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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g015280.3.1
CDS Infomation

Zinc finger, RING-type (AHRD V3.3 *** A2Q5E8_MEDTR)
Sequence

ATGGGTATATTCGCCGGAGAGTCGTCGTCGTATTCAGGGAGGCTGAAGAGAGTAGCAAAA
AAGATTCTTCTTCAGACTTGTGGGTCATTTCGTTGTGGATACCAAAACCCTCCTGATGAT
GAACCTCACAACAACAACAACAACAACAACAATCCCTCTGAGTTTCCATATCCGGTGAAT
AATCTCGAGCTGTTGAATCATACTTCTGTAATTAAATCCTCACGATTAGATTCTACTACT
AACACACCTTCTAACAAGAACTTTTGTCCAATATGTCTGGATTCATTGAGCTATAGCTGC
GACAGCAGCCCAGGACAGGCTATATTCACAGCACAGTGCTCTCATGCTTTTCACTTCGCT
TGCATATCATCCAACATCCGCCATGGCAATGTTACTTGCCCTGTTTGCCGTGCACATTGG
ACCCAGCTACCTCGGACATTGAAGATGCATTATTCTCCTCACAGCAATCGCGCTGATCCC
ATTCTCCAGATTCTTGATGAATCAATTGCTACTTCTCGGGTACATAGACGTTCCTTTTTA
CGTTCTGCTCGCTATGATGATGATGATCCAGTCGAGCCTGACCGTACATCAAATATTCAC
CGTTTGCATCTATCTTTATCACCTGTTCCTCACAGTACTTCTGTGTTTGATCCGTGCTCA
AATCCAAAGTCTAGCTTTAGTTCATGCCATTATCCTCAGCATTGTTTAGAATCTTCACAA
TCAGCAGCACAGCATTTTGTAGAAACTGGGCAGTCTCCTCTGGTTTGCAGCTCCTCTAGT
AGTGCTTATCTTTGCTTAAAATTGGCACATCAGCCAGCCACTGACTTAGTCTTAGTGGCA
AGCCCCAACGGACCTCACCTGAGGCTTATGAAACAAGCCATGGCATTTGTGGTATTTTCA
TTGCGGCCTATAGACCGTTTGGCTATTGTTACCTACTCTTCTGCCGCAGCACGCATCTTC
CCTCTCAAGTGTATGACCTCTTACGGGAAGCGCACAGCACTTCAAGTTATTGACAGACTG
TTTTATATGGGCCAAGCTGATCCAGTAGAAGGACTCAAGAAAGGAGTAAAGATACTAAGA
GAACGCAGCCACCAAAATACTCATTCTTTTATTCTACATCTTTCTGACAATCCAACAAGA
TCTTTCCATGGGTTTCACTTGGAACTTCCCATTACAATCCATAAGTTTCATGTGGGATTT
GGATTTGGTACTTCAAATGGATTCGTCATGCACGAGTTTGAGAGATTTCTTGCTAAAATA
CTATGTGGTGCAGTTAGAGATATTGCATTGATGATTGGAGAGGACACAAGGATCGTGAGG
CTTGGAGAATTGCGAGGGGGTGAGGAGAGGAGAATTCCATTGCTTTTGGAAGATATGGAC
AAAGTTCGCGTGGTATATACCTACATTGATTGCATGATGGATGATTCTGTTAAAACAGGT
GAAGTTGTAGTCGGAGTTGGTGACAGGAAAGAACTGACGGATACTATTGACATTGTTGAG
AACACTGGTGGAAGAAGTAGTAGCGTTGAGGGCTGGGAATACCATGATCCATTCATGGCT
AGACGATGGGCTAAGCGTTTACATGGCTATCGGATATGA

Peptide Sequence

PEP ID

Solyc04g015280.3.1
PEP Infomation

Zinc finger, RING-type (AHRD V3.3 *** A2Q5E8_MEDTR)
Sequence

MGIFAGESSSYSGRLKRVAKKILLQTCGSFRCGYQNPPDDEPHNNNNNNNNPSEFPYPVN
NLELLNHTSVIKSSRLDSTTNTPSNKNFCPICLDSLSYSCDSSPGQAIFTAQCSHAFHFA
CISSNIRHGNVTCPVCRAHWTQLPRTLKMHYSPHSNRADPILQILDESIATSRVHRRSFL
RSARYDDDDPVEPDRTSNIHRLHLSLSPVPHSTSVFDPCSNPKSSFSSCHYPQHCLESSQ
SAAQHFVETGQSPLVCSSSSSAYLCLKLAHQPATDLVLVASPNGPHLRLMKQAMAFVVFS
LRPIDRLAIVTYSSAAARIFPLKCMTSYGKRTALQVIDRLFYMGQADPVEGLKKGVKILR
ERSHQNTHSFILHLSDNPTRSFHGFHLELPITIHKFHVGFGFGTSNGFVMHEFERFLAKI
LCGAVRDIALMIGEDTRIVRLGELRGGEERRIPLLLEDMDKVRVVYTYIDCMMDDSVKTG
EVVVGVGDRKELTDTIDIVENTGGRSSSVEGWEYHDPFMARRWAKRLHGYRI*

Transcript Sequence

Transcript ID

Solyc04g015280.3.1
Transcript Infomation

Zinc finger, RING-type (AHRD V3.3 *** A2Q5E8_MEDTR)
Sequence

AGTTGTTGTTGAGTGTCTGTGTGTGAGAGAGACAGTAAAGAGTAAAGAAGGGGACTGACT
GACCCCCCATTATTGAAAACTGGCGATACCCAACTTTTCTTTAACCCTTTATTTTGTATA
TCTTTTCCCCCCTCTCTCCATCTGTAGTGGGTATAAGCTTTTTCAGTGAGATTGAATGAA
TTCCCATTTGGGTTTTGTATAATACGTTCAGTTTATTCACTTGTACAGTGAGTTTTACGA
AAAGGGTCGTCGCCGGAAATGGGTATATTCGCCGGAGAGTCGTCGTCGTATTCAGGGAGG
CTGAAGAGAGTAGCAAAAAAGATTCTTCTTCAGACTTGTGGGTCATTTCGTTGTGGATAC
CAAAACCCTCCTGATGATGAACCTCACAACAACAACAACAACAACAACAATCCCTCTGAG
TTTCCATATCCGGTGAATAATCTCGAGCTGTTGAATCATACTTCTGTAATTAAATCCTCA
CGATTAGATTCTACTACTAACACACCTTCTAACAAGAACTTTTGTCCAATATGTCTGGAT
TCATTGAGCTATAGCTGCGACAGCAGCCCAGGACAGGCTATATTCACAGCACAGTGCTCT
CATGCTTTTCACTTCGCTTGCATATCATCCAACATCCGCCATGGCAATGTTACTTGCCCT
GTTTGCCGTGCACATTGGACCCAGCTACCTCGGACATTGAAGATGCATTATTCTCCTCAC
AGCAATCGCGCTGATCCCATTCTCCAGATTCTTGATGAATCAATTGCTACTTCTCGGGTA
CATAGACGTTCCTTTTTACGTTCTGCTCGCTATGATGATGATGATCCAGTCGAGCCTGAC
CGTACATCAAATATTCACCGTTTGCATCTATCTTTATCACCTGTTCCTCACAGTACTTCT
GTGTTTGATCCGTGCTCAAATCCAAAGTCTAGCTTTAGTTCATGCCATTATCCTCAGCAT
TGTTTAGAATCTTCACAATCAGCAGCACAGCATTTTGTAGAAACTGGGCAGTCTCCTCTG
GTTTGCAGCTCCTCTAGTAGTGCTTATCTTTGCTTAAAATTGGCACATCAGCCAGCCACT
GACTTAGTCTTAGTGGCAAGCCCCAACGGACCTCACCTGAGGCTTATGAAACAAGCCATG
GCATTTGTGGTATTTTCATTGCGGCCTATAGACCGTTTGGCTATTGTTACCTACTCTTCT
GCCGCAGCACGCATCTTCCCTCTCAAGTGTATGACCTCTTACGGGAAGCGCACAGCACTT
CAAGTTATTGACAGACTGTTTTATATGGGCCAAGCTGATCCAGTAGAAGGACTCAAGAAA
GGAGTAAAGATACTAAGAGAACGCAGCCACCAAAATACTCATTCTTTTATTCTACATCTT
TCTGACAATCCAACAAGATCTTTCCATGGGTTTCACTTGGAACTTCCCATTACAATCCAT
AAGTTTCATGTGGGATTTGGATTTGGTACTTCAAATGGATTCGTCATGCACGAGTTTGAG
AGATTTCTTGCTAAAATACTATGTGGTGCAGTTAGAGATATTGCATTGATGATTGGAGAG
GACACAAGGATCGTGAGGCTTGGAGAATTGCGAGGGGGTGAGGAGAGGAGAATTCCATTG
CTTTTGGAAGATATGGACAAAGTTCGCGTGGTATATACCTACATTGATTGCATGATGGAT
GATTCTGTTAAAACAGGTGAAGTTGTAGTCGGAGTTGGTGACAGGAAAGAACTGACGGAT
ACTATTGACATTGTTGAGAACACTGGTGGAAGAAGTAGTAGCGTTGAGGGCTGGGAATAC
CATGATCCATTCATGGCTAGACGATGGGCTAAGCGTTTACATGGCTATCGGATATGATGC
TCATGTCCTTGATCCCATGATGCTGGCTGATCTATTAATTGAACAAACATTTTTTAGATT
CTGCATTATAGGTGTGTGATCTTGTGAAATACATGAAGATAGTTTCTTGTATATCTGTGT
TCCCAATTTTTGTATTAAAGAATCTAATATGATTGATTGAACTGTTATGAAGTGCTTATA
ATATTTTACAACATTGTAGG