Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g008100.2.1
CDS Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI)
Sequence

ATGGAGTTGTTAATGGTTCCTAGCCATTTCAAGTGTCCAATTTCATTAGATTTGATGAGT
GATCCTGTGACGTTGTCGACGGGGATCACGTACGATCGTGTGAGTATCGAGACATGGATC
GAAAACGGAAATCAAACATGCCCCATCACTAAAAAATTGTTGAACACACTTGAGCCAATT
CCTAATCACACCATGAGGAAAATGATCCAAGAATGGTGTGTTGCGAATAAAGAATATGGG
ATCGAGAGGATCCCAACTCCAAGAATCCCCGTTACCTCATCAGAGGTAACGGGGATTCTT
AGAAAGATCGAGTCTTGCTGCAAATTGCAGCAAGGCTCAGAGTCTAGTCGCGAACTAGTA
ATGAAAATGAGGAATATGATAAAGGAAAGTACAAGGAATAAACGTTGCTTTGTTGCAAAT
GGTGCAGGGAAGATGTTATCATCTACACTTGATTGTTTTACGGAGAAATCATCCGTTTAC
GAAGTTGAAACGATGGAAGAAATTATATCAGCTTTGACAATATTATTGCCTCTAGATAGT
GAGTCCAAGTCGATTCTTGGATCAAAATCATCTTTAAATTGCATGATTTGGTTCTTGAAA
TGTGGAAGTTTATCGAGCCGGAGAAATTCAGTGTTTTTGCTTAAAGAAATCATGAGGATG
GAAGAAGTATGGAGAGTTGAAGAGTTATTAAAGATTGATGGAGGTTTAGAATCATTAGTG
AAGTTAATAAAAGAGCCAATTTGTCCTACAACTACAAAAGCTTCTTTATTAACAATTTAC
CATATGGTTAATTCATCACAATTATCAAATGACAAAGCAAGATCAAAATTTGTTGATTTG
GGGTTAGTGGAATTGCTTATAGAGACACTTGTGGATTGTGAAAAGAGCATATGTGAAAAA
GTATTGGGAATTTTGGCTAGACTTTGCAACTCACAAGAAGGGAGAAAAAGGGCTAATAAT
TATGCCTTAACTATTCCTGTTTTGATCAAGAAATTATTGAGAGTTTCAGATTTAGCAACT
GAATTTTCAGTTTCAATATTATGGAAGTTATTAATTGGGAAGAATGATAATGTTGTGCTT
ATTAATGAAGCACTTCAAGTTGGTGCATTTCAAAAGCTATTGTTACTAATACAAGTTGGT
TGTGGTGAAAATACTAAGGAGAAGGCAAGTGAGTTGTTGAAATTGTTGAATTTACATAGA
GGTGAGGTAGAGTGTATTGATTCTTTGGATTTGAAGAACCTAAAGAGGCCATTTTGA

Peptide Sequence

PEP ID

Solyc04g008100.2.1
PEP Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI)
Sequence

MELLMVPSHFKCPISLDLMSDPVTLSTGITYDRVSIETWIENGNQTCPITKKLLNTLEPI
PNHTMRKMIQEWCVANKEYGIERIPTPRIPVTSSEVTGILRKIESCCKLQQGSESSRELV
MKMRNMIKESTRNKRCFVANGAGKMLSSTLDCFTEKSSVYEVETMEEIISALTILLPLDS
ESKSILGSKSSLNCMIWFLKCGSLSSRRNSVFLLKEIMRMEEVWRVEELLKIDGGLESLV
KLIKEPICPTTTKASLLTIYHMVNSSQLSNDKARSKFVDLGLVELLIETLVDCEKSICEK
VLGILARLCNSQEGRKRANNYALTIPVLIKKLLRVSDLATEFSVSILWKLLIGKNDNVVL
INEALQVGAFQKLLLLIQVGCGENTKEKASELLKLLNLHRGEVECIDSLDLKNLKRPF*

Transcript Sequence

Transcript ID

Solyc04g008100.2.1
Transcript Infomation

U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI)
Sequence

ATGGAGTTGTTAATGGTTCCTAGCCATTTCAAGTGTCCAATTTCATTAGATTTGATGAGT
GATCCTGTGACGTTGTCGACGGGGATCACGTACGATCGTGTGAGTATCGAGACATGGATC
GAAAACGGAAATCAAACATGCCCCATCACTAAAAAATTGTTGAACACACTTGAGCCAATT
CCTAATCACACCATGAGGAAAATGATCCAAGAATGGTGTGTTGCGAATAAAGAATATGGG
ATCGAGAGGATCCCAACTCCAAGAATCCCCGTTACCTCATCAGAGGTAACGGGGATTCTT
AGAAAGATCGAGTCTTGCTGCAAATTGCAGCAAGGCTCAGAGTCTAGTCGCGAACTAGTA
ATGAAAATGAGGAATATGATAAAGGAAAGTACAAGGAATAAACGTTGCTTTGTTGCAAAT
GGTGCAGGGAAGATGTTATCATCTACACTTGATTGTTTTACGGAGAAATCATCCGTTTAC
GAAGTTGAAACGATGGAAGAAATTATATCAGCTTTGACAATATTATTGCCTCTAGATAGT
GAGTCCAAGTCGATTCTTGGATCAAAATCATCTTTAAATTGCATGATTTGGTTCTTGAAA
TGTGGAAGTTTATCGAGCCGGAGAAATTCAGTGTTTTTGCTTAAAGAAATCATGAGGATG
GAAGAAGTATGGAGAGTTGAAGAGTTATTAAAGATTGATGGAGGTTTAGAATCATTAGTG
AAGTTAATAAAAGAGCCAATTTGTCCTACAACTACAAAAGCTTCTTTATTAACAATTTAC
CATATGGTTAATTCATCACAATTATCAAATGACAAAGCAAGATCAAAATTTGTTGATTTG
GGGTTAGTGGAATTGCTTATAGAGACACTTGTGGATTGTGAAAAGAGCATATGTGAAAAA
GTATTGGGAATTTTGGCTAGACTTTGCAACTCACAAGAAGGGAGAAAAAGGGCTAATAAT
TATGCCTTAACTATTCCTGTTTTGATCAAGAAATTATTGAGAGTTTCAGATTTAGCAACT
GAATTTTCAGTTTCAATATTATGGAAGTTATTAATTGGGAAGAATGATAATGTTGTGCTT
ATTAATGAAGCACTTCAAGTTGGTGCATTTCAAAAGCTATTGTTACTAATACAAGTTGGT
TGTGGTGAAAATACTAAGGAGAAGGCAAGTGAGTTGTTGAAATTGTTGAATTTACATAGA
GGTGAGGTAGAGTGTATTGATTCTTTGGATTTGAAGAACCTAAAGAGGCCATTTTGA