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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g009860.3.1
CDS Infomation

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AHRD V3.3 *** AT1G06620.1)
Sequence

ATGGTAGACAATAATCGAGCAAAAGAACTCAAGGCTTTCGATGACACAAAGGCCGGTGTA
AAAGGACTAGTCGATTCAGGGATAGTTCATATTCCCGAGATCTTCATTACACCATCCTTA
ACAGAAAAAGAGTTCAGTGTTGAAAATCTCGATTCAGGCTCAGACATAGTCAGCGTTCAG
ATCCCAGTTATAGATTTAAAGGATATGAATGGAGACGATTTTCAACGTAGGAGAGTTGTT
GAAGAGGTAGGTGAGGCATGTAAGAGTTGGGGATTTTTTCAAGTTGTGAATCATGGTGTG
CCACAACATGTTATGGATGAGATGATTGGTGGAATTAGATGTTTTCATGAGCAACCAAAT
GATATAAAGGAGGAGTTTTACTCAATGGATCCTATGAAGAAGGTGATGTTTAATAGTAAT
TTTGATCTTTATCAAGCTAAGGTTGCAAATTGGAGGGATACATTAGCTTGTCTCATGGCT
CCTAATCCTCCTACTAATGATGAATTACCACAAGTATGTAGGGAGGAATTACTTCAATAT
TCTCAACATGTTAGAAAGTTGGGCCTTACAATATTTGAGTTACTAGCAGAAGAACTTGGG
CTTAGGCCCAATCACTTATTGGACATGGACTGTGCAAAAGGCCAATTCATAATTAGTCAT
TATTATCCACCTTGTCCTGAGCCCAATAAGACTCTTGGAATCACTAAACATACTGATCCA
GATTTCTTCACAATTCTTCTACAAGATCAAATTGGTGGGCTTCAAATTAATCACCAAAAT
CAATGGATTGATATTCATCCTGTGAATGGTGCTCTACTTCTATCAAATGACAAGTTCAAA
AGTGCAGAGCATAGAGTATTGGCACAACATATTGGGCCAAGGATTTCAATTGCATGTTTC
TTCACAACTCAACTTTTGCCATTTGATACACTTTATGGCCCAATAAAGGAATTGTTGTCT
GATGAAAATCATGCTTTATACAAAGAAACAACAGTAAAAGATTATGTGTTATATTACAAC
TCCAAAGGACTTGATCTACAAAATAATCAAAAACTTTTAACATATTTTATAACTCTCTTC
TTACCAAAAATAAAATAA

Peptide Sequence

PEP ID

Solyc04g009860.3.1
PEP Infomation

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AHRD V3.3 *** AT1G06620.1)
Sequence

MVDNNRAKELKAFDDTKAGVKGLVDSGIVHIPEIFITPSLTEKEFSVENLDSGSDIVSVQ
IPVIDLKDMNGDDFQRRRVVEEVGEACKSWGFFQVVNHGVPQHVMDEMIGGIRCFHEQPN
DIKEEFYSMDPMKKVMFNSNFDLYQAKVANWRDTLACLMAPNPPTNDELPQVCREELLQY
SQHVRKLGLTIFELLAEELGLRPNHLLDMDCAKGQFIISHYYPPCPEPNKTLGITKHTDP
DFFTILLQDQIGGLQINHQNQWIDIHPVNGALLLSNDKFKSAEHRVLAQHIGPRISIACF
FTTQLLPFDTLYGPIKELLSDENHALYKETTVKDYVLYYNSKGLDLQNNQKLLTYFITLF
LPKIK*

Transcript Sequence

Transcript ID

Solyc04g009860.3.1
Transcript Infomation

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AHRD V3.3 *** AT1G06620.1)
Sequence

TTAAAAGCTTAGTACATTCACTAACATTTTGGAAGAAAAAATAATGGTAGACAATAATCG
AGCAAAAGAACTCAAGGCTTTCGATGACACAAAGGCCGGTGTAAAAGGACTAGTCGATTC
AGGGATAGTTCATATTCCCGAGATCTTCATTACACCATCCTTAACAGAAAAAGAGTTCAG
TGTTGAAAATCTCGATTCAGGCTCAGACATAGTCAGCGTTCAGATCCCAGTTATAGATTT
AAAGGATATGAATGGAGACGATTTTCAACGTAGGAGAGTTGTTGAAGAGGTAGGTGAGGC
ATGTAAGAGTTGGGGATTTTTTCAAGTTGTGAATCATGGTGTGCCACAACATGTTATGGA
TGAGATGATTGGTGGAATTAGATGTTTTCATGAGCAACCAAATGATATAAAGGAGGAGTT
TTACTCAATGGATCCTATGAAGAAGGTGATGTTTAATAGTAATTTTGATCTTTATCAAGC
TAAGGTTGCAAATTGGAGGGATACATTAGCTTGTCTCATGGCTCCTAATCCTCCTACTAA
TGATGAATTACCACAAGTATGTAGGGAGGAATTACTTCAATATTCTCAACATGTTAGAAA
GTTGGGCCTTACAATATTTGAGTTACTAGCAGAAGAACTTGGGCTTAGGCCCAATCACTT
ATTGGACATGGACTGTGCAAAAGGCCAATTCATAATTAGTCATTATTATCCACCTTGTCC
TGAGCCCAATAAGACTCTTGGAATCACTAAACATACTGATCCAGATTTCTTCACAATTCT
TCTACAAGATCAAATTGGTGGGCTTCAAATTAATCACCAAAATCAATGGATTGATATTCA
TCCTGTGAATGGTGCTCTACTTCTATCAAATGACAAGTTCAAAAGTGCAGAGCATAGAGT
ATTGGCACAACATATTGGGCCAAGGATTTCAATTGCATGTTTCTTCACAACTCAACTTTT
GCCATTTGATACACTTTATGGCCCAATAAAGGAATTGTTGTCTGATGAAAATCATGCTTT
ATACAAAGAAACAACAGTAAAAGATTATGTGTTATATTACAACTCCAAAGGACTTGATCT
ACAAAATAATCAAAAACTTTTAACATATTTTATAACTCTCTTCTTACCAAAAATAAAATA
A