Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g010070.3.1
CDS Infomation

calcium-binding EF-hand family protein
Sequence

ATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCT
GAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAA
TGGCTTTCGCTTCCTGATACTGCCGCTTTGGTGAAATCTTTGATTAAGAATGCCAAAGGT
GGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCT
TTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGT
TCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTA
ATTAATGAGCCTGCAAAAGAACTGATACCACAGTTTTACTTTCAAAATGGTCGCCCCCCT
CCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACT
GATGGGCTACAAATGAATGAGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCG
TTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAGG
GATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATATAGCAACTCAA
ATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAGGATGACTTCAAACCC
ATTCTTCGGGAACTTTTGGCAACACATCCAGGGTTGGAGTTCTTACAGAGCACACCTGAA
TTTCAAGAGCGTTATGCTGAAACTGTAGTATACAGAATATTTTATTACGTAAATCGATCG
GGTAATGGCCGTCTTACCCTCAAGGAGCTGAGACGTTCTGACCTTATTGCTGCAATGCAA
CATGCGGATGAAGAAGATGACATTAACAAGGTCCTAAGGTACTTCTCGTATGAACATTTT
TACGTGATATATTGCAAGTTTTGGGAGCTTGACACCGATCATGATTTTCTCATTGATAAA
GAGAACCTCATTCGATATGGCAACCACGCCCTTACGTACAGGATTGTTGATAGAATATTT
TCTCAGGTTCCTAGGAAGTTCACCAGTAAAGTTGAAGGGAAGATGGGCTACGAAGATTTT
GTTTACTTTATATTGTCAGAGGAGGATAAATCATCAGAGCCTAGTCTTGAATACTGGTTC
AAATGCATAGATATGGATGGAAATGGGGTTATAACTAGGAATGAGATGCAATTCTTTTAT
GAGGAGCAGTTGCATAGAATGGAATGCATGGCCCAAGAGCCAGTGCTTTTTGAGGATATT
TTGTGTCAAATAGTTGACATGGTCAGTCCAGAGAATGAAAGCTATTTTACATTACGTGAT
TTGAAGGGAAGCAGGCTCTCCGGTAGTGTTTTTAACATACTTTTTAACCTCAATAAGTTC
ATGGCTTTTGAAACCCGCGACCCCTTCCTAATTCGTCAGGAGCGTGAGAACCCAAATCTG
ACTGAATGGGATCGCTTCGCTCACAGAGAATATATTAGGCTCTCAATGGAGGAAGATGCA
GAGGATGCCTCCAATGGAAGTGCAGATGTCTGGGATGAATCACTTGAGGCTCCCTTCTGA

Peptide Sequence

PEP ID

Solyc04g010070.3.1
PEP Infomation

calcium-binding EF-hand family protein
Sequence

MDVDFNGDVASLDAELLQLPELSPLAIKTNPFVAEKLFDQWLSLPDTAALVKSLIKNAKG
GGPLNVSTTSSGTNVVATNSLPSMFPAGSTPPLSPRSSSGSPRISKHRAGPSSLGSPLKL
INEPAKELIPQFYFQNGRPPPNELKERCLFRINQFFYGHTDGLQMNEFKPITKEICKLPS
FFSAVLFKKIDVDGTGVITRDAFVDYWIHGNMLTKDIATQMYTILKQPDLRYLVQDDFKP
ILRELLATHPGLEFLQSTPEFQERYAETVVYRIFYYVNRSGNGRLTLKELRRSDLIAAMQ
HADEEDDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIF
SQVPRKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDMDGNGVITRNEMQFFY
EEQLHRMECMAQEPVLFEDILCQIVDMVSPENESYFTLRDLKGSRLSGSVFNILFNLNKF
MAFETRDPFLIRQERENPNLTEWDRFAHREYIRLSMEEDAEDASNGSADVWDESLEAPF*

Transcript Sequence

Transcript ID

Solyc04g010070.3.1
Transcript Infomation

calcium-binding EF-hand family protein
Sequence

CTCCTTTTTTTTCCCTTCACACAAACAAAACACAATACTTTGCTTCCAGGGTTTCGTTTT
TCTCCTCTGTAAATTCTCTCCTCTCCGATCTCCGTCAATTTTCAATTTCGTGAACTTCCG
ATTCGCAAAGATCCGGTTACGTTTTTTTGGTTTTTTTTGGTTGTTTGGTGGCGGAACCCT
AATTTTATCGGGATTTGGAAGATTTCATGCGATGCGAAGAGGAATTGAGGTTCGTTTAGG
TGTTTGAAGATCTTGCGGTTTTGGTTTGGTTCGATTTGATTTGATTTTTGAAAAAAAAAG
AAAAAAGAAAAGAGGTATCGCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGA
GTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATC
CTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTGG
TGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGT
CTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACAC
CTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGAC
CCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCAC
AGTTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTA
GGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATGAGTTTAAACCAA
TTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCG
ATGTTGACGGCACTGGCGTCATAACCAGGGATGCCTTTGTTGATTATTGGATACACGGGA
ACATGTTGACAAAAGATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTA
GATACCTCGTGCAGGATGACTTCAAACCCATTCTTCGGGAACTTTTGGCAACACATCCAG
GGTTGGAGTTCTTACAGAGCACACCTGAATTTCAAGAGCGTTATGCTGAAACTGTAGTAT
ACAGAATATTTTATTACGTAAATCGATCGGGTAATGGCCGTCTTACCCTCAAGGAGCTGA
GACGTTCTGACCTTATTGCTGCAATGCAACATGCGGATGAAGAAGATGACATTAACAAGG
TCCTAAGGTACTTCTCGTATGAACATTTTTACGTGATATATTGCAAGTTTTGGGAGCTTG
ACACCGATCATGATTTTCTCATTGATAAAGAGAACCTCATTCGATATGGCAACCACGCCC
TTACGTACAGGATTGTTGATAGAATATTTTCTCAGGTTCCTAGGAAGTTCACCAGTAAAG
TTGAAGGGAAGATGGGCTACGAAGATTTTGTTTACTTTATATTGTCAGAGGAGGATAAAT
CATCAGAGCCTAGTCTTGAATACTGGTTCAAATGCATAGATATGGATGGAAATGGGGTTA
TAACTAGGAATGAGATGCAATTCTTTTATGAGGAGCAGTTGCATAGAATGGAATGCATGG
CCCAAGAGCCAGTGCTTTTTGAGGATATTTTGTGTCAAATAGTTGACATGGTCAGTCCAG
AGAATGAAAGCTATTTTACATTACGTGATTTGAAGGGAAGCAGGCTCTCCGGTAGTGTTT
TTAACATACTTTTTAACCTCAATAAGTTCATGGCTTTTGAAACCCGCGACCCCTTCCTAA
TTCGTCAGGAGCGTGAGAACCCAAATCTGACTGAATGGGATCGCTTCGCTCACAGAGAAT
ATATTAGGCTCTCAATGGAGGAAGATGCAGAGGATGCCTCCAATGGAAGTGCAGATGTCT
GGGATGAATCACTTGAGGCTCCCTTCTGAGTTCTAGTCTGTGAGATAGAATGGTATGGAG
AATGCAGTTACTTAGAATAACCTAAGGCTGCATCTACATACATCGATAGTTCTGCCACCC
ATTATTTTTTCTCATGCCATGTCTCCATCTCTGATCATGCTGTAAAACACTTTGTTCACC
GTTGATGCATATTTATTTATGTGGAAGAAAGTCTTATAGTAGCTACTGAGAGTTTGTTGA
CATTACATAACCGTAGCTGTAAGATGCACGTTTATGGAGTTGCATATACTGTTAAAGCAT
GCTGTTATAGTAGAAATAGATGCTTTTGCTAAATTACAGGAATATAGGAGAAAAATAAAT
ACTCATGACTGAGCATCAGTATCAAATGCTCTCAAATTACTGAAAATTCATGAAGCAGAA
TGGTTTGTCATTCGTCACCCAAGGTAATGTGAATTCACTTATAAAAGAGAGATTTTAGGT
GGCTCAGGATAGTATCCACATTTTCTTGATTTTTCAGTCGACACAAGGTACATCTATTGT
GTTCATGCCACATTCAGGATGCAGTTAGTTTATGTGGCATGTAGAAATTTTTATGACCTG
GCCTCTTCCTGCTTGTAGATATATTACCGCTTCTTATTTGATATGTGAGTTAATGTTGGA
AATGGCCTCGCACGATTTAATATTGTTTTCTCCATTTGTCAAGCAGCCTGACCTTATGCT
GTTCTTTCTTCAGCCAGGTGTGCCTATTAGCAAATCTTGTTTCAAGCTGGCTATTGAGTT
GCAAAGAGTTAGTTTGCACGGAACAGTCAAGTGGGACAAGCTTATCCGTGTGTGTCACCA
AGATGTTATTATGAGATAGCCGAGGAGGAAATGTTTGTTTGAACTGCATAGAGTATGCTC
TCATGAAGTATAAGGGCATGCTAGTGTTGGAAGCTCCTGACTTGAAACATCAAGGGCTTT
GCAAGTGCGCCGATTGGTGATAGATGATTAATGAAAAACTAGATTCCAGTAGTTCATAAC
TTCGCTCCACGCTTGTTCCCTCTTTAGCTGTACCAAGTCCATATTTCTTATTTATTTGTT
CTAGTGCCGATTTTTGGTGGTTGCAAATACAGTTTTTCTTGAAGAGGTTTAGTATGGCTA
GTCCCACAGCCCATGTGGATCAGCTTTTTGCTCCTTCTATTATTCTTTTGTGGATTAGAC
TCTTCTTTTAGTGGCATGTGAATCATGGTAGTTCTGTATTGACTGTGTAATGATATATGG
C