Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g009940.3.1
CDS Infomation

Chloroplast J-like domain 1 (AHRD V3.3 *** AT1G08640.1)
Sequence

ATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCT
CGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTC
AGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCT
GCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTTCTG
GGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAA
GATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGTTGGAGAAGGCTTATGACAAA
ATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTA
TCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTTCACC
AAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTATAGCTTGG
GTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTA
TATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTACAGAGGAA
GGCGAAGATGAAGGACGGATGATGAGGATGGGAAAAAGGCTGCTTCGTTCTCTTGCATTA
GTTTTTGGTTGCATAGCTATTGCATCCTTGGGATATACTGGTCTCCTCAATCTTATCGAG
TATGCTGGTGGTTTCATACCTGTCTTTCTGTACAATAATCAGGAATTGCTTGTAACTGGA
TTCACAGCCATCGTGCTTTCCATCATCGCATCTTATTACAGATAG

Peptide Sequence

PEP ID

Solyc04g009940.3.1
PEP Infomation

Chloroplast J-like domain 1 (AHRD V3.3 *** AT1G08640.1)
Sequence

MVFTISSNPVQFTHTTSLNARPNCYLKASVPVSNLSFSFFRHEYIRFSVKSRLNKRMVCA
AASAAGSSSSSDDSNPYEVLGVNPIEGFDMVKAAYARRRKDAERRGDEATLAQLEKAYDK
IMMSQLTKRKQGVTFGSFKVSKEVRYADKQPILPWGPRFTKSDDKDIKINLAISAVFIAW
VFINRNAEWKPLQFLAFAFVYRIFEKLKAFEPPTPTFTEEGEDEGRMMRMGKRLLRSLAL
VFGCIAIASLGYTGLLNLIEYAGGFIPVFLYNNQELLVTGFTAIVLSIIASYYR*

Transcript Sequence

Transcript ID

Solyc04g009940.3.1
Transcript Infomation

Chloroplast J-like domain 1 (AHRD V3.3 *** AT1G08640.1)
Sequence

TAAGGCTTTTGAGGAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAA
AATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGC
TCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTT
CAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGC
TGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTTCT
GGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAA
AGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGTTGGAGAAGGCTTATGACAA
AATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGT
ATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTTCAC
CAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTATAGCTTG
GGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGT
ATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTACAGAGGA
AGGCGAAGATGAAGGACGGATGATGAGGATGGGAAAAAGGCTGCTTCGTTCTCTTGCATT
AGTTTTTGGTTGCATAGCTATTGCATCCTTGGGATATACTGGTCTCCTCAATCTTATCGA
GTATGCTGGTGGTTTCATACCTGTCTTTCTGTACAATAATCAGGAATTGCTTGTAACTGG
ATTCACAGCCATCGTGCTTTCCATCATCGCATCTTATTACAGATAGTCTACCTTCTACAC
TTGTTGAAGAAGAGATGCAGTTGCCTTGTGTTAGCTGTCAAATTTTGTAATTCTATTTGT
TCCAGAAATTTGCCTTGTTTTGTCTATAGGATTTGATTGAGCAGCACTTGTAAGGATGCA
CCAAGTTCTGAGGATTCTAGGATTAAACAAGACCACAATCTTTTCAAAATTGATGGATGT
TAATGTGGAGATATAAATGATAATGAGGAGGAAAG