Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc04g005050.1.1
CDS Infomation

matrix metalloproteinase
Sequence

ATGAGGATTCCTTTATTCATCGCCATACTTTTTGTTCTTAGTGTTCCATTTCCATCTTCA
GCTCATTTCTTCCCAAATATTTCTTCAATTCCTCCTAATTTATTGAAACCAAATGCCACT
GCCTGGGATGCTTTTAACAAGTTATTAGGATGCCATTCCGGTCAGACGGTCGACGGCTTA
GCGAAAATCAAAAAATATTTTCACTACTTTGGATACATTAATAATTCTTCCACTAACTTC
ACTGATGATTTTGATGATACTCTTGAATCTGCTCTCAAGACCTACCAGCTTAACTTCAAC
CTCAACACCACCGGTGTGCTCGACGCGAACACCATTCAGCATCTCATAAAACCCAGATGT
GGAAACGCTGATGTAGTTAACGGTACTAGTACTATGAACTCCGGTAAGCCACCGGCAGGT
TCTCCGACGATGCACACCGTAGCTCACTACTCCTTCTTTCCGGGAAGTCCACGGTGGCCG
GCGAACAAGAGAGATCTGACATATGCTTTTGCACCGCAGAATGGACTGACGGATGATATT
AAGATTGTGTTCACACGAGCGTTTGATAGGTGGTCGGAGGTGACTCCATTGACGTTTACT
GAAATAGCATCGTACCAATCGGCTGATATTAAGATCGGGTTTTTCAGCGGAGATCACAAC
GATGGAGAGCCGTTTGATGGTCCTATGGGGACATTAGCACACGCGTTTTCCCCACCGGCG
GGGCATTTTCACTTGGACGGCGAGGAGAACTGGGTGATCGACGGTGCGCCGATAGTTGAT
GGGAATTTCTTTTCTATATTGTCGGCGGTGGACCTTGAATCGGTTGCGGTTCATGAAATC
GGGCATTTATTGGGTTTGGGTCATTCATCCGTAGAAGATGCTATTATGTACCCGACTTTA
GGAGCGGGTACCCGAAGAGTCGAGCTTAGAAATGATGATATATTGGGAGTCCAGGAGTTA
TACGGGTCTAACCCGAATTATACTGGGCCAAACCCAAATTTGACTCCGAGCCAAGAGAGT
GACACAAATGGAGCCCCGATATTTGAGTTATCATGGTTTCATGGGTTTCTTGGTTTATTC
TTTGCTTTGTTCATTCAACTGTAG

Peptide Sequence

PEP ID

Solyc04g005050.1.1
PEP Infomation

matrix metalloproteinase
Sequence

MRIPLFIAILFVLSVPFPSSAHFFPNISSIPPNLLKPNATAWDAFNKLLGCHSGQTVDGL
AKIKKYFHYFGYINNSSTNFTDDFDDTLESALKTYQLNFNLNTTGVLDANTIQHLIKPRC
GNADVVNGTSTMNSGKPPAGSPTMHTVAHYSFFPGSPRWPANKRDLTYAFAPQNGLTDDI
KIVFTRAFDRWSEVTPLTFTEIASYQSADIKIGFFSGDHNDGEPFDGPMGTLAHAFSPPA
GHFHLDGEENWVIDGAPIVDGNFFSILSAVDLESVAVHEIGHLLGLGHSSVEDAIMYPTL
GAGTRRVELRNDDILGVQELYGSNPNYTGPNPNLTPSQESDTNGAPIFELSWFHGFLGLF
FALFIQL*

Transcript Sequence

Transcript ID

Solyc04g005050.1.1
Transcript Infomation

matrix metalloproteinase
Sequence

ATGAGGATTCCTTTATTCATCGCCATACTTTTTGTTCTTAGTGTTCCATTTCCATCTTCA
GCTCATTTCTTCCCAAATATTTCTTCAATTCCTCCTAATTTATTGAAACCAAATGCCACT
GCCTGGGATGCTTTTAACAAGTTATTAGGATGCCATTCCGGTCAGACGGTCGACGGCTTA
GCGAAAATCAAAAAATATTTTCACTACTTTGGATACATTAATAATTCTTCCACTAACTTC
ACTGATGATTTTGATGATACTCTTGAATCTGCTCTCAAGACCTACCAGCTTAACTTCAAC
CTCAACACCACCGGTGTGCTCGACGCGAACACCATTCAGCATCTCATAAAACCCAGATGT
GGAAACGCTGATGTAGTTAACGGTACTAGTACTATGAACTCCGGTAAGCCACCGGCAGGT
TCTCCGACGATGCACACCGTAGCTCACTACTCCTTCTTTCCGGGAAGTCCACGGTGGCCG
GCGAACAAGAGAGATCTGACATATGCTTTTGCACCGCAGAATGGACTGACGGATGATATT
AAGATTGTGTTCACACGAGCGTTTGATAGGTGGTCGGAGGTGACTCCATTGACGTTTACT
GAAATAGCATCGTACCAATCGGCTGATATTAAGATCGGGTTTTTCAGCGGAGATCACAAC
GATGGAGAGCCGTTTGATGGTCCTATGGGGACATTAGCACACGCGTTTTCCCCACCGGCG
GGGCATTTTCACTTGGACGGCGAGGAGAACTGGGTGATCGACGGTGCGCCGATAGTTGAT
GGGAATTTCTTTTCTATATTGTCGGCGGTGGACCTTGAATCGGTTGCGGTTCATGAAATC
GGGCATTTATTGGGTTTGGGTCATTCATCCGTAGAAGATGCTATTATGTACCCGACTTTA
GGAGCGGGTACCCGAAGAGTCGAGCTTAGAAATGATGATATATTGGGAGTCCAGGAGTTA
TACGGGTCTAACCCGAATTATACTGGGCCAAACCCAAATTTGACTCCGAGCCAAGAGAGT
GACACAAATGGAGCCCCGATATTTGAGTTATCATGGTTTCATGGGTTTCTTGGTTTATTC
TTTGCTTTGTTCATTCAACTGTAG