFAEASSIIRQYGSFYLRHGDLLMSLEYYVQAAAAVGG GQLSWSGRGNIDQQRQRTSMLKQLLTELLSRDGGIDILLGPRGTGEEGQLGRFLTDEKTR QQFLLEAARQYQDAGLYDKSIEIQKRVGAFSAALDTINKCLSDAICALARGRLDGESQTS GLILSGNEILEMFKYYPEISPQERENVLAQQIVLRQLEAVLSIHKLARLGNHLDAIKEVA KLPFLPLDPRTPDFTTDIFQNLSHHVQACVPDLLKVALHCLDNVKDTDGSLRALRAKIAN FLASNLNQNWPRDLYDKVARSL*

Transcript Sequence

Transcript ID	Solyc04g016240.3.1
Transcript Infomation	Nucleoporin interacting component (Nup93/Nic96-like) family protein (AHRD V3.3 *** AT2G41620.1)
Sequence	ACACTCAAGACCATCCCATATAATGACCATTCTTGTAAATCATCCCCTATAGTACCTTGC AGTGTACCCGCTTCTAGAGAATAAATTATAGAAACTTTACCGCTCAAATTAGGGCTTTTC TTTTCTTTTCTTATTCAGCAAAGCACAAAGTCCTCAAAGTTCAGTGCAACAATGGCGAAC GACGTAGACATGAGTGGATGGAGTGAGCTTCTTCATTCTTCTTCGAAGCTTCTAGAACAG GCTGCTCCTTCAGCTCAGTTTCCTCCGCTTCAGAGGAATTTGGATCAATTGGAAGCATTA ACAAAGAAATTGAAGGCTAAAACTTTAAGAACTGAAGCTCCGACTCAATCTATTGCAGCA ACTAGGCTACTAGCTCGTGAGGGTATCAATGCAGAGCAGCTTGCTCGTGATCTCAAGTCT TTTGAGTTAAAGACGACATTTGAAGACGTTTTTCCTGCGGAGGCAACAACTGTTGAAGAG TATTTGCAACAGATCCATGAAATGGCAATGGTCTCTGCGGTTCAAGAAGCTCAGAAGGAT AACCTAAAAAATTTCAATGATTACATGATGAAAGTTTTAGAGAACGACTGGAAGAAAGAA AAGAGAGACTTCCTCCAGAGCCTAAGCCGAATTTCAACCTTACCTAGGACAAATATCAGT GAATCAAGCCCTCTACGTGGTCGTCAGGGACAAATAGCATCTTTGACATATAGCCCTCAG ATTTCATCTGGTCCTTCTAGCATGGAGCCTTTAGCATTAACTAATAGGCCCATCGTTGAG AAAAAAGCTGCTGCATATGGAGAAGTTGTCAAGAATCTCACTAGTGCAAGAGAGCGTGGT TTACCCTTTAAACCTGCTACAGCTTTTAAGTGTGCTCTTGAGAGTTTGGGTCTTAATGCA TCTGGTGGGAAGTCAGTTGGCATTCAGAAGATCTGGCATCTATTGTCGTCTCTGATGGGT GAAGATTCAGCTGTTCAACGTAATGTTTCAAAGAAAATGTCTTTAGTAATTGGAGCTAGA CGTCACCTAGAATGGGGTCATGAGAAGTACATCATGGAGACAATTCAAGCCCATCCTGCT CAGGCTGCACTTGGTGGTGCTGTTGGTAATTTGCAGAGAATCCGTGCCTTTCTCAGGATC CGTCTAAGGGACTACGGGGTTCTTGATTTTGATGCGGCTGATGCCCGTAGACAGCCTCCC GTTGATACCACCTGGCAGCAGATATACTTTTGCATGAGAACTGGCTACTTCAATGAAGCA AGAGAGATTTCCCAACAATCTCGCATGTCCCACCAGTTTGCACCTCTGCTTACAGAGTGG ATTTCCACTGGAGGCATGGTATCAGCAGAGATGGCAGCGGTTGCTTCAGAAGAGTGTGAG AAGATGTTTAGGTTGGGTGATCGAGGAGGTCGACCCACGTATGATAAGAAAAAGTTGCTA CTCTACACCATAATTTCTGGTTCTCGCAGGCAAATTGACAGATTTCTTCGAGAATTCCCT ACGCTTTTCTCTACTATAGAGGATTTCTTGTGGTTCCAATTATCTGCTGTACGTGAGTCC CCTGCCAGGTCTTCTGCTGTCCTTAGTGAGGGGTTGGCACCTTACACTTTGGATGATTTG CAAGCTTACCTAAACAAGTTTGAGTCATCACACTATACTAAGAATGGAAAGGATCCTTTG GTTTATCCGTATGTTTTACTTTTAAGCATTCAACTTCTTCCAGCCGTCCTATATTTGTCC AAGGACATGGGAGACGAGGGGTATAATGTAGATGCTGTTCATATGGCTATTGTCTTAGCG GACTATGGGGTCCTCTCTGAAGGTACATGGGTAGGTCAAAAATTTGGGGTCATGGATGCT TTTGCTGAAGCCTCTAGTATAATTAGGCAGTATGGATCATTTTACCTGCGTCATGGTGAT CTGTTAATGTCACTGGAGTACTATGTGCAAGCTGCAGCAGCAGTGGGTGGTGGGCAGTTG TCGTGGAGTGGACGTGGTAATATTGATCAGCAAAGGCAAAGGACTTCAATGTTGAAACAA CTTCTTACAGAGCTATTGTCGCGGGATGGTGGTATTGATATTTTACTTGGTCCCAGGGGT ACTGGGGAAGAAGGTCAACTTGGAAGGTTTTTGACTGATGAAAAGACAAGACAACAATTT CTGCTTGAAGCTGCTCGGCAGTATCAGGATGCGGGGCTCTATGACAAGTCCATCGAGATT CAGAAGAGAGTGGGGGCATTTTCAGCTGCATTGGATACGATAAACAAGTGCCTTTCTGAT GCAATATGTGCCTTGGCACGTGGAAGGTTGGATGGGGAAAGCCAGACTTCTGGGCTTATT CTTTCAGGAAATGAGATCCTGGAGATGTTCAAATATTACCCTGAGATCAGTCCCCAAGAG AGAGAAAATGTGTTGGCACAGCAAATTGTTCTAAGACAGCTGGAGGCTGTGCTATCCATT CATAAGCTTGCAAGACTTGGAAATCACTTGGATGCTATAAAAGAAGTAGCGAAGCTCCCA TTCCTTCCTTTGGATCCAAGGACGCCTGATTTCACAACGGATATCTTTCAAAATTTGTCT CATCATGTCCAAGCTTGTGTACCTGACCTCCTAAAAGTTGCTCTTCATTGTCTGGACAAC GTTAAAGATACTGATGGGTCACTTCGTGCTTTAAGAGCCAAGATTGCAAACTTCCTGGCA AGCAATTTGAATCAGAATTGGCCTCGCGATCTGTATGACAAGGTTGCTCGCAGTTTATGA AGTTGAAGAATCAGTGTCGGTCTCTGCTGTTGTTTATTTTAGATGTTCAACATTGTACAA AGATCATTGAACAGGCTAAGTCCGGGCATCCACGTCGTTACATCCGGTAAACAAATCCTT GAGAGGTTTTACTTGTTGATGTCCACAATGGTAATCTTGTAGACAGTAGAGATGCAAAAG TATTGCCAGTGCATTATTTTCGAGTACTTAATGTGAAGTGTCTCCGTATTATGTGTTTCA CTCGTACTACTAGATCAGAGTTGTGGCCTGTGGGGCAGATATTAACTAGCGTGTGTAAAA TCGTCCCAATCGAATCGATTTATGTCA