Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g007640.3.1
CDS Infomation

U-box domain-containing protein 10 (AHRD V3.3 *** A0A061E7I3_THECC)
Sequence

ATGGCCGGCGGAGAACTCATTGCCGTCGCCGGCGACTCTACCAAAATCCCTCTCCAGGTT
GTTCATGATGTTTGTCGAATTTCCGGTGCCGGATTTGCTGGTTTCTTCAAGAAAGACTGT
ACTGATTTAGCTAGAAGAGTGTCCCTTTTGGCTTATTTGCTTGAGGAAATCAGAGATTCC
AACACCCATTTGGGTTCTTCATCATCTTCCCATGATTCATGCTTGTATGATCTCTCCATA
GCTCTCAAAGCTGCAAAAAGACTTCTTTTAGCAGCAAATGACTTTGATCCCAAGATCTCA
GCTGATGCGGAAAGGAAGAAAATTGTCTTTCAATTTCAATGTGTAACATGGAAATTGGTG
AAATCCCTAGGCAGCTTACCATATGACCAGTTTGACATATCAGAAGAAGTACAAGAGCAG
GTTGAATTGGTCAGATCACAGTTGACACGAGCTAAAGAGAGGTATGGTGGACCTTTGGCT
TCATATGTATTATCTCGAGCATTATCCCAACCATTAGATAAGGAGATTGATCCGCTTCAG
TCGGGCAGTCGGGGAGTTGGAAGTTTACATCTAGAAAATGTTGGCAATATTGATCATGAA
GTTTGGCCAAAACTTGGAGGTCTTCCCTTAGGTAACACCCCAAACGGCAATGTTTGTGTT
CAGATAGTTCAGGAACCAGAAAATCTAAGGAATTCATCCAAAAATTCTGAGGTTACTTCT
CCCAAAAGTCCTGGTTTGGCCAGGGAAGATGACTCACCCAGCAAGAAACTTGTGGAGAGT
AAGAAGCCCAATTCTCCTATAATTCCTGAAGAGTATCTTTGCCCTATATCCCTTGAGCTC
ATGAGGGATCCTGTAATTGTGGCCACTGGACAGACTTACGAGAGATCTTTCATACAAAGA
TGGATAGACGGTGGCAACACAAGATGCCCAAAAACTCAGCAAATACTCCAAGATCTTACG
CTGACACCAAATATTGCTTTAAGAAGTCTCATTTCTGATTGGTGTGCAAAGAACAACGTA
GAGCAGCCAACTGCATTAGCAAATGGGAGAATAAAGCGAAGTGATGGATCGTTTCGTGAT
GTTAGTGGGGATATAGCAGCTATTGAGGCAATTGTACGCAAACTTTCAAGCAGGTCCACT
GACGATCGGAGGGCTGCAGTAGCGGAGATCCGGTCTCTATCCAAAAGAAGCACAGACAAC
AGAGTTTTGATTGCTGAAGCTGGAGCAATCCCGTTATTGGTCAACTTGTTGACATCTGAA
GACAGTCAAATCCAAGAAAATGCTGTCACTTCTATTCTTAACCTTTCTATATTTGGCAAC
AACAAGGGGCTTATCATGCTTGCCGATGCTGTTCCTTCAATTGTTCAAGTTCTCAGAGCT
GGAAGCATGGAAGCAAAAGAAAATGCAGCAGCGACCATCTTTAGTTTATCACTTGGAGAT
GAGAACAAAATTATAATAGGTGCATCGGGGGCCATCCCAGCTCTGGTAGAATTGCTTCAG
ACTGGAAGCACCAGAGGGAAGAAAGACGCTGCAACAGCATTATTTAACTTGTGCATATAT
CAAGGAAACAAGGGCAGGGCTGTTCGGGCAGGGATTATACCAGTACTGTTAATGATGCTG
AAAGATTCAAGCAGCTGCATGGTTGATGAAGCCTTGACCATTCTTTCAGTTCTTGCCAGC
CACCAAGAGGCCAAGGCTGCCATAGCAAAAGCTAGCACGATTCCTGTATTGATAGATCTA
CTAAGGACAGGTCTACCTCGTAATAAAGAGAATGCTGCTGCTATCTTGCTATCCTTGTGC
AAAAGAGATACTGTGAACTTATCTTGCCTTCGTAGGCTCGGTGCACTTATACCTCTTACA
GAGCTTGCTAATACTGGCACAGAAAGGGCCAAGAGGAAGGCTACTTCATTGTTGGAGCAC
CTTCAAAAACCTCTGCAACCTTGA

Peptide Sequence

PEP ID

Solyc04g007640.3.1
PEP Infomation

U-box domain-containing protein 10 (AHRD V3.3 *** A0A061E7I3_THECC)
Sequence

MAGGELIAVAGDSTKIPLQVVHDVCRISGAGFAGFFKKDCTDLARRVSLLAYLLEEIRDS
NTHLGSSSSSHDSCLYDLSIALKAAKRLLLAANDFDPKISADAERKKIVFQFQCVTWKLV
KSLGSLPYDQFDISEEVQEQVELVRSQLTRAKERYGGPLASYVLSRALSQPLDKEIDPLQ
SGSRGVGSLHLENVGNIDHEVWPKLGGLPLGNTPNGNVCVQIVQEPENLRNSSKNSEVTS
PKSPGLAREDDSPSKKLVESKKPNSPIIPEEYLCPISLELMRDPVIVATGQTYERSFIQR
WIDGGNTRCPKTQQILQDLTLTPNIALRSLISDWCAKNNVEQPTALANGRIKRSDGSFRD
VSGDIAAIEAIVRKLSSRSTDDRRAAVAEIRSLSKRSTDNRVLIAEAGAIPLLVNLLTSE
DSQIQENAVTSILNLSIFGNNKGLIMLADAVPSIVQVLRAGSMEAKENAAATIFSLSLGD
ENKIIIGASGAIPALVELLQTGSTRGKKDAATALFNLCIYQGNKGRAVRAGIIPVLLMML
KDSSSCMVDEALTILSVLASHQEAKAAIAKASTIPVLIDLLRTGLPRNKENAAAILLSLC
KRDTVNLSCLRRLGALIPLTELANTGTERAKRKATSLLEHLQKPLQP*

Transcript Sequence

Transcript ID

Solyc04g007640.3.1
Transcript Infomation

U-box domain-containing protein 10 (AHRD V3.3 *** A0A061E7I3_THECC)
Sequence

CTTCATAAACCCCCCATTGGTACCATATAGTTGTTGCATTGTGGTTGTATAGATAGCGGA
ATCCAACTTCACTATCTCCACCAACCACCACCATGGCCGGCGGAGAACTCATTGCCGTCG
CCGGCGACTCTACCAAAATCCCTCTCCAGGTTGTTCATGATGTTTGTCGAATTTCCGGTG
CCGGATTTGCTGGTTTCTTCAAGAAAGACTGTACTGATTTAGCTAGAAGAGTGTCCCTTT
TGGCTTATTTGCTTGAGGAAATCAGAGATTCCAACACCCATTTGGGTTCTTCATCATCTT
CCCATGATTCATGCTTGTATGATCTCTCCATAGCTCTCAAAGCTGCAAAAAGACTTCTTT
TAGCAGCAAATGACTTTGATCCCAAGATCTCAGCTGATGCGGAAAGGAAGAAAATTGTCT
TTCAATTTCAATGTGTAACATGGAAATTGGTGAAATCCCTAGGCAGCTTACCATATGACC
AGTTTGACATATCAGAAGAAGTACAAGAGCAGGTTGAATTGGTCAGATCACAGTTGACAC
GAGCTAAAGAGAGGTATGGTGGACCTTTGGCTTCATATGTATTATCTCGAGCATTATCCC
AACCATTAGATAAGGAGATTGATCCGCTTCAGTCGGGCAGTCGGGGAGTTGGAAGTTTAC
ATCTAGAAAATGTTGGCAATATTGATCATGAAGTTTGGCCAAAACTTGGAGGTCTTCCCT
TAGGTAACACCCCAAACGGCAATGTTTGTGTTCAGATAGTTCAGGAACCAGAAAATCTAA
GGAATTCATCCAAAAATTCTGAGGTTACTTCTCCCAAAAGTCCTGGTTTGGCCAGGGAAG
ATGACTCACCCAGCAAGAAACTTGTGGAGAGTAAGAAGCCCAATTCTCCTATAATTCCTG
AAGAGTATCTTTGCCCTATATCCCTTGAGCTCATGAGGGATCCTGTAATTGTGGCCACTG
GACAGACTTACGAGAGATCTTTCATACAAAGATGGATAGACGGTGGCAACACAAGATGCC
CAAAAACTCAGCAAATACTCCAAGATCTTACGCTGACACCAAATATTGCTTTAAGAAGTC
TCATTTCTGATTGGTGTGCAAAGAACAACGTAGAGCAGCCAACTGCATTAGCAAATGGGA
GAATAAAGCGAAGTGATGGATCGTTTCGTGATGTTAGTGGGGATATAGCAGCTATTGAGG
CAATTGTACGCAAACTTTCAAGCAGGTCCACTGACGATCGGAGGGCTGCAGTAGCGGAGA
TCCGGTCTCTATCCAAAAGAAGCACAGACAACAGAGTTTTGATTGCTGAAGCTGGAGCAA
TCCCGTTATTGGTCAACTTGTTGACATCTGAAGACAGTCAAATCCAAGAAAATGCTGTCA
CTTCTATTCTTAACCTTTCTATATTTGGCAACAACAAGGGGCTTATCATGCTTGCCGATG
CTGTTCCTTCAATTGTTCAAGTTCTCAGAGCTGGAAGCATGGAAGCAAAAGAAAATGCAG
CAGCGACCATCTTTAGTTTATCACTTGGAGATGAGAACAAAATTATAATAGGTGCATCGG
GGGCCATCCCAGCTCTGGTAGAATTGCTTCAGACTGGAAGCACCAGAGGGAAGAAAGACG
CTGCAACAGCATTATTTAACTTGTGCATATATCAAGGAAACAAGGGCAGGGCTGTTCGGG
CAGGGATTATACCAGTACTGTTAATGATGCTGAAAGATTCAAGCAGCTGCATGGTTGATG
AAGCCTTGACCATTCTTTCAGTTCTTGCCAGCCACCAAGAGGCCAAGGCTGCCATAGCAA
AAGCTAGCACGATTCCTGTATTGATAGATCTACTAAGGACAGGTCTACCTCGTAATAAAG
AGAATGCTGCTGCTATCTTGCTATCCTTGTGCAAAAGAGATACTGTGAACTTATCTTGCC
TTCGTAGGCTCGGTGCACTTATACCTCTTACAGAGCTTGCTAATACTGGCACAGAAAGGG
CCAAGAGGAAGGCTACTTCATTGTTGGAGCACCTTCAAAAACCTCTGCAACCTTGACTGG
TATTCTATCAGCGAAGGATTCATTAATTGCTTCTTTCATTCTTACCTAACCGTGAATTAC
ACGATTCCATTTATAGTGTGATATAAAATCTGAGAAAACGAACATGAGAAAATAATTCAT
TCTCATTGCTTGTTGCATCAGTGTATCTATATTTAGTCTGTTTTCGAGTGAGTAACTGAT
TCGTTTGACCTGTATTTTTTTTCACTATTTGTTACTAATTGATCAATTTGATGTCTGCCA
CACTAAGGTGTGACGGAAATTTATCAACTCTGTGTAAATGAAACATTTTGATTTGTGAAA
AATTGCTCTTTTCTTTTCCTTTATCCTTC