Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc04g007280.3.1
CDS Infomation	Nuclear pore complex Nup98-Nup96 (AHRD V3.3 *** A0A0B0NW09_GOSAR)
Sequence	ATGTTTGGGTCCACGAATGCTTTCGGGCAGTCATCTTCTAGCCCATTTGGGTCACAATCA GGTTTCGGGCAGACAAGTAATAACCCATTTGCTCCAAAACCTTTTGGCAGTACAAATCCA TTTGGTTCTCAATCAGGTGCTTCCTTTTTTGGTAGCACTTCCACTGGAGTGTTTGGAACC CCCCAATCTTCTTCACCTCTGGGGTCTACATCAGTTTTTGGTGCATCATCCTCACCTGCA TTTGGAGCTTCTACTACCACTTTTGGCAGTTCATCACCAGCATTTGGGAGTTCATCAGTA TTCGGTCAAAAGCCAGCTTTTGGCGGCTTTGGTTCAAGCAGTGCTCAAACAAGTCCTTTC GGCAGCTCGTTTCAACAATCACAGCCGGCATTTGGGAGTGGTCTATTCGGCTCATCTACA CCTTTTGGTACTTCAAGTCAACCTGCATTTGGTACTCCGAGTACTCCAACATTTGGTTCA TCAACGACCCCTGCTTTTGGTGCCCCAACGAGTACACCAGCTTTTGGTACATCAAGTACT CCAGCCTTTGGTTCTACACCTAATCCAACCTTTGGCAGTACAAGCAGCCCATTTGGTGTG ACAAATCCTCCTGTTTTTGGATCTGGCACTCCGTCCTTTGGTACTACCACTTCTTCTGCC TTTGGCTCCACATCAACTCCTGCTTTTGGTACTCCAAGTGCTCCTTCGTTTAGTTTTGGA TCCTCTCCTGCATTTGGCCAATCAACATCTGCTTTTGGCAGTAGCCCGTTTGGCACAACA ACGTCAGCTTTTGGTGCTCAAAGTTCTGCCTTTGGAGCCCAAACTTCTGCATCATCTTTC GGAAACCCTAGTTTTGGACAATCTGCCGTTGGTGGTCAACGGGGCGGAACACGAGTTGCT GCTTACCAGGCAACACCTGATGCAGATAATTCCAGTGGTACCCAGCCTGCGAAACTAGAG TCTATTTCGGCCATGCCAGTTTACAAAGAAAAGAGCCATGAAGAACTTAGGTGGGAGGAT TACCAGTTGGGAGACAAGGGAGGTCCTGCTCCTGCGGGTCAATCAACTGGTGGAATCAAT TTTGGAAGCTCAGCCTTCGCATCATCATCAACTTCCCCTTTTGGCCAATCATCTGCAAAT CCATTTACGTCCTCTACATCTTCCAACCCTTTTGCCCCCAAACCATCCACATTCAGTACT CCAAATTTTGGAGTCCCAACTACTCCGGCTTTTAATACCTCTGCCTTTCCAAGCTCAAAT ACATCTAATCCTTTTGGCTCTACATCCTCGACTTCCCCTTCCTTATTTGGATCAACTTCA GCTTTTGGACAAAGTACATCTCCGACCCTCTTTGGATCGGCTAGTGCTTCGGGTTTTGGG TCATCAACATCAATTTTTGGCTCCTCGTCTGCTCAGAATACTGCCTCAGCATTTGGTCCT AGCTTAAGCTTTGGTAACACCCAATCATCACCGTTATTCCAATCAACTACCCCTTCATTC GGACAGACGAACTCGGCCTTTGGACAGACCACATCATCTTTTGCCCAGACTACACCAGCT TTTGGTCAATCCAATTTGTTTAGTACACCTTCTACTGGCTTTGGTAGTAATCTGTTTTCA AGTGCACCACTGCTAAATACAAGCAGTACAATGGGATTTGGCCAAACAACGCCCTCTCTA TCAACTCCTTTTCAACTGACTCAGCCTTCTCATAGTTCTGCTTTTGGGTTCAATAACTTT GGTCAGACACAAGGAGCTGCTGCAAGTGGTTTTGGTGGCACTCCCAGCCTTTTCAGTCAG CCGCCAGCTATCCAAAGCTCAGTTGTCGCACAACCTTCAGTTGTTACTAATCCATTTGGA ACTTTACCAGCGATGCCTCAGATGTCAATTGGTCGTACTGGCACTTCTTCTTCTATACAG TATGGGATTTCTAGTTTACCGGTGGTTGACAAACCTGTTCCTGTCCGGATATCATCATTA CTAACTTCTCGACACATTTCTCAAAGACGGGTTAGGTTGCCGGCAAGGAAATATCATCCT AAAACTGAGGGGACTAAGGTACCGTTCTTTAGTGATGATGATGAAACACCAAGCACACCT AAGGCAGATGCATTGTTTGTTCCCAGAGAGAATCCAAGAGCTTTAGTAATTCGTCCAGTG GACCAGTGGCCTTCGAGAGGTGGTGTGGAGAAAGTATCACCATCAAAGCACATGTCTATC CCAGCGCATGAGAATGGTAAAACTGCTGAAGTTGTTTGTGCTCCAGTTAACGAGGCCAGT GCAAAAGATAAAAACAAAGATCCGGTTGAGAATGGCCTTGATAAAGAGGGCCTCGATAGT ACCAAACTGAACCAGAAACCTAATGGTCTCCACGAAGGGCAACATCTCCGAAAAGGAGGA GGGTCTTCCATTACCCTTACTGGCCATCGAGCTGGTGAGGCAGCAATTGTTTATGAACAT GGGGCTGACATTGAGGCTCTGATGCCAAAGCTCTGCCATTCCGATTATTACACAGAACCA CGGATTCAGGAATTGGCAGCCAAAGAAAGAGCTGAACCTGGCTTCTGTCGCCGTGTGAAG GATTTTGTGGTTGGAAGACATGGGTACGGTAGCATCAAGTTCATAGGGGAAACAGATGTC CGTCGTCTTGATCTTGAGTCTCTTATCCAGTTTAACAATCGGGAGGTGATAGTCTATATG GATGAAAGTAAGAAACCTCCTGTCGGCCAAGGTCTTAACAAGCCTGCTGAGGTGACACTT CTCAACATAAAATGTTTCGATAAGAAGACCGGACAACAGTATACAGAGGGTCCTAGAATC GAGAAATATAAAGAAATGCTTAAGAGGAAGGCAGGAGATCAAGGTGCTGAATTCGTGTCA TATGATTCCGTCAAAGGAGAATGGAAGTTCAAGGTGCAGCATTTCAGCAAATATTGGCTT CATGAAGACAACGAAGATGAATATAGCGAATATTTTGATGCCTAG

Peptide Sequence

PEP ID	Solyc04g007280.3.1
PEP Infomation	Nuclear pore complex Nup98-Nup96 (AHRD V3.3 *** A0A0B0NW09_GOSAR)
Sequence	MFGSTNAFGQSSSSPFGSQSGFGQTSNNPFAPKPFGSTNPFGSQSGASFFGSTSTGVFGT PQSSSPLGSTSVFGASSSPAFGASTTTFGSSSPAFGSSSVFGQKPAFGGFGSSSAQTSPF GSSFQQSQPAFGSGLFGSSTPFGTSSQPAFGTPSTPTFGSSTTPAFGAPTSTPAFGTSST PAFGSTPNPTFGSTSSPFGVTNPPVFGSGTPSFGTTTSSAFGSTSTPAFGTPSAPSFSFG SSPAFGQSTSAFGSSPFGTTTSAFGAQSSAFGAQTSASSFGNPSFGQSAVGGQRGGTRVA AYQATPDADNSSGTQPAKLESISAMPVYKEKSHEELRWEDYQLGDKGGPAPAGQSTGGIN FGSSAFASSSTSPFGQSSANPFTSSTSSNPFAPKPSTFSTPNFGVPTTPAFNTSAFPSSN TSNPFGSTSSTSPSLFGSTSAFGQSTSPTLFGSASASGFGSSTSIFGSSSAQNTASAFGP SLSFGNTQSSPLFQSTTPSFGQTNSAFGQTTSSFAQTTPAFGQSNLFSTPSTGFGSNLFS SAPLLNTSSTMGFGQTTPSLSTPFQLTQPSHSSAFGFNNFGQTQGAAASGFGGTPSLFSQ PPAIQSSVVAQPSVVTNPFGTLPAMPQMSIGRTGTSSSIQYGISSLPVVDKPVPVRISSL LTSRHISQRRVRLPARKYHPKTEGTKVPFFSDDDETPSTPKADALFVPRENPRALVIRPV DQWPSRGGVEKVSPSKHMSIPAHENGKTAEVVCAPVNEASAKDKNKDPVENGLDKEGLDS TKLNQKPNGLHEGQHLRKGGGSSITLTGHRAGEAAIVYEHGADIEALMPKLCHSDYYTEP RIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFIGETDVRRLDLESLIQFNNREVIVYM DESKKPPVGQGLNKPAEVTLLNIKCFDKKTGQQYTEGPRIEKYKEMLKRKAGDQGAEFVS YDSVKGEWKFKVQHFSKYWLHEDNEDEYSEYFDA*

Transcript Sequence

Transcript ID	Solyc04g007280.3.1
Transcript Infomation	Nuclear pore complex Nup98-Nup96 (AHRD V3.3 *** A0A0B0NW09_GOSAR)
Sequence	CCTATTTGTATGATGCAGCGACCTTCTGATAGGGCTTTTTCCGACCAAAACACACACTCT AACTCCGCCGAAGTTGTACAAACGCTAGCTTCCGGCGACCTTTTCAGGTGATATTTCTGC TGCTTTCAGATCGAAAACGAGCAGCTAGTCGTCCGTCGGCCGGCAACATCTTCCTTGTAC ATCTCAGCATAATGCATATACCTAGTGCATAGGATTTTTTTCATTCATTGAGGCATTATA TCTTAACTTGGACACTCCAACAACTGCTGGGAAAGATTTGACTATCCAACCATGTTTGGG TCCACGAATGCTTTCGGGCAGTCATCTTCTAGCCCATTTGGGTCACAATCAGGTTTCGGG CAGACAAGTAATAACCCATTTGCTCCAAAACCTTTTGGCAGTACAAATCCATTTGGTTCT CAATCAGGTGCTTCCTTTTTTGGTAGCACTTCCACTGGAGTGTTTGGAACCCCCCAATCT TCTTCACCTCTGGGGTCTACATCAGTTTTTGGTGCATCATCCTCACCTGCATTTGGAGCT TCTACTACCACTTTTGGCAGTTCATCACCAGCATTTGGGAGTTCATCAGTATTCGGTCAA AAGCCAGCTTTTGGCGGCTTTGGTTCAAGCAGTGCTCAAACAAGTCCTTTCGGCAGCTCG TTTCAACAATCACAGCCGGCATTTGGGAGTGGTCTATTCGGCTCATCTACACCTTTTGGT ACTTCAAGTCAACCTGCATTTGGTACTCCGAGTACTCCAACATTTGGTTCATCAACGACC CCTGCTTTTGGTGCCCCAACGAGTACACCAGCTTTTGGTACATCAAGTACTCCAGCCTTT GGTTCTACACCTAATCCAACCTTTGGCAGTACAAGCAGCCCATTTGGTGTGACAAATCCT CCTGTTTTTGGATCTGGCACTCCGTCCTTTGGTACTACCACTTCTTCTGCCTTTGGCTCC ACATCAACTCCTGCTTTTGGTACTCCAAGTGCTCCTTCGTTTAGTTTTGGATCCTCTCCT GCATTTGGCCAATCAACATCTGCTTTTGGCAGTAGCCCGTTTGGCACAACAACGTCAGCT TTTGGTGCTCAAAGTTCTGCCTTTGGAGCCCAAACTTCTGCATCATCTTTCGGAAACCCT AGTTTTGGACAATCTGCCGTTGGTGGTCAACGGGGCGGAACACGAGTTGCTGCTTACCAG GCAACACCTGATGCAGATAATTCCAGTGGTACCCAGCCTGCGAAACTAGAGTCTATTTCG GCCATGCCAGTTTACAAAGAAAAGAGCCATGAAGAACTTAGGTGGGAGGATTACCAGTTG GGAGACAAGGGAGGTCCTGCTCCTGCGGGTCAATCAACTGGTGGAATCAATTTTGGAAGC TCAGCCTTCGCATCATCATCAACTTCCCCTTTTGGCCAATCATCTGCAAATCCATTTACG TCCTCTACATCTTCCAACCCTTTTGCCCCCAAACCATCCACATTCAGTACTCCAAATTTT GGAGTCCCAACTACTCCGGCTTTTAATACCTCTGCCTTTCCAAGCTCAAATACATCTAAT CCTTTTGGCTCTACATCCTCGACTTCCCCTTCCTTATTTGGATCAACTTCAGCTTTTGGA CAAAGTACATCTCCGACCCTCTTTGGATCGGCTAGTGCTTCGGGTTTTGGGTCATCAACA TCAATTTTTGGCTCCTCGTCTGCTCAGAATACTGCCTCAGCATTTGGTCCTAGCTTAAGC TTTGGTAACACCCAATCATCACCGTTATTCCAATCAACTACCCCTTCATTCGGACAGACG AACTCGGCCTTTGGACAGACCACATCATCTTTTGCCCAGACTACACCAGCTTTTGGTCAA TCCAATTTGTTTAGTACACCTTCTACTGGCTTTGGTAGTAATCTGTTTTCAAGTGCACCA CTGCTAAATACAAGCAGTACAATGGGATTTGGCCAAACAACGCCCTCTCTATCAACTCCT TTTCAACTGACTCAGCCTTCTCATAGTTCTGCTTTTGGGTTCAATAACTTTGGTCAGACA CAAGGAGCTGCTGCAAGTGGTTTTGGTGGCACTCCCAGCCTTTTCAGTCAGCCGCCAGCT ATCCAAAGCTCAGTTGTCGCACAACCTTCAGTTGTTACTAATCCATTTGGAACTTTACCA GCGATGCCTCAGATGTCAATTGGTCGTACTGGCACTTCTTCTTCTATACAGTATGGGATT TCTAGTTTACCGGTGGTTGACAAACCTGTTCCTGTCCGGATATCATCATTACTAACTTCT CGACACATTTCTCAAAGACGGGTTAGGTTGCCGGCAAGGAAATATCATCCTAAAACTGAG GGGACTAAGGTACCGTTCTTTAGTGATGATGATGAAACACCAAGCACACCTAAGGCAGAT GCATTGTTTGTTCCCAGAGAGAATCCAAGAGCTTTAGTAATTCGTCCAGTGGACCAGTGG CCTTCGAGAGGTGGTGTGGAGAAAGTATCACCATCAAAGCACATGTCTATCCCAGCGCAT GAGAATGGTAAAACTGCTGAAGTTGTTTGTGCTCCAGTTAACGAGGCCAGTGCAAAAGAT AAAAACAAAGATCCGGTTGAGAATGGCCTTGATAAAGAGGGCCTCGATAGTACCAAACTG AACCAGAAACCTAATGGTCTCCACGAAGGGCAACATCTCCGAAAAGGAGGAGGGTCTTCC ATTACCCTTACTGGCCATCGAGCTGGTGAGGCAGCAATTGTTTATGAACATGGGGCTGAC ATTGAGGCTCTGATGCCAAAGCTCTGCCATTCCGATTATTACACAGAACCACGGATTCAG GAATTGGCAGCCAAAGAAAGAGCTGAACCTGGCTTCTGTCGCCGTGTGAAGGATTTTGTG GTTGGAAGACATGGGTACGGTAGCATCAAGTTCATAGGGGAAACAGATGTCCGTCGTCTT GATCTTGAGTCTCTTATCCAGTTTAACAATCGGGAGGTGATAGTCTATATGGATGAAAGT AAGAAACCTCCTGTCGGCCAAGGTCTTAACAAGCCTGCTGAGGTGACACTTCTCAACATA AAATGTTTCGATAAGAAGACCGGACAACAGTATACAGAGGGTCCTAGAATCGAGAAATAT AAAGAAATGCTTAAGAGGAAGGCAGGAGATCAAGGTGCTGAATTCGTGTCATATGATTCC GTCAAAGGAGAATGGAAGTTCAAGGTGCAGCATTTCAGCAAATATTGGCTTCATGAAGAC AACGAAGATGAATATAGCGAATATTTTGATGCCTAGCTGCAGCCGGCAAGAAGAAAGACT AGCTTAATTTCTGGTATACAGCTACTTCATGTAAAGAACCCACTAGCTCATTTGTGGAAT ATGGGTTGTGTAGTTCCCCCCTTTTTTTTCAGTTTTTGTTGTGGATCTCGTTTTTTTCCC CGTTGTATTTGTTTGCTTTTTCTGGTCTTTTTATGTCATTATATCTGTTGTTTCAAGAAG TGCAGTTTTTTTCATTCGGAGATTTTGAATTGAGGAATCTACGCTCATCTTTTTATATGC TT