Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g008880.3.1
CDS Infomation

UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (AHRD V3.3 *** A0A199UNF2_ANACO)
Sequence

ATGAGTCCACTGACCATTCAACTTCAGCCTTCTCCATTCCCACTTACAAATCCAGCAAAA
CCCCAAATCACCATTTTCACTTTACCCAACAGATCAATAATCTTGATTCCTCAAGCTACA
TTTTCTTCTCCATCAAATTCTCCTCTTTGGACCATTTCAGAGATAGCCAGGGCTGTCAAT
GGCAGAATCATCAGATGGGGTCCACCTGGAACAATCTGTACGGACACCAGAACCCTTGAA
CCAGGACAATGGTTTCTCCCCCTTGTTGGACAAAACTTTGATGCCCATAATTTCATTACT
CCTAAATTAGCCACAAAAGGGTGTGTTGGAGTGATTGGGAACTGGGTTTGTGAGGGTTGG
AACAATGGGTTTGTACAGGTAGAAGGTGACACTATGAGTTCTTTAAAAAGATTAGGTTTT
TATGCAAGAAACAGGTTTACTGGTTGTTTAATTGGTTTAACAGGAAGTGTGGGGAAAACA
ACTACAAAGACTATGGTGGCGTTAGCTTTGGAGAGTGTTGGAACTGTTTATTATAGTCCA
GGGAACTGGAATAACGAGATTGGGGTTGCGTTATTGCTTATTGGGATGTCGAGGGATGTG
GGGTTTGGTGTTTTGGAGATGGGAATGAGCAAGAAAGGAGAGATCTTGGAGCTGTCCAGG
ATGTGTAGACCAGATGTAAGGGTGATTTTGAATGTGAATGCTGCACATTTGGAGAACTTC
GCGAACTTGGAGGAGGTTTCCATGGCGAAAGGAGAGATTTTAAGAGAAGCAATGCCAGGG
AATGTGTGTGTATTGAATGGTGATGATCCCCTTGTCATGAGCCTCCCAGTTCCAGTTGGA
GTTAAGAAGGTGGTTTTTGGTCGACAGTTTGGCTGTGATGTTCGTTTAGTTTCTTCACAA
ATCATAGACGGAGGTCGCAGAGTAGAAATTGTTCTAGAGGGGTTCAACGAGATATCAGAG
CTTGAAGTGACCAAGAATGGGATTACAATAATCAATGATGTTTACAATGCAAGTCCAGCT
AGTACTCAAGCTGCAATTGACTTGTTAAGAAACATTGACTGCAAAGGTAAACGAGTTGCT
ATACTCGGAGACATGCTTGAACTTGGTTCAACAGAATTCAAGTTTCATGAGTTGATGCTA
CAGAGTTGCTGCGATGCTCAGTTTGATGTGGTTGCACTTGTTGGAATAAGGTTTGTACGT
GCAGCTGACAGTATAGACTTTGGGCCAGATACAAAACTGGTCTACACTACTGATGCTCAC
CAAATGGCTTCTAAAATCATCGATTATCTAAATAGTGGTGATGTCGTCCTAGTCAAAGGC
AGTCGTCAAATAAGAATGGAGAAGATTCCACAATGTGATCGTGCTAGAAGAAAAAACAGT
AAACTGGTTCAACTTTGTTCGAGTCCTTTTTCAAGACCTCCGCATAGCTCAGGGCCAGCA
GCTGGCGCTGCGGGTAGAAGCCCTTGCAAAGATGCTTTCTTCAAGTCGAGATGGATGAAG
TGCCTCTTAACGGATACTTTCTGCAACGTTACCACCAAAGGGTTCAATAAAACCATATTC
TTACTCGAGGAACGACACTCCAGAAATCAGTTTGTTGTTCAAGAAGTCACTTATGGTAAT
GAGGCTTCACTCACTTCCTTAAGAGACTTGGCTAGTGATAGGTTCAATATCAACTCTCAG
CTTGAGCACTTGCAAGCTAAATACGTTGGAACAGGACATGCCGACTTGACTCGATTTGAG
TGGGCAGTGAACATTCAGCGTGACAGTTACGCATCTTATGTCGGACACTACCCAATGTTG
GCATATTTTGCCATTGCAGAAAATGAATCAATCGGAAGAGAGCGCTACAATTTTATGCAG
AAAATGCTTTTGCCTTGTGGTCTTCCACCTGATAGGGAGGACGACTAA

Peptide Sequence

PEP ID

Solyc04g008880.3.1
PEP Infomation

UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (AHRD V3.3 *** A0A199UNF2_ANACO)
Sequence

MSPLTIQLQPSPFPLTNPAKPQITIFTLPNRSIILIPQATFSSPSNSPLWTISEIARAVN
GRIIRWGPPGTICTDTRTLEPGQWFLPLVGQNFDAHNFITPKLATKGCVGVIGNWVCEGW
NNGFVQVEGDTMSSLKRLGFYARNRFTGCLIGLTGSVGKTTTKTMVALALESVGTVYYSP
GNWNNEIGVALLLIGMSRDVGFGVLEMGMSKKGEILELSRMCRPDVRVILNVNAAHLENF
ANLEEVSMAKGEILREAMPGNVCVLNGDDPLVMSLPVPVGVKKVVFGRQFGCDVRLVSSQ
IIDGGRRVEIVLEGFNEISELEVTKNGITIINDVYNASPASTQAAIDLLRNIDCKGKRVA
ILGDMLELGSTEFKFHELMLQSCCDAQFDVVALVGIRFVRAADSIDFGPDTKLVYTTDAH
QMASKIIDYLNSGDVVLVKGSRQIRMEKIPQCDRARRKNSKLVQLCSSPFSRPPHSSGPA
AGAAGRSPCKDAFFKSRWMKCLLTDTFCNVTTKGFNKTIFLLEERHSRNQFVVQEVTYGN
EASLTSLRDLASDRFNINSQLEHLQAKYVGTGHADLTRFEWAVNIQRDSYASYVGHYPML
AYFAIAENESIGRERYNFMQKMLLPCGLPPDREDD*

Transcript Sequence

Transcript ID

Solyc04g008880.3.1
Transcript Infomation

UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (AHRD V3.3 *** A0A199UNF2_ANACO)
Sequence

ATGCGTATCCAAATGGGATGTTAAAAGATAAATTTATGTATTATACGGATGAAAGAAACT
ATTTTTTGTTGAGAAAAACAGAGTTTTTTCTGCTGCCTTGTTTCCATTGCTCCAATGAGT
CCACTGACCATTCAACTTCAGCCTTCTCCATTCCCACTTACAAATCCAGCAAAACCCCAA
ATCACCATTTTCACTTTACCCAACAGATCAATAATCTTGATTCCTCAAGCTACATTTTCT
TCTCCATCAAATTCTCCTCTTTGGACCATTTCAGAGATAGCCAGGGCTGTCAATGGCAGA
ATCATCAGATGGGGTCCACCTGGAACAATCTGTACGGACACCAGAACCCTTGAACCAGGA
CAATGGTTTCTCCCCCTTGTTGGACAAAACTTTGATGCCCATAATTTCATTACTCCTAAA
TTAGCCACAAAAGGGTGTGTTGGAGTGATTGGGAACTGGGTTTGTGAGGGTTGGAACAAT
GGGTTTGTACAGGTAGAAGGTGACACTATGAGTTCTTTAAAAAGATTAGGTTTTTATGCA
AGAAACAGGTTTACTGGTTGTTTAATTGGTTTAACAGGAAGTGTGGGGAAAACAACTACA
AAGACTATGGTGGCGTTAGCTTTGGAGAGTGTTGGAACTGTTTATTATAGTCCAGGGAAC
TGGAATAACGAGATTGGGGTTGCGTTATTGCTTATTGGGATGTCGAGGGATGTGGGGTTT
GGTGTTTTGGAGATGGGAATGAGCAAGAAAGGAGAGATCTTGGAGCTGTCCAGGATGTGT
AGACCAGATGTAAGGGTGATTTTGAATGTGAATGCTGCACATTTGGAGAACTTCGCGAAC
TTGGAGGAGGTTTCCATGGCGAAAGGAGAGATTTTAAGAGAAGCAATGCCAGGGAATGTG
TGTGTATTGAATGGTGATGATCCCCTTGTCATGAGCCTCCCAGTTCCAGTTGGAGTTAAG
AAGGTGGTTTTTGGTCGACAGTTTGGCTGTGATGTTCGTTTAGTTTCTTCACAAATCATA
GACGGAGGTCGCAGAGTAGAAATTGTTCTAGAGGGGTTCAACGAGATATCAGAGCTTGAA
GTGACCAAGAATGGGATTACAATAATCAATGATGTTTACAATGCAAGTCCAGCTAGTACT
CAAGCTGCAATTGACTTGTTAAGAAACATTGACTGCAAAGGTAAACGAGTTGCTATACTC
GGAGACATGCTTGAACTTGGTTCAACAGAATTCAAGTTTCATGAGTTGATGCTACAGAGT
TGCTGCGATGCTCAGTTTGATGTGGTTGCACTTGTTGGAATAAGGTTTGTACGTGCAGCT
GACAGTATAGACTTTGGGCCAGATACAAAACTGGTCTACACTACTGATGCTCACCAAATG
GCTTCTAAAATCATCGATTATCTAAATAGTGGTGATGTCGTCCTAGTCAAAGGCAGTCGT
CAAATAAGAATGGAGAAGATTCCACAATGTGATCGTGCTAGAAGAAAAAACAGTAAACTG
GTTCAACTTTGTTCGAGTCCTTTTTCAAGACCTCCGCATAGCTCAGGGCCAGCAGCTGGC
GCTGCGGGTAGAAGCCCTTGCAAAGATGCTTTCTTCAAGTCGAGATGGATGAAGTGCCTC
TTAACGGATACTTTCTGCAACGTTACCACCAAAGGGTTCAATAAAACCATATTCTTACTC
GAGGAACGACACTCCAGAAATCAGTTTGTTGTTCAAGAAGTCACTTATGGTAATGAGGCT
TCACTCACTTCCTTAAGAGACTTGGCTAGTGATAGGTTCAATATCAACTCTCAGCTTGAG
CACTTGCAAGCTAAATACGTTGGAACAGGACATGCCGACTTGACTCGATTTGAGTGGGCA
GTGAACATTCAGCGTGACAGTTACGCATCTTATGTCGGACACTACCCAATGTTGGCATAT
TTTGCCATTGCAGAAAATGAATCAATCGGAAGAGAGCGCTACAATTTTATGCAGAAAATG
CTTTTGCCTTGTGGTCTTCCACCTGATAGGGAGGACGACTAA