Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g005910.3.1
CDS Infomation

NSP-interacting kinase 2 (AHRD V3.3 *** AT3G25560.1)
Sequence

ATGAAGGCTATTTTGGGTTATTTCTACTTATTCAACCTCTTGGCTTATTATGCTCATGCT
ATGCTTACTCCAGCTGGTGTCAATTATGAAGTGCAAGCTTTAATGGAGATAAAGAAGAAT
TTAAATGATCCATATAATGTTTTAAATTGGGATGGAGATGCTGTTGATCCTTGTAGCTGG
AATATGATCACTTGTTCAAATGATAAATTTGTCACTAGCCTGGAAAGTCCTAGCCAAAAT
TTGTCTGGCAAAATATCACCATATATCCACAACTTAACACACCTTGAACTTATACTACTA
CAGAGCAATAATATATCAGGATCAATACCTATGGAGCTTGGAATGCTTAAAAAACTTAAA
ACAATTGATCTTTCTGATAACAAGTTAACCGGCGAAATCCCGGCATCTTTAGCTCAGCTC
AAAAACCTTCAATATTTGAGATTAAACAACAATAGTCTAAGTGGAGCTATTCCTTTGGAC
TTGGCCAATATGACTCAGCTTTCACTTATGGACTTGTCTTTCAACAATCTCAGTGGTCCT
GTACCAAGGCTTCTAGCCAAAACATTCAATGTTTTGGGAAATCCAATGATATGTGCAACT
GGAAAAGAGAAAGAGTGCAACGGAACAACACCAATGCCCCTCTCCTTCTCTTCAAACAAT
CCACAGAATGTTCAGTCTTCTGGAAAACCGAAGACTCATAAGGTTGCGTTAGCGTTTGGA
ACAAGTCTAGGATGCATCTTCCTACTAATTGTTGGTTTTGGATTCTTTCTGTGGTGGAGA
CAAAAGCACAATAAGCAAATTTTCTTTGACAGTAATGAACATCATATTGAAGAAGTGTGC
TTAGGTAACTTAAGGAGGTTTCAATTCAAGGAGCTTCAGTCTGCTACAAACAATTTCAGC
AGCAAGAACATACTAGGAAAAGGTGGTTTTGGTAATGTTTATAAAGGTCGTCTTAGTGAC
GGGGTTATTGTAGCTGTGAAAAGGCTCAAAGATGGAAATGCAGTTGGAGGTAATCAACAA
TTTCAGACTGAAGTCGCGTTGATCAGCCTGGCAGTTCATCGGAATCTCCTCAGGTTGTAT
GGATTTTGTATGACACCAACTGAAAGGTTGCTGGTGTACCCTTACATGTCTAATGGAAGT
GTAGCTTCGCGTCTCAAAGCCAAACCAACCTTGGATTGGGGTACAAGAAAAGGAATAGCT
TTGGGAGCTGCTAGAGGCTTATTATATCTACACGAACAATGTGATCCGAAGATCATTCAT
AGGGATGTAAAAGCTGCAAATATATTGCTTGATGATTACTGTGAAGCTGTTGTTGGAGAT
TTCGGATTAGCAAAGCTTTTGGATCATCATGATTCACATGTCACAACCGCGGTTAGAGGA
ACTGTAGGACATATAGCTCCGGAATATCTCTCTACAGGACAGTCCTCTGATAAGACGGAC
GTTTTTGGTTTTGGTATTCTCTTGCTAGAATTGATCACTGGAGAAAGAGCTCTGGAATTT
GGTAAAGCAGCAAACCAAAAAGGTGCCATGCTTGATTGGGTAAGAAAGATTCAACAAGAG
AAAAGGCTAGACATGTTGGTGGATAAAGACATGAAAAACGAGTACGATACGATAGAGTTA
GAGGAAATGGTACAAGTAGCATTACTATGTACTCAGTATCATCCAAGTCATAGACCTAAA
ATGTCTGAAGTTGTAAGAATGCTCGAAGGAGATGGACTAGCAGAGAAATGGGAAGCATCT
CAAACAGCAGAACCAACAAGATACAGCAGAGCAAATGAATTTTCTTCTTCAGAAAGATAC
TCTGATCTTACTGATGATTCTTCATTGCTTGTACAAGCAATGGAACTATCTGGTCCAAGA
TGA

Peptide Sequence

PEP ID

Solyc04g005910.3.1
PEP Infomation

NSP-interacting kinase 2 (AHRD V3.3 *** AT3G25560.1)
Sequence

MKAILGYFYLFNLLAYYAHAMLTPAGVNYEVQALMEIKKNLNDPYNVLNWDGDAVDPCSW
NMITCSNDKFVTSLESPSQNLSGKISPYIHNLTHLELILLQSNNISGSIPMELGMLKKLK
TIDLSDNKLTGEIPASLAQLKNLQYLRLNNNSLSGAIPLDLANMTQLSLMDLSFNNLSGP
VPRLLAKTFNVLGNPMICATGKEKECNGTTPMPLSFSSNNPQNVQSSGKPKTHKVALAFG
TSLGCIFLLIVGFGFFLWWRQKHNKQIFFDSNEHHIEEVCLGNLRRFQFKELQSATNNFS
SKNILGKGGFGNVYKGRLSDGVIVAVKRLKDGNAVGGNQQFQTEVALISLAVHRNLLRLY
GFCMTPTERLLVYPYMSNGSVASRLKAKPTLDWGTRKGIALGAARGLLYLHEQCDPKIIH
RDVKAANILLDDYCEAVVGDFGLAKLLDHHDSHVTTAVRGTVGHIAPEYLSTGQSSDKTD
VFGFGILLLELITGERALEFGKAANQKGAMLDWVRKIQQEKRLDMLVDKDMKNEYDTIEL
EEMVQVALLCTQYHPSHRPKMSEVVRMLEGDGLAEKWEASQTAEPTRYSRANEFSSSERY
SDLTDDSSLLVQAMELSGPR*

Transcript Sequence

Transcript ID

Solyc04g005910.3.1
Transcript Infomation

NSP-interacting kinase 2 (AHRD V3.3 *** AT3G25560.1)
Sequence

TATATATATATATTTTGTTGAACAAAAGTGTCATGCATGTTATATGGCTCTAACTTTTAA
CTACTATGAAAGTGAATTTGTTGTTACATATGAGAAATTGTACTAGACATGTTTATGTGT
TTATTGTAGTGTAGAGTAAACTTGGTTGAAATTCATAATCAAATATTTTCTCTATTTTTT
TTTATAACAATATTAAAAATCTCATTTTGTATTGTGGGTAGTTCTTTTCTTGGAATTCTT
GAATTAGTAAAAGCAAGAAAAATGAAGGCTATTTTGGGTTATTTCTACTTATTCAACCTC
TTGGCTTATTATGCTCATGCTATGCTTACTCCAGCTGGTGTCAATTATGAAGTGCAAGCT
TTAATGGAGATAAAGAAGAATTTAAATGATCCATATAATGTTTTAAATTGGGATGGAGAT
GCTGTTGATCCTTGTAGCTGGAATATGATCACTTGTTCAAATGATAAATTTGTCACTAGC
CTGGAAAGTCCTAGCCAAAATTTGTCTGGCAAAATATCACCATATATCCACAACTTAACA
CACCTTGAACTTATACTACTACAGAGCAATAATATATCAGGATCAATACCTATGGAGCTT
GGAATGCTTAAAAAACTTAAAACAATTGATCTTTCTGATAACAAGTTAACCGGCGAAATC
CCGGCATCTTTAGCTCAGCTCAAAAACCTTCAATATTTGAGATTAAACAACAATAGTCTA
AGTGGAGCTATTCCTTTGGACTTGGCCAATATGACTCAGCTTTCACTTATGGACTTGTCT
TTCAACAATCTCAGTGGTCCTGTACCAAGGCTTCTAGCCAAAACATTCAATGTTTTGGGA
AATCCAATGATATGTGCAACTGGAAAAGAGAAAGAGTGCAACGGAACAACACCAATGCCC
CTCTCCTTCTCTTCAAACAATCCACAGAATGTTCAGTCTTCTGGAAAACCGAAGACTCAT
AAGGTTGCGTTAGCGTTTGGAACAAGTCTAGGATGCATCTTCCTACTAATTGTTGGTTTT
GGATTCTTTCTGTGGTGGAGACAAAAGCACAATAAGCAAATTTTCTTTGACAGTAATGAA
CATCATATTGAAGAAGTGTGCTTAGGTAACTTAAGGAGGTTTCAATTCAAGGAGCTTCAG
TCTGCTACAAACAATTTCAGCAGCAAGAACATACTAGGAAAAGGTGGTTTTGGTAATGTT
TATAAAGGTCGTCTTAGTGACGGGGTTATTGTAGCTGTGAAAAGGCTCAAAGATGGAAAT
GCAGTTGGAGGTAATCAACAATTTCAGACTGAAGTCGCGTTGATCAGCCTGGCAGTTCAT
CGGAATCTCCTCAGGTTGTATGGATTTTGTATGACACCAACTGAAAGGTTGCTGGTGTAC
CCTTACATGTCTAATGGAAGTGTAGCTTCGCGTCTCAAAGCCAAACCAACCTTGGATTGG
GGTACAAGAAAAGGAATAGCTTTGGGAGCTGCTAGAGGCTTATTATATCTACACGAACAA
TGTGATCCGAAGATCATTCATAGGGATGTAAAAGCTGCAAATATATTGCTTGATGATTAC
TGTGAAGCTGTTGTTGGAGATTTCGGATTAGCAAAGCTTTTGGATCATCATGATTCACAT
GTCACAACCGCGGTTAGAGGAACTGTAGGACATATAGCTCCGGAATATCTCTCTACAGGA
CAGTCCTCTGATAAGACGGACGTTTTTGGTTTTGGTATTCTCTTGCTAGAATTGATCACT
GGAGAAAGAGCTCTGGAATTTGGTAAAGCAGCAAACCAAAAAGGTGCCATGCTTGATTGG
GTAAGAAAGATTCAACAAGAGAAAAGGCTAGACATGTTGGTGGATAAAGACATGAAAAAC
GAGTACGATACGATAGAGTTAGAGGAAATGGTACAAGTAGCATTACTATGTACTCAGTAT
CATCCAAGTCATAGACCTAAAATGTCTGAAGTTGTAAGAATGCTCGAAGGAGATGGACTA
GCAGAGAAATGGGAAGCATCTCAAACAGCAGAACCAACAAGATACAGCAGAGCAAATGAA
TTTTCTTCTTCAGAAAGATACTCTGATCTTACTGATGATTCTTCATTGCTTGTACAAGCA
ATGGAACTATCTGGTCCAAGATGATAAGACACAATGTCA