Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g005880.1.1
CDS Infomation

LOW QUALITY:F-box family protein (AHRD V3.3 *** B9HWR1_POPTR)
Sequence

ATGAGTCGATGTGGTAGAAGAATGGTATCAAGTGATCAAAGTAAGTCTATTATTTGTGAC
TTACCAATTGATATACAGCATAGAATACTAGAACTTATGCCGATTAAATATGCTGCGAGA
ACGAGCATCTTATCAAAGCAATGGAGTCAGTTATGGTACACACTGCCACATCTGTTGTTT
GATCATATGTTTTTCCAGCATGTATCTAATTACGCTGGTGGAATAATCCGTAAGATTCTA
ATGCAACATACTGGACCTATTTTGGGATTTCATCTCGTCTCTGAGACACGCAAACTATCT
CAGTCGTATGTGGATCGATGCATCGTGTTAGTAGCAAATCATGTTATTCAGAAGCTCACT
CTTGATATGGCAAATGATGAATTATATACGTTGCCTGTTAGCGTATTTACTTGTGCAGCG
TTGACACATTTGAAGTTATCGAGGTGTATTGTTAAGTTTCCTGATAGTAACCGATTTCCT
AAACTTGTTGGTCTTCAGTTAGAAGAAGTTGAAATTGACAGGCCAAAACAGACTACTCTT
ATTCTGCCAATGCTTGAGACGTTGGAGTTGAAATATTGTGATGATGTTGATTATGTTCGT
ATTGTTTCTCTGAAGCTTGTGAACTTGTCTGTGCTTAGTACCTATGCAATAACATTTCAG
TGTTTTAATGTGAACCCGATATTTAGAAAGATTAAGCACCTCTGTTTGGATGGATCATCC
TTAAAGAAATTAGGGTCGGTTTGTCCGTCAGATAGGCTTGACGTATCTCTAAACTTGCAA
AGCCTGAAGATTTGTGATTTGAAGATTTCTGTTAAACGTATTATGTGTGCACTTTGCCTA
CTGCGGAATTCTCCTAACCTTGTTGAACTTGACATAGATGAAGTTGTAAAGGTTGATAAA
ACAGTGTATCACACAATAGAACTGTTTGATTACTTGTCTAAAGCAGAAAAAAAAGTGAGT
GAAGCTCTGAAGCTGATTCGAACAGTGAGGATAGGTAAATTCAAGGGTACAGTTACTGAA
ATGTACTTGGTACAAGTCATCCTAGCTCATTCTTCGAAGCTTGAGAGGATGATCGTTCAA
CAGAAAATGCAAAAATTTGAGAGGTCTGATGAAATTTTGAAGGAGTTGAAATGCTACCAT
CGAGCATCACCAAGTGCAGAAATCAAGTACTCTAAGACTGATTCAAGTGCGTGTTAA

Peptide Sequence

PEP ID

Solyc04g005880.1.1
PEP Infomation

LOW QUALITY:F-box family protein (AHRD V3.3 *** B9HWR1_POPTR)
Sequence

MSRCGRRMVSSDQSKSIICDLPIDIQHRILELMPIKYAARTSILSKQWSQLWYTLPHLLF
DHMFFQHVSNYAGGIIRKILMQHTGPILGFHLVSETRKLSQSYVDRCIVLVANHVIQKLT
LDMANDELYTLPVSVFTCAALTHLKLSRCIVKFPDSNRFPKLVGLQLEEVEIDRPKQTTL
ILPMLETLELKYCDDVDYVRIVSLKLVNLSVLSTYAITFQCFNVNPIFRKIKHLCLDGSS
LKKLGSVCPSDRLDVSLNLQSLKICDLKISVKRIMCALCLLRNSPNLVELDIDEVVKVDK
TVYHTIELFDYLSKAEKKVSEALKLIRTVRIGKFKGTVTEMYLVQVILAHSSKLERMIVQ
QKMQKFERSDEILKELKCYHRASPSAEIKYSKTDSSAC*

Transcript Sequence

Transcript ID

Solyc04g005880.1.1
Transcript Infomation

LOW QUALITY:F-box family protein (AHRD V3.3 *** B9HWR1_POPTR)
Sequence

ATGAGTCGATGTGGTAGAAGAATGGTATCAAGTGATCAAAGTAAGTCTATTATTTGTGAC
TTACCAATTGATATACAGCATAGAATACTAGAACTTATGCCGATTAAATATGCTGCGAGA
ACGAGCATCTTATCAAAGCAATGGAGTCAGTTATGGTACACACTGCCACATCTGTTGTTT
GATCATATGTTTTTCCAGCATGTATCTAATTACGCTGGTGGAATAATCCGTAAGATTCTA
ATGCAACATACTGGACCTATTTTGGGATTTCATCTCGTCTCTGAGACACGCAAACTATCT
CAGTCGTATGTGGATCGATGCATCGTGTTAGTAGCAAATCATGTTATTCAGAAGCTCACT
CTTGATATGGCAAATGATGAATTATATACGTTGCCTGTTAGCGTATTTACTTGTGCAGCG
TTGACACATTTGAAGTTATCGAGGTGTATTGTTAAGTTTCCTGATAGTAACCGATTTCCT
AAACTTGTTGGTCTTCAGTTAGAAGAAGTTGAAATTGACAGGCCAAAACAGACTACTCTT
ATTCTGCCAATGCTTGAGACGTTGGAGTTGAAATATTGTGATGATGTTGATTATGTTCGT
ATTGTTTCTCTGAAGCTTGTGAACTTGTCTGTGCTTAGTACCTATGCAATAACATTTCAG
TGTTTTAATGTGAACCCGATATTTAGAAAGATTAAGCACCTCTGTTTGGATGGATCATCC
TTAAAGAAATTAGGGTCGGTTTGTCCGTCAGATAGGCTTGACGTATCTCTAAACTTGCAA
AGCCTGAAGATTTGTGATTTGAAGATTTCTGTTAAACGTATTATGTGTGCACTTTGCCTA
CTGCGGAATTCTCCTAACCTTGTTGAACTTGACATAGATGAAGTTGTAAAGGTTGATAAA
ACAGTGTATCACACAATAGAACTGTTTGATTACTTGTCTAAAGCAGAAAAAAAAGTGAGT
GAAGCTCTGAAGCTGATTCGAACAGTGAGGATAGGTAAATTCAAGGGTACAGTTACTGAA
ATGTACTTGGTACAAGTCATCCTAGCTCATTCTTCGAAGCTTGAGAGGATGATCGTTCAA
CAGAAAATGCAAAAATTTGAGAGGTCTGATGAAATTTTGAAGGAGTTGAAATGCTACCAT
CGAGCATCACCAAGTGCAGAAATCAAGTACTCTAAGACTGATTCAAGTGCGTGTTAA