Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g123830.3.1
CDS Infomation

D-3-phosphoglycerate dehydrogenase (AHRD V3.3 *** K4BN81_SOLLC)
Sequence

ATGGCGTCCATCCCTTCTCCTCACACTGCCCGCCTCAATTCTCTCCTCTCTTCTTCTTCC
GTCAATCACAACAAACCTTCAAATCTCTCTTTCCTCCATGCCTCCTCAAATCCATCTTCC
ATCAAACTCCTTCACTCTGTTTCACCATCAATTTCTTCTTCTTCGACGACGGTGATTTGT
AATGTCCTCAAAACTGTTGAATCTGCTGACATCTCCCTCTCTAGAGATCTTCACGGCGTT
GTATCCACTTCCAAACCAACCATTCTCGTATCCGAGAAGCTTGGAGAGGCGGGTCTAGAT
TTGCTCAAGAGTTTCGGCAACGTGGATTGTTCTTACGACTTGTCTCCTCAGGATCTCTGC
GCTAAGATCTCTCTGTGCGACGCGCTCATCGTCCGTAGTGGTACCAAGGTGACCCGTGAC
GTGTTTGAGGCTGCTCAGGGAAGACTCAAGGTCGTGGGGAGAGCTGGTGTTGGTATAGAC
AATGTCGATCTGCAAGCTGCAACTGAATTTGGTTGCCTCGTCGTTAACGCACCCACAGCT
AATACTATTGCTGCAGCTGAGCATGGAATCGCTTTGCTCACCTCCATGGCCCGTAACGTT
GCTCAGTCTGATGCCTCCATGAAAGCTGGAAAATGGCTGCGCAGCAAGTATGTGGGTGTT
TCTCTTGTTGGGAAAACATTAGCTATTATGGGATTTGGTAAAGTTGGTTCCGAGGTTGCT
AGACGTGCAAAAGGCCTCGGTATGCATGTTATTGCCCATGATCCTTATGCTCCTGCTGAC
AGAGCTCGTGCTATTGGAGTCGATTTGGTTTCATTTGAGCAGGCCATATCTACTGCTGAC
TTCATCTCACTCCACATGCCTCTCACACCTGCTACGAACAAGGTATTCAATGATGACACT
TTTGCAAAGATGAAGAATGGAGTCAGACTAATAAACGTTGCTCGAGGAGGTGTTATCGAC
GAGGATGCATTAGTTAGAGCCCTTGACAGTGGAATAGTTGCTCAGGCAGCACTTGATGTG
TTTACTGTGGAGCCCCCACCAAAAGATAGCAAACTAGTGCAGCATGAGAATGTTACTGTT
ACACCTCATCTTGGAGCTAGCACTAAAGAAGCACAGGAAGGAGTTGCAATTGAAATAGCT
GAGGCTGTTGTTGGTGCTCTAAATGGGGAACTTTCTGCTACCGCTGTGAATGCTCCAATG
GTCCCTCCTGAGGTTTTGTCCGAGTTGGCTCCTTACGTCGTGCTCGCTGAGAAAGTGGGT
AGATTAGCAGTACAGCTAGTGACTGGTGGCAGTGGGATTCAGAGTGTGAAAGTGGTTTAC
AAATCGGCTAGGGACCCTGACAGCTTGGACACTAGACTTCTTCGAGCCATGGTTACAAAA
GGCATTATTGAGCCTATATCGGATACAATCATCAACCTTGTAAATGCGGATTTCAGTGCA
AAGCAGAAGGGTCTTCGCATTAGTGAAGAAAGGATTATTGTTGATTCATCTCCAGAGTAC
CCTGTTGAGTCAATCCAGGTGCAGATTAGTAATGTGCAATCAAGATTTGCAAGTGCGTTA
TCAGAGAATGGAAACATTAGCATTGAGGGTAGAGTGAAGTATGGAGTTCCCCATCTTACA
CGTGTTGGACCATTTAGCGTTGATGTGAGCTTGGAGGGTAACCTCATCCTTTGCAAACAA
GTGGATCAACCTGGTATGATAGGGAAAGTTGGGAACATACTTGGTGAGAGTAATGTGAAT
GTGAGTTTTATGAGTGTTGGGAGAACGGTGAAGGGAAAGCAGGCAATTATGGCAATTGGA
GTAGACGAAGAACCAGACAAGGATACTCAGAAGAAGATTGGAGAGGTGTCTGCAGTTGAA
GAATTTGTCTTCCTTAAACTATAG

Peptide Sequence

PEP ID

Solyc03g123830.3.1
PEP Infomation

D-3-phosphoglycerate dehydrogenase (AHRD V3.3 *** K4BN81_SOLLC)
Sequence

MASIPSPHTARLNSLLSSSSVNHNKPSNLSFLHASSNPSSIKLLHSVSPSISSSSTTVIC
NVLKTVESADISLSRDLHGVVSTSKPTILVSEKLGEAGLDLLKSFGNVDCSYDLSPQDLC
AKISLCDALIVRSGTKVTRDVFEAAQGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTA
NTIAAAEHGIALLTSMARNVAQSDASMKAGKWLRSKYVGVSLVGKTLAIMGFGKVGSEVA
RRAKGLGMHVIAHDPYAPADRARAIGVDLVSFEQAISTADFISLHMPLTPATNKVFNDDT
FAKMKNGVRLINVARGGVIDEDALVRALDSGIVAQAALDVFTVEPPPKDSKLVQHENVTV
TPHLGASTKEAQEGVAIEIAEAVVGALNGELSATAVNAPMVPPEVLSELAPYVVLAEKVG
RLAVQLVTGGSGIQSVKVVYKSARDPDSLDTRLLRAMVTKGIIEPISDTIINLVNADFSA
KQKGLRISEERIIVDSSPEYPVESIQVQISNVQSRFASALSENGNISIEGRVKYGVPHLT
RVGPFSVDVSLEGNLILCKQVDQPGMIGKVGNILGESNVNVSFMSVGRTVKGKQAIMAIG
VDEEPDKDTQKKIGEVSAVEEFVFLKL*

Transcript Sequence

Transcript ID

Solyc03g123830.3.1
Transcript Infomation

D-3-phosphoglycerate dehydrogenase (AHRD V3.3 *** K4BN81_SOLLC)
Sequence

GGGGTAGTCCATTAGTAAATTCACCATTCTATATAAAGGAACATGTTTTAGTTTCATTTT
GTGTCCAAACCCCTCAAAGCCTCCAACAACTTTTGAGTTTTGCAGTCAGTCTATTTGTTG
CTCTCATAAAAATGGCGTCCATCCCTTCTCCTCACACTGCCCGCCTCAATTCTCTCCTCT
CTTCTTCTTCCGTCAATCACAACAAACCTTCAAATCTCTCTTTCCTCCATGCCTCCTCAA
ATCCATCTTCCATCAAACTCCTTCACTCTGTTTCACCATCAATTTCTTCTTCTTCGACGA
CGGTGATTTGTAATGTCCTCAAAACTGTTGAATCTGCTGACATCTCCCTCTCTAGAGATC
TTCACGGCGTTGTATCCACTTCCAAACCAACCATTCTCGTATCCGAGAAGCTTGGAGAGG
CGGGTCTAGATTTGCTCAAGAGTTTCGGCAACGTGGATTGTTCTTACGACTTGTCTCCTC
AGGATCTCTGCGCTAAGATCTCTCTGTGCGACGCGCTCATCGTCCGTAGTGGTACCAAGG
TGACCCGTGACGTGTTTGAGGCTGCTCAGGGAAGACTCAAGGTCGTGGGGAGAGCTGGTG
TTGGTATAGACAATGTCGATCTGCAAGCTGCAACTGAATTTGGTTGCCTCGTCGTTAACG
CACCCACAGCTAATACTATTGCTGCAGCTGAGCATGGAATCGCTTTGCTCACCTCCATGG
CCCGTAACGTTGCTCAGTCTGATGCCTCCATGAAAGCTGGAAAATGGCTGCGCAGCAAGT
ATGTGGGTGTTTCTCTTGTTGGGAAAACATTAGCTATTATGGGATTTGGTAAAGTTGGTT
CCGAGGTTGCTAGACGTGCAAAAGGCCTCGGTATGCATGTTATTGCCCATGATCCTTATG
CTCCTGCTGACAGAGCTCGTGCTATTGGAGTCGATTTGGTTTCATTTGAGCAGGCCATAT
CTACTGCTGACTTCATCTCACTCCACATGCCTCTCACACCTGCTACGAACAAGGTATTCA
ATGATGACACTTTTGCAAAGATGAAGAATGGAGTCAGACTAATAAACGTTGCTCGAGGAG
GTGTTATCGACGAGGATGCATTAGTTAGAGCCCTTGACAGTGGAATAGTTGCTCAGGCAG
CACTTGATGTGTTTACTGTGGAGCCCCCACCAAAAGATAGCAAACTAGTGCAGCATGAGA
ATGTTACTGTTACACCTCATCTTGGAGCTAGCACTAAAGAAGCACAGGAAGGAGTTGCAA
TTGAAATAGCTGAGGCTGTTGTTGGTGCTCTAAATGGGGAACTTTCTGCTACCGCTGTGA
ATGCTCCAATGGTCCCTCCTGAGGTTTTGTCCGAGTTGGCTCCTTACGTCGTGCTCGCTG
AGAAAGTGGGTAGATTAGCAGTACAGCTAGTGACTGGTGGCAGTGGGATTCAGAGTGTGA
AAGTGGTTTACAAATCGGCTAGGGACCCTGACAGCTTGGACACTAGACTTCTTCGAGCCA
TGGTTACAAAAGGCATTATTGAGCCTATATCGGATACAATCATCAACCTTGTAAATGCGG
ATTTCAGTGCAAAGCAGAAGGGTCTTCGCATTAGTGAAGAAAGGATTATTGTTGATTCAT
CTCCAGAGTACCCTGTTGAGTCAATCCAGGTGCAGATTAGTAATGTGCAATCAAGATTTG
CAAGTGCGTTATCAGAGAATGGAAACATTAGCATTGAGGGTAGAGTGAAGTATGGAGTTC
CCCATCTTACACGTGTTGGACCATTTAGCGTTGATGTGAGCTTGGAGGGTAACCTCATCC
TTTGCAAACAAGTGGATCAACCTGGTATGATAGGGAAAGTTGGGAACATACTTGGTGAGA
GTAATGTGAATGTGAGTTTTATGAGTGTTGGGAGAACGGTGAAGGGAAAGCAGGCAATTA
TGGCAATTGGAGTAGACGAAGAACCAGACAAGGATACTCAGAAGAAGATTGGAGAGGTGT
CTGCAGTTGAAGAATTTGTCTTCCTTAAACTATAGTCAATATTGCTGGCTAATGGGATGG
AATGGAACTTGTTATTACGTATTATTATCAAGTAAAAGATAAAAAGGGTGTAATGAAATT
TTAGCTGTGTCTGCTTAATGTGTTGATCAAATTAATTTACAAGGAACACTTATCCTCAGT
CTTTTATGATGTGTGCTGATCCTGCTCTTCTACTCAGGTAAAACATAAAAATAAAGAAAT
ACTTTATCGCAAAGGTTATGGTGTTAGTTATCAGTGTAATACTTATTCCTATCTTCTCTT
AATAAAAGTAGTGTAGGGGCGGTCACCCAATTATGCCTTGTGCTTTTCTTCGAC