Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g005290.3.1
CDS Infomation

18S pre-ribosomal assembly protein gar2-like protein (AHRD V3.3 *-* AT2G03810.7)
Sequence

ATGACAGAAAATCCGGATGAAATGTTAACTCACTCAAATGGTTGCAAGGACTCCAAGTCT
TTAGTCTTGCCAACGAAAGATCTGCTTGATTCAAACGGTCGTGACAGCACTAAAGACTCT
TTGGCGTGTGAAAAAGAGAAGAACGAATTCTGGAATGTCCAGGAACTTGATGACTCTGTA
TTTATCGAAGATATTTCAAGAAGTAACAAACTTGAAAATAGAGCTTCACCTCTGAAAGAT
GATCCGGACGAAGCCCCGTCTCATTTAACTTCTTGCAAGAGAAATGGAAATCCTTTTGCA
TGTGATACAGCAGATAGAGATCACCCCTGGAGTATTCCCAAATTTGAGGACCCTATCATT
GTGAATTTCTTCGACGATAAAGAAAAGGAAACCGTAGTCTCTAGTACACAATTTACCTCT
CTTTCGGAGTTGTTTGGTGCAGACACTCATTTATACACCGATAAGGGTGTCCTGGAATTC
GAATTGCCTGAATCGACAATTTGCTACAAAGAGAATGACTATAACATTATGAAAGACATA
TGCATGGATGAGGGTGTACCTCTCATGGATAAAATTGTGACTGAAAGCAGGAAATATGAT
CAGCCTGACTCGTCTATTTCTCTAGCTGCTGACGAACATCAGCCTAGAATCACAAGGGAA
GGTGTCGACAGTGAATTGGTCTCATCTGGTGAGTCCAAAGCTTCATCAGTTGAAAGTGCC
GTCAAAATTTCTGTTGATCATCATACAACTAAAGAAGATGAGGGTAATAAATCACTTGTT
CCAAATGGTATAAACCCCTTCTTGGAAGATAATATGAGCAAAGATGCTGAAAAGGACCCT
TATCTGGATGTGATGAAGATTTTTGGATCAAAAGATACTACAATGGCAAAACCTACGAAC
ATATCAGAAAAAGAATCCGACAGTCAGAATTTTAAAGAATCGAACTCTGATGCTGATCAG
TCAGCACAGCAGGCTAATCAGATGCCTACTTCGGTAGAAGCTTTCAACAGCCAATATACA
GTCTCGCCAGCTGATGGAACAAACAACTATGGACCAGGTAGCAACTTCTCTAACAATAGC
AAGTCGAAATCTGGAGCTATTACTTGCGACTTCAACTTGACTGAGCTGGCTTTAAGTAGC
AGCGTAACGAAAAGTGACAAACACTTGCCAGAACAATCCCATAAATTAGAGGCCGTCTCC
GGTCAAAAGGATGGGAGTTCTGACAGCTTTTCAGCTGCTACTCAAGTTCATTTTGCCAAT
AGTGTAGACTCCAGCAATAGCAGTACTATTCACGCCGACCCCCCAAATGTGGCTAATCTC
GAGGAAAAGAACTCTAGTAGTATCCCCCTCGGTGTGCATGGTCATTTTGCAAATGGAGAG
GCAAGTTTTGGACCTGCATCTGGTTTGATTTCTTACTCAGGTCACATAGCACATTCGGGT
AACATCTCTCTTCGTTCAGATAGCAGCACAACCAGTGCCAGATCCTTCGCCTTCCCAGTA
TTACAATCTGAATGGAACAGTAGTCCAGTAAGAATGGCGAAGGCAGAACGGAGACATTAT
AAGGGTTGGAGGCAAAGCCTTCTCTGTTGTAAATTCTAA

Peptide Sequence

PEP ID

Solyc04g005290.3.1
PEP Infomation

18S pre-ribosomal assembly protein gar2-like protein (AHRD V3.3 *-* AT2G03810.7)
Sequence

MTENPDEMLTHSNGCKDSKSLVLPTKDLLDSNGRDSTKDSLACEKEKNEFWNVQELDDSV
FIEDISRSNKLENRASPLKDDPDEAPSHLTSCKRNGNPFACDTADRDHPWSIPKFEDPII
VNFFDDKEKETVVSSTQFTSLSELFGADTHLYTDKGVLEFELPESTICYKENDYNIMKDI
CMDEGVPLMDKIVTESRKYDQPDSSISLAADEHQPRITREGVDSELVSSGESKASSVESA
VKISVDHHTTKEDEGNKSLVPNGINPFLEDNMSKDAEKDPYLDVMKIFGSKDTTMAKPTN
ISEKESDSQNFKESNSDADQSAQQANQMPTSVEAFNSQYTVSPADGTNNYGPGSNFSNNS
KSKSGAITCDFNLTELALSSSVTKSDKHLPEQSHKLEAVSGQKDGSSDSFSAATQVHFAN
SVDSSNSSTIHADPPNVANLEEKNSSSIPLGVHGHFANGEASFGPASGLISYSGHIAHSG
NISLRSDSSTTSARSFAFPVLQSEWNSSPVRMAKAERRHYKGWRQSLLCCKF*

Transcript Sequence

Transcript ID

Solyc04g005290.3.1
Transcript Infomation

18S pre-ribosomal assembly protein gar2-like protein (AHRD V3.3 *-* AT2G03810.7)
Sequence

ATGACAGAAAATCCGGATGAAATGTTAACTCACTCAAATGGTTGCAAGGACTCCAAGTCT
TTAGTCTTGCCAACGAAAGATCTGCTTGATTCAAACGGTCGTGACAGCACTAAAGACTCT
TTGGCGTGTGAAAAAGAGAAGAACGAATTCTGGAATGTCCAGGAACTTGATGACTCTGTA
TTTATCGAAGATATTTCAAGAAGTAACAAACTTGAAAATAGAGCTTCACCTCTGAAAGAT
GATCCGGACGAAGCCCCGTCTCATTTAACTTCTTGCAAGAGAAATGGAAATCCTTTTGCA
TGTGATACAGCAGATAGAGATCACCCCTGGAGTATTCCCAAATTTGAGGACCCTATCATT
GTGAATTTCTTCGACGATAAAGAAAAGGAAACCGTAGTCTCTAGTACACAATTTACCTCT
CTTTCGGAGTTGTTTGGTGCAGACACTCATTTATACACCGATAAGGGTGTCCTGGAATTC
GAATTGCCTGAATCGACAATTTGCTACAAAGAGAATGACTATAACATTATGAAAGACATA
TGCATGGATGAGGGTGTACCTCTCATGGATAAAATTGTGACTGAAAGCAGGAAATATGAT
CAGCCTGACTCGTCTATTTCTCTAGCTGCTGACGAACATCAGCCTAGAATCACAAGGGAA
GGTGTCGACAGTGAATTGGTCTCATCTGGTGAGTCCAAAGCTTCATCAGTTGAAAGTGCC
GTCAAAATTTCTGTTGATCATCATACAACTAAAGAAGATGAGGGTAATAAATCACTTGTT
CCAAATGGTATAAACCCCTTCTTGGAAGATAATATGAGCAAAGATGCTGAAAAGGACCCT
TATCTGGATGTGATGAAGATTTTTGGATCAAAAGATACTACAATGGCAAAACCTACGAAC
ATATCAGAAAAAGAATCCGACAGTCAGAATTTTAAAGAATCGAACTCTGATGCTGATCAG
TCAGCACAGCAGGCTAATCAGATGCCTACTTCGGTAGAAGCTTTCAACAGCCAATATACA
GTCTCGCCAGCTGATGGAACAAACAACTATGGACCAGGTAGCAACTTCTCTAACAATAGC
AAGTCGAAATCTGGAGCTATTACTTGCGACTTCAACTTGACTGAGCTGGCTTTAAGTAGC
AGCGTAACGAAAAGTGACAAACACTTGCCAGAACAATCCCATAAATTAGAGGCCGTCTCC
GGTCAAAAGGATGGGAGTTCTGACAGCTTTTCAGCTGCTACTCAAGTTCATTTTGCCAAT
AGTGTAGACTCCAGCAATAGCAGTACTATTCACGCCGACCCCCCAAATGTGGCTAATCTC
GAGGAAAAGAACTCTAGTAGTATCCCCCTCGGTGTGCATGGTCATTTTGCAAATGGAGAG
GCAAGTTTTGGACCTGCATCTGGTTTGATTTCTTACTCAGGTCACATAGCACATTCGGGT
AACATCTCTCTTCGTTCAGATAGCAGCACAACCAGTGCCAGATCCTTCGCCTTCCCAGTA
TTACAATCTGAATGGAACAGTAGTCCAGTAAGAATGGCGAAGGCAGAACGGAGACATTAT
AAGGGTTGGAGGCAAAGCCTTCTCTGTTGTAAATTCTAAGTCCTTTTTGTTTCTTTTTGT
AGAGTTTTCAGTTCAAAAATATACATCATTTCATCATCCTTTGTTAGTTACAAGTTGATA
TTCTTAGGAATGAATCACATGTCATTGGTAATAGGTTCAAAGGGCTCTTTGAGTGTGTTA
TTATCTTAAAAAGTGAAGGCACTGAAATGTAGACTCAACCAACCCTTTGTTTTCCTTATA
TTGTGTGTTATCCTTCAATATAATCATTCATCAATAAAACGGCCTTTTATCATTATTTCG
AGACTCTCCTTTTAATACTAATGAAATAATATGAACTTTCTTGAGAC