Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc04g008720.3.1
CDS Infomation	Katanin p80 WD40 repeat-containing subunit B1 homolog (AHRD V3.3 *** K4BP28_SOLLC)
Sequence	ATGCCATATTGCTTGTCAGGTCATTCAAGCGGAATCGATTCAGTTAGCTTTGATTCTTCA GAAGTTCTGGTAGCTGCAGGAGCTGCCAGTGGTACTATTAAGCTTTGGGATCTAGAGGAA GCCAAAATTGTTCGAACTCTCACTGGACATAGATCCAATTGTATATCATTGGACTTCCAT CCCTTTGGTGAGTTCTTTGCATCTGGGTCTCTGGACACAAATCTAAAGATATGGGATATT AGACGCAAAGGGTGCATTCACACATACAAAGGTCACACTCGAGGTGTCAATACCATCAGG TTCACGCCAGATGGACGCTGGGTTGTATCTGGTGGAGAAGACCGTAGTGTAAAGATATGG GATTTGACTGCAGGGAAGCTTTTACACGATTTCAAATGTCATGAAGGAAAAATTCAGTGC ATAGACTTTCATCCTCATGAGTTCTTATTGGCTACAGGTTCTGCTGACAAGACAGTTAAG TTCTGGGACCTTGAATCTTTTGAACTCATAGGTTCTGCTGGACCTGAGACAACAGGAGTG CGTTCCATGGCCTTCAATACTGATGGAAGAACCCTTCTTTGTGGTTTACATGAGAATTTG AAGGTTTTCTCATGGGAACCAATTAGGTATCATGATACAGTAGATGTTGGATGGTCTACA TTGTCTGATCTAAGTATTCATGAAGGAAAACTTCTTGGATGTTCTTATAATCAAAGTTGT GTTGGAGTGTGGGTTGTCGATATTTCGTGTCTTGAACCATACACAATGGATAGTTCTACA CCATCCAATGGTCACTCAGCAGCAAAATCCAATTTAAGAGTGAATCTATCCACTTCAGCT GAGGATAATACAGATGCAAGTTGTCGGGGACAATTAATTTCACAAAACTCTGATCTTGTG AAAGAGTCTAAGTCATTCAGAAGACTTTCTTTGTCACAAAACATGGTTCTTCAGAGGGAT TCTGCTGCTCTTACTACTATCACAGATACTCCTGGCACCACACAAAAAGTAAATCTCAGT ACTGGTCCAAAGGCACCTCCATTCAGCTCAAGAGCAGTTCCTAATACAACGGGTGTTAAG AGGAATTCAGCAAAAACCCATTCAACAGAAAATGGCTCTATTGTCAATAAGGAGATTATA CCTGTTCTTGTCCCAAGAAATAATGAAAGAACAGAGCTCGCCTCTGAATGCAGGAAAGGA GGAGTTGCAGGAAGGGAAATTCCACAAAGATTGCAGCCAAAAGTATCTGATTGGAAGTCT CCTACTACCAACGAAGACCTCGGGAGGCCAACTTCTGCAGCGCAGTCTGAAGTTGAAGTG CCTAAGGCTATTGAAAGTAGTAGCCCTGCAGACAGGAACAATTTTCCTTCTGTTAAATGC TCAATATTTGAAACTGCTGCAACTGAGAGAAGTGTGAATGATGACACGAATTTAGTTTCC ACAAAACTTGATATCAATACAGCACATGAGCCACTCTCCAGACACCCAATTGAAAATTAT GAAGCCCGTGGAAATATTCTTAATAGGAAACCTTATTCCATGCTAGGTCAACAAAGAGGT AGGACACGATCTACTATTGCAAACTGGGAAAAGAGAGATAAAGTTCCTGGATACGAGGGT CTTGCTCCCTGCATTGCTGGGGCGGTACCTGCTCCAGATGTGGTTCCCACCAATGTGAAT TTAACTCATCGTAATTCAAAAATCATACCTGAAAAGAGAGAAGACCCCTTATCAGCTGTA AGTGACGCGGGTACTGCTGACGATGAGGATATCATTGCTGACTTGATGGAACAGCACAAA GAATTTGTTGGCTCGATGCAATCTCGTTTGGCTAAATTACAGGTTGTCTACCAGTACTGG AAAAGACATGATATTAAAGGGGCAGTAAGTGTAATGGAGAAGATGGCAGATCATGCTGTG CTTTCTGAGTTAGTGAGTTTCTTGGCAGAGAAAAATGACATTATCACATTAGAAATTTGC ACATGCCTTCTACCACTTCTCACGGGGCTGCTTGAGAGCAAGTTGGATAGACATCAAGAT ATTTCATTGAGTATGCTACTCAAGCTTGTTAAAGTATTTGGTTCACTGATTTATACTTCG TTGTCTACTCCAACATCAGTTGGTGTTGATATTGAGGCAGAGAAAAGGATGGAGCGCTAC AATCTCTGCTTTATTGAACTTGAAAAAGTCAAGAGTTGTCTACCTGCTCTTTCGAGAAGA GGAGGTTCAATTGCCAAAACTGCTCAGGAGCTGAATCTAGCACTACACGAAGTTTCATGA

Peptide Sequence

PEP ID	Solyc04g008720.3.1
PEP Infomation	Katanin p80 WD40 repeat-containing subunit B1 homolog (AHRD V3.3 *** K4BP28_SOLLC)
Sequence	MPYCLSGHSSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISLDFH PFGEFFASGSLDTNLKIWDIRRKGCIHTYKGHTRGVNTIRFTPDGRWVVSGGEDRSVKIW DLTAGKLLHDFKCHEGKIQCIDFHPHEFLLATGSADKTVKFWDLESFELIGSAGPETTGV RSMAFNTDGRTLLCGLHENLKVFSWEPIRYHDTVDVGWSTLSDLSIHEGKLLGCSYNQSC VGVWVVDISCLEPYTMDSSTPSNGHSAAKSNLRVNLSTSAEDNTDASCRGQLISQNSDLV KESKSFRRLSLSQNMVLQRDSAALTTITDTPGTTQKVNLSTGPKAPPFSSRAVPNTTGVK RNSAKTHSTENGSIVNKEIIPVLVPRNNERTELASECRKGGVAGREIPQRLQPKVSDWKS PTTNEDLGRPTSAAQSEVEVPKAIESSSPADRNNFPSVKCSIFETAATERSVNDDTNLVS TKLDINTAHEPLSRHPIENYEARGNILNRKPYSMLGQQRGRTRSTIANWEKRDKVPGYEG LAPCIAGAVPAPDVVPTNVNLTHRNSKIIPEKREDPLSAVSDAGTADDEDIIADLMEQHK EFVGSMQSRLAKLQVVYQYWKRHDIKGAVSVMEKMADHAVLSELVSFLAEKNDIITLEIC TCLLPLLTGLLESKLDRHQDISLSMLLKLVKVFGSLIYTSLSTPTSVGVDIEAEKRMERY NLCFIELEKVKSCLPALSRRGGSIAKTAQELNLALHEVS*

Transcript Sequence

Transcript ID	Solyc04g008720.3.1
Transcript Infomation	Katanin p80 WD40 repeat-containing subunit B1 homolog (AHRD V3.3 *** K4BP28_SOLLC)
Sequence	TTAAAAACAAATTTAATTTTTATGGAAAAAACATAAAAGGACCATTTTTGTCATTTTCTC GTGATTTTGAAAACGCCATTTCTCCTTCTTCTTCACCTTCTCAAATTTTCCCCTTTTCGC CATTGTTTTCAATCCTCATTGTGAAGAAAAATCATCGCAAAAATTGCATTTTTTGAAATT GAATTTGAGTGAAAAGAAGCAATAGTTTGTTGAATATACTTTAATTTTTTTTTAGATTTT TTTTCATCTATTAATCGCCAAAATTGACAGCGTTTATGCAATGAAGGACGGAGAACAAAG GGTTTATTGATTTGTTGCGTAATGTGCTGTGAATCGAGAAGTGGGTTTTGTTTGATTTGG TGGTTTTGACTCTCTTTCGATGACAACTACCAAACGTGCTTATAAGCTACGTATCCTATT TTTTTTTTTGGTTTGTATTGTTAGTTTATTTGCTTAATTTTGTTGTTTGGCTTGCAATTG GTCATATAGGGTAACAATTTCTTCATAAAAATTGAAAATTGTGCAATGTGAGGAATTTGT AGCACATTCTTTAAGTGTGAACTGCTTAAAGATTGGGAGAAAATCATCCAGGGTTCTTGT AACTGGGGGAGAAGATCACAAGGTTAATCTCTGGTCCATTGGCAAGCCTGATGCCATATT GCTTGTCAGGTCATTCAAGCGGAATCGATTCAGTTAGCTTTGATTCTTCAGAAGTTCTGG TAGCTGCAGGAGCTGCCAGTGGTACTATTAAGCTTTGGGATCTAGAGGAAGCCAAAATTG TTCGAACTCTCACTGGACATAGATCCAATTGTATATCATTGGACTTCCATCCCTTTGGTG AGTTCTTTGCATCTGGGTCTCTGGACACAAATCTAAAGATATGGGATATTAGACGCAAAG GGTGCATTCACACATACAAAGGTCACACTCGAGGTGTCAATACCATCAGGTTCACGCCAG ATGGACGCTGGGTTGTATCTGGTGGAGAAGACCGTAGTGTAAAGATATGGGATTTGACTG CAGGGAAGCTTTTACACGATTTCAAATGTCATGAAGGAAAAATTCAGTGCATAGACTTTC ATCCTCATGAGTTCTTATTGGCTACAGGTTCTGCTGACAAGACAGTTAAGTTCTGGGACC TTGAATCTTTTGAACTCATAGGTTCTGCTGGACCTGAGACAACAGGAGTGCGTTCCATGG CCTTCAATACTGATGGAAGAACCCTTCTTTGTGGTTTACATGAGAATTTGAAGGTTTTCT CATGGGAACCAATTAGGTATCATGATACAGTAGATGTTGGATGGTCTACATTGTCTGATC TAAGTATTCATGAAGGAAAACTTCTTGGATGTTCTTATAATCAAAGTTGTGTTGGAGTGT GGGTTGTCGATATTTCGTGTCTTGAACCATACACAATGGATAGTTCTACACCATCCAATG GTCACTCAGCAGCAAAATCCAATTTAAGAGTGAATCTATCCACTTCAGCTGAGGATAATA CAGATGCAAGTTGTCGGGGACAATTAATTTCACAAAACTCTGATCTTGTGAAAGAGTCTA AGTCATTCAGAAGACTTTCTTTGTCACAAAACATGGTTCTTCAGAGGGATTCTGCTGCTC TTACTACTATCACAGATACTCCTGGCACCACACAAAAAGTAAATCTCAGTACTGGTCCAA AGGCACCTCCATTCAGCTCAAGAGCAGTTCCTAATACAACGGGTGTTAAGAGGAATTCAG CAAAAACCCATTCAACAGAAAATGGCTCTATTGTCAATAAGGAGATTATACCTGTTCTTG TCCCAAGAAATAATGAAAGAACAGAGCTCGCCTCTGAATGCAGGAAAGGAGGAGTTGCAG GAAGGGAAATTCCACAAAGATTGCAGCCAAAAGTATCTGATTGGAAGTCTCCTACTACCA ACGAAGACCTCGGGAGGCCAACTTCTGCAGCGCAGTCTGAAGTTGAAGTGCCTAAGGCTA TTGAAAGTAGTAGCCCTGCAGACAGGAACAATTTTCCTTCTGTTAAATGCTCAATATTTG AAACTGCTGCAACTGAGAGAAGTGTGAATGATGACACGAATTTAGTTTCCACAAAACTTG ATATCAATACAGCACATGAGCCACTCTCCAGACACCCAATTGAAAATTATGAAGCCCGTG GAAATATTCTTAATAGGAAACCTTATTCCATGCTAGGTCAACAAAGAGGTAGGACACGAT CTACTATTGCAAACTGGGAAAAGAGAGATAAAGTTCCTGGATACGAGGGTCTTGCTCCCT GCATTGCTGGGGCGGTACCTGCTCCAGATGTGGTTCCCACCAATGTGAATTTAACTCATC GTAATTCAAAAATCATACCTGAAAAGAGAGAAGACCCCTTATCAGCTGTAAGTGACGCGG GTACTGCTGACGATGAGGATATCATTGCTGACTTGATGGAACAGCACAAAGAATTTGTTG GCTCGATGCAATCTCGTTTGGCTAAATTACAGGTTGTCTACCAGTACTGGAAAAGACATG ATATTAAAGGGGCAGTAAGTGTAATGGAGAAGATGGCAGATCATGCTGTGCTTTCTGAGT TAGTGAGTTTCTTGGCAGAGAAAAATGACATTATCACATTAGAAATTTGCACATGCCTTC TACCACTTCTCACGGGGCTGCTTGAGAGCAAGTTGGATAGACATCAAGATATTTCATTGA GTATGCTACTCAAGCTTGTTAAAGTATTTGGTTCACTGATTTATACTTCGTTGTCTACTC CAACATCAGTTGGTGTTGATATTGAGGCAGAGAAAAGGATGGAGCGCTACAATCTCTGCT TTATTGAACTTGAAAAAGTCAAGAGTTGTCTACCTGCTCTTTCGAGAAGAGGAGGTTCAA TTGCCAAAACTGCTCAGGAGCTGAATCTAGCACTACACGAAGTTTCATGAGTTTAGTATT ATTGCATATAATACCGGAAGTAACAATGGTGTTGCTGAACTTTGAGTGACATTTGTAGAT GCTGCACTGCATGCTTTTGGTACCTTGCAGAGCTAGTATCCTCTATGCAGATGCAACACT TACTACTAATTTCTTCACATTACACTTGTCATCATCGATAGTTATG