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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g010230.3.1
CDS Infomation

Pectate lyase (AHRD V3.3 *** K4BPH7_SOLLC)
Sequence

ATGGCGGCGTTGCCATATGCTGATGTCGATTCGAGCTTAAAAGCTCTAGCCGGTCGAGCC
GAAGGATTTGGCAGATTTGCAATCGGCGGTCTAAATGGTCCGGTCTATTCCGTCACAACA
TTGGCCGATGATGGTCCGGGATCACTCCGTGATGGATGCCGTAAGAAAGAACCACTATGG
ATTGTTTTTGAAGTTTCAGGCACCATTCCTCTCACGTCTTACCTACGTGTGTCATCCCAT
AAAACTATTGATGGTCGTGGACAAAGGATAATACTCACTGGCAAAGGCTTACAGCTGAAG
GATTGTGAGCACATAATCGTATGCAATTTGGAGTTTGAAGGTGGCAGAGGTCATGATGTT
GACGGCATTCAGATAAAACCAAATTCCAGGCACATTTGGATAGACCGCTGTTCTCTTCGT
GATTATGATGATGGGCTAATCGATATTACCAGACAAAGCACAGATATAACTATTTCTAGG
TACTGGATGGTTGTTTCTCAGATTCTATGTTATTTTGCTCAGCATGATAAGACAATGCTT
ATTGGAGCAGACCCGTCTCATGTTGGTGATAGATGTATCAGAGTGACCATCCACCATTGC
TTTTTCGATGGGACGAGGCAGAGGCAACCTCGTGTTAGATTTGGTAAAGTTCATCTGTAC
AACAATTACACTAGAAATTGGGGTATATATGCTATTTGTGCTAGTGTAGAATCACAGATA
TATTCTCAATGCAACATATATGAAGCTTCACAGAAGAAAAAAGCTTTCGAATACTACACA
GAGAAGGCAGCAGATAAGGAGGAAGCAAGAAGTGGTTTAATCAGATCAGAAGGGGACATG
TTTCTGAATGGAGCTCAAGGGAGTTTGTTAACTGGTATTGGTGGAGAGTGTGTTTTTCAT
CCAAGTGAATTTTACCCTGTCTGGACACTGGAACCAGCCTCAGACTCTCTCAAAGGTATT
CTCCACATTTGCACTGGTTGGCAATCTGTTTCCCTTCCACAGGAGGAGTGTGCTCGTCAA
CTGAAACCCGCACGCTAG

Peptide Sequence

PEP ID

Solyc04g010230.3.1
PEP Infomation

Pectate lyase (AHRD V3.3 *** K4BPH7_SOLLC)
Sequence

MAALPYADVDSSLKALAGRAEGFGRFAIGGLNGPVYSVTTLADDGPGSLRDGCRKKEPLW
IVFEVSGTIPLTSYLRVSSHKTIDGRGQRIILTGKGLQLKDCEHIIVCNLEFEGGRGHDV
DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITISRYWMVVSQILCYFAQHDKTML
IGADPSHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAICASVESQI
YSQCNIYEASQKKKAFEYYTEKAADKEEARSGLIRSEGDMFLNGAQGSLLTGIGGECVFH
PSEFYPVWTLEPASDSLKGILHICTGWQSVSLPQEECARQLKPAR*

Transcript Sequence

Transcript ID

Solyc04g010230.3.1
Transcript Infomation

Pectate lyase (AHRD V3.3 *** K4BPH7_SOLLC)
Sequence

TTATATTTTCTTGATGCAAATTTACCTTAAAGTTTGTTATTTTTTTTAAAAAAAAGATTT
CCAATATAAAAGCTTTAACTAAACTCCAATATAAATATAGTTGAATTGATTCTTCCGGTT
CAATTTCACCGGCCGGCGGCTAAAGTTTACCGGTTCAGCCCCCTTAACCCTAGAAGCTCA
GTAAATTGCTGATCATGGCGGCGTTGCCATATGCTGATGTCGATTCGAGCTTAAAAGCTC
TAGCCGGTCGAGCCGAAGGATTTGGCAGATTTGCAATCGGCGGTCTAAATGGTCCGGTCT
ATTCCGTCACAACATTGGCCGATGATGGTCCGGGATCACTCCGTGATGGATGCCGTAAGA
AAGAACCACTATGGATTGTTTTTGAAGTTTCAGGCACCATTCCTCTCACGTCTTACCTAC
GTGTGTCATCCCATAAAACTATTGATGGTCGTGGACAAAGGATAATACTCACTGGCAAAG
GCTTACAGCTGAAGGATTGTGAGCACATAATCGTATGCAATTTGGAGTTTGAAGGTGGCA
GAGGTCATGATGTTGACGGCATTCAGATAAAACCAAATTCCAGGCACATTTGGATAGACC
GCTGTTCTCTTCGTGATTATGATGATGGGCTAATCGATATTACCAGACAAAGCACAGATA
TAACTATTTCTAGGTACTGGATGGTTGTTTCTCAGATTCTATGTTATTTTGCTCAGCATG
ATAAGACAATGCTTATTGGAGCAGACCCGTCTCATGTTGGTGATAGATGTATCAGAGTGA
CCATCCACCATTGCTTTTTCGATGGGACGAGGCAGAGGCAACCTCGTGTTAGATTTGGTA
AAGTTCATCTGTACAACAATTACACTAGAAATTGGGGTATATATGCTATTTGTGCTAGTG
TAGAATCACAGATATATTCTCAATGCAACATATATGAAGCTTCACAGAAGAAAAAAGCTT
TCGAATACTACACAGAGAAGGCAGCAGATAAGGAGGAAGCAAGAAGTGGTTTAATCAGAT
CAGAAGGGGACATGTTTCTGAATGGAGCTCAAGGGAGTTTGTTAACTGGTATTGGTGGAG
AGTGTGTTTTTCATCCAAGTGAATTTTACCCTGTCTGGACACTGGAACCAGCCTCAGACT
CTCTCAAAGGTATTCTCCACATTTGCACTGGTTGGCAATCTGTTTCCCTTCCACAGGAGG
AGTGTGCTCGTCAACTGAAACCCGCACGCTAGTTTCCTCCCGAGACAGATCTAGTGCTCG