Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g008820.3.1
CDS Infomation

High mobility group protein (AHRD V3.3 *-* O49948_SOLTU)
Sequence

ACCAAAGATTTTTTTTCTCTCTCTCTGTTTTCGATTTCTAGAGCTTTTTCTGTGTTAAGG
GTTGTTATCAAGATTTGGAAAAAAATGGCTGGTGGTGGAGCATCGACTAAGGCTTCAAAT
GGTGGTCCTACTAGGGTGAGGAAGAGGGTTGAAGTTGAATCTGCTGCTTCTGCTGCTAGT
CTTAAGCGTGCTAAGGATGGAAGTGCTTTTGCTCGTTGTGAAGAATGCAGCAAGGATGTG
CCTATAGCATTGATTAGCTTCCACAATTGCAGTCTTGATGCAAAAATCAAGATGAATTTG
GAGGCTCAAGTTGTGGAAAATCAGACTGAAGTGAAGAAACCAGCAGCAAAGAGCAAGGAG
AAATCAACAGAGCCAAAGGCTAAGAGGGAAAAGAAACCCAAGAATCCTAATGCTCCGAAA
CGCCCTCCTAGTGCTTTCTTCGTGTTCATGAATGATTTTCGACAGGAATTTAAGGCTGCA
AATCCTGATTGCAAGAGTGTCTCCATGGTTGCTAAGGAGGGTGGTGAGAAATGGAAGTCC
ATGACTGATGAGGAGAAAAAACCATATCAGGAAAAGGCTGCAGAGCTCAAAGCAGCATAT
GAGAAATCCTTTAAGTCTAACACTGATGCTGATAATTCCAATGATGACGATGAGGAGCCT
GAGAAGGAAGTAAAGGAAGAGATAGCGGTAGATGAAGAAGCGAAGGAAGAGATAGAAGTA
GATGAGGAATAG

Peptide Sequence

PEP ID

Solyc04g008820.3.1
PEP Infomation

High mobility group protein (AHRD V3.3 *-* O49948_SOLTU)
Sequence

TKDFFSLSLFSISRAFSVLRVVIKIWKKMAGGGASTKASNGGPTRVRKRVEVESAASAAS
LKRAKDGSAFARCEECSKDVPIALISFHNCSLDAKIKMNLEAQVVENQTEVKKPAAKSKE
KSTEPKAKREKKPKNPNAPKRPPSAFFVFMNDFRQEFKAANPDCKSVSMVAKEGGEKWKS
MTDEEKKPYQEKAAELKAAYEKSFKSNTDADNSNDDDEEPEKEVKEEIAVDEEAKEEIEV
DEE*

Transcript Sequence

Transcript ID

Solyc04g008820.3.1
Transcript Infomation

High mobility group protein (AHRD V3.3 *-* O49948_SOLTU)
Sequence

ACCAAAGATTTTTTTTCTCTCTCTCTGTTTTCGATTTCTAGAGCTTTTTCTGTGTTAAGG
GTTGTTATCAAGATTTGGAAAAAAATGGCTGGTGGTGGAGCATCGACTAAGGCTTCAAAT
GGTGGTCCTACTAGGGTGAGGAAGAGGGTTGAAGTTGAATCTGCTGCTTCTGCTGCTAGT
CTTAAGCGTGCTAAGGATGGAAGTGCTTTTGCTCGTTGTGAAGAATGCAGCAAGGATGTG
CCTATAGCATTGATTAGCTTCCACAATTGCAGTCTTGATGCAAAAATCAAGATGAATTTG
GAGGCTCAAGTTGTGGAAAATCAGACTGAAGTGAAGAAACCAGCAGCAAAGAGCAAGGAG
AAATCAACAGAGCCAAAGGCTAAGAGGGAAAAGAAACCCAAGAATCCTAATGCTCCGAAA
CGCCCTCCTAGTGCTTTCTTCGTGTTCATGAATGATTTTCGACAGGAATTTAAGGCTGCA
AATCCTGATTGCAAGAGTGTCTCCATGGTTGCTAAGGAGGGTGGTGAGAAATGGAAGTCC
ATGACTGATGAGGAGAAAAAACCATATCAGGAAAAGGCTGCAGAGCTCAAAGCAGCATAT
GAGAAATCCTTTAAGTCTAACACTGATGCTGATAATTCCAATGATGACGATGAGGAGCCT
GAGAAGGAAGTAAAGGAAGAGATAGCGGTAGATGAAGAAGCGAAGGAAGAGATAGAAGTA
GATGAGGAATAGAGCTGTTAGTTTTTGAACTGGTGTAGCAACCATCTTCAATATTCTTGA
ATTGACTAGTTTTGAAGGCTTGTGTAAATTTTTGATCAATTGTCAACTTAGTTGTTCTAC
TTGAAGTAGTTATATATGGAAACTTTAGTTCTTGCTTACAAAGTCTTCGGAATGATTTTC
TTATTATAGCTATCTACTTCAAGTAATGATGCAAGTTCTCTTGCGATTGATCATGTGACA
AGAATCATTCAAGTGAATTTATTCATTTCATATTGAATCTATGTGAAGTAAACACTGACT
AACAATGTGAGATGACAGAGTTGTAACTTGTACAAGTAGTACTAGAATTCAAAAAAAAGT
GAAGTAAACTGTTTGTTTGTTAACAAACATAAATTCCTATAAATGGAGTCAGCAGTTACT
GGCCCAACTTGCCTTGTTTCGTTCCCTTACAAGGCGGCAAAGGCTTGGCACACAGACATA
AATTGTGGGCATAGGCAGCTGCAGGGAAGATATTGTATGGTCTGCCTTGTGGTATTTCAC
CACATAATCTGTTGGCTCTGAAGTTTGCGTGTTTCAATGCTTCAATCCCCAACAAGCTAT
CTGGTATTTTCCCCGAGAGTCTGTTGATCGATAAATCTAACCATTGCAACTTCACTAGTG
ATCCTAAACTTACTGGAATTGTACCAGTAATCTGGTTTCTTGATATATCAAACCTCTCAA
GCTTATCAAGATTCGATATTGAAGTTGGGATTTGACCTGAAATCTTGTTGCTTCCTATGT
TGAGTACTTTGAGGTTTAAGCCACTGACAAACTCTGGGATGCTCCCAGAGAGTTGATTGT
TTGAGACGTCAATTGCTTCCAAGAATTTGCTTGTCTTGTTGCTTAACATCCTCGACAGAG
ACCCGAATAGCTGGTTTGAATGAAGATCAAGAGATGAAATCCCATCAGGCAACTTGATCA
CAGCAACATCAGATTTCAACTGGTTGTTTGATATCTTCCCCTTTTGCAAGCTCAACATTC
TTGCAAAGAAACTCGATATCCCACCTGTGAAGGCGTTATCCGACAAGTCTATAGAGTTCA
ACGAATCAGGCCTAGTGAAATTCGGAAGCATCCCACGAAGCTTACAACCTGCTAAATTGA
CATCAGAAAGCTCTCTAGTCCTAATCCATTCAGGCACTACTCCAAGATTGAACTTGTTGT
AAGACAAATCTATTGACAAAAGTGAAGGAACCCCTTTAGAGAAAGCAATAGGCAAAGGAT
CGAAAAGTTCATTTCTAGACAAACTAAGGTTCCAAAGATTTGGTAATCCTGCAATAGACT
CAGGTATTTGACCTGTCAACTTGTTAAAACTCAATGACAATGAAGTAAGTGCTTTCATTT
TCCCAATTTGTGATGGAATCCTCCCTGTTATTCGATTATGATCCATCGATAAAAACGACA
GCTTGATCAAACCACACAAGGAAACAGGAACCTCCCCTGACAACTCATTACTTGAAAGAT
CAATATATGTCAAATTTCGAAGCTGTCCAAGAAAATTTGGAACAACCCCGGATAGTAAAT
TGTGACTCAGATCCAAAGATTGCAATGCAGCAAGATTCTTGACACCAATTGGGATAACCC
CAGTTAGCATATTGTCTGCTAAACTCAACTGTTGCAGATTCTTGAAGTTTCCTAATACAG
AAGGTATCTGTCCTGTCAAATGATTACCACTAAGTGAAAGTGTTTGAAGTGACTCCAAAT
GGGATAAACCAGAAGGTATATCTCCTTGTAGTGAATTATCATCCAAGATCAACTGCTTCA
ATCTTGAAAGTTTCGAAAAACTTTCCGGTATAGCACCAGCAATATGTTTCATTCCACTTA
CAATCAATGTCTCCAGGAAAACCAAATCACCAAGAGATGATGACAAAGTACCCTTCATGT
AAACACTAATGTCACTCTCAGAAGGTGTTTGTAACACCAATCTATTCACTCTCCCTGTTG
AAACATCACATTCTACACCTTCCCAGCCTCCTCCACAACAATCTTTACCAGTCCATGAAG
ACAGAAAACCAGTAGTATCTTTAAAAATGTGATCTTTGAATCCAACAAGAGCAAGTCTAT
CAGTTTCAACACAAATTTGGGGTTGTTGGGCTAGTGACATTTGGTGAAAGAATGATGAAA
TCAACAAAATCTTGAAAACCAACATTTGAAAATGCATTTTGGGAAGTGGGGTTTTGAAAA
AAAACTTGACTTTTGAAAGAACACAAAAGGGTCTATATGTATAGTTTATGATATAAGATT
TGAAAAAGAAGAAAGATTGGATTTTTCTTGTTTATTCATCACTTAGACAAGAAGGTACAA
TGATGGGGAAAAAAAAGATAATTGGGAAAAATTTGAAGGGAGATAAAGAATGATTTGGTC
TGAACAATTGTTTCACTTATTTATAGAAAAAAAAAACCTTAAAGTAGCAACTATAATTTA
TGGTAACAAAGATTGTGTTCTATTTTGAAAAAATAAATCAGAGTTGTCGTGGAGTAGTAA
TATTCTTTTATCGTTAACTAAATTTTCTTTGTTATATAGTGAGGATTTTACCAGTTATCA
CCACATAAGATACACGAA