Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g123630.3.1
CDS Infomation

pectin methylesterase
Sequence

ATGACACGTGTTGAAGATTTTTTCAGCAAACAAATCGATTTTTGTAAAAGGAAGAAAAAA
ATCTACTTGGCCATTGTTGCCTCAGTCCTGCTGGTTGCTGCAGTAATCGGAGTAGTCGCC
GGAGTAAAATCTCATTCGAAAAACTCCGACGATCATGCAGACATAATGGCCATTTCGTCT
TCAGCCCATGCTATTGTAAAATCTGCGTGTAGCAACACTCTACACCCCGAACTGTGTTAC
TCTGCGATTGTCAATGTTTCTGATTTCTCAAAAAAAGTAACAAGCCAAAAAGATGTGATT
GAATTGTCCTTGAATATCACTGTCAAAGCCGTTCGACGCAACTACTATGCAGTCAAGGAA
CTCATCAAAACTAGAAAAGGTTTAACCCCACGAGAAAAGGTTGCGCTGCATGACTGCCTG
GAGACGATGGACGAGACACTCGACGAGCTCCACACTGCTGTAGAAGATCTGGAGCTATAT
CCCAACAAAAAATCATTGAAAGAACACGCGGAAGACCTGAAAACTCTAATAAGTTCCGCA
ATTACAAACCAGGAAACTTGCCTCGACGGTTTCTCTCACGATGAGGCCGATAAAAAGGTA
CGCAAGGTTTTGTTGAAAGGCCAAAAGCACGTGGAAAAAATGTGCAGCAATGCTTTAGCT
ATGATCTGTAACATGACCGATACCGACATTGCAAATGAGATGAAATTATCGGCCCCCGCC
AATAATAGGAAGTTAGTAGAGGATAACGGCGAGTGGCCGGAGTGGTTGTCCGCCGGCGAC
AGGAGGTTATTGCAGTCGTCGACGGTGACGCCAGATGTGGTTGTGGCGGCCGACGGAAGC
GGAGATTACAAAACGGTGTCAGAGGCGGTAGCAAAAGCGCCAGAGAAGAGTAGCAAGAGG
TATGTGATTAGGATAAAAGCTGGTGTTTACAGGGAAAACGTGGATGTGCCAAAGAAGAAG
ACGAATATTATGTTTATGGGAGATGGCAAAAGCAATACAATAATCACAGCAAGTAGGAAT
GTGCAAGATGGTAGCACTACCTTCCACTCTGCTACAGTTGCCGCGGTGGGGGAAAAGTTC
TTGGCCCGGGATATAACCTTCCAAAACACAGCAGGAGCCTCGAAGCATCAAGCCGTGGCA
CTTCGCGTGGGCTCTGATTTGTCCGCATTTTATAGATGTGACATGTTGGCTTATCAGGAC
ACCCTCTACGTCCACTCTAATCGTCAATTCTTTGTACAATGTTTAGTCGCTGGTACCGTT
GATTTTATATTCGGGAATGGTGCTGCTGTTTTTCAAGACTGTGATATTCACGCCAGGCGT
CCTGGTTCGGGCCAGAAGAACATGGTTACTGCTCAAGGAAGAACTGACCCTAACCAGAAT
ACTGGTATTGTTATCCAGAAATGTAGAATTGGTGCAACGTCTGATTTGAGACCGGTGCAG
AAGAGTTTCCCTACATATCTAGGAAGGCCGTGGAAAGAATATTCGAGGACAGTGATCATG
CAATCGTCGATTACTGATGTGATCCAGCCTGCTGGATGGCATGAATGGAATGGGAATTTT
GCATTGGATACTCTGTTTTATGGGGAGTATGCAAATACAGGGGCAGGAGCACCGACGTCA
GGAAGAGTTAAATGGAAAGGGCACAAGGTAATTACAAGTTCAACTGAGGCCCAAGCTTAT
ACTCCTGGCAGGTTCATTGCTGGAGGTAGTTGGTTGAGCTCCACAGGCTTCCCTTTTTCT
CTTGGTCTTTAA

Peptide Sequence

PEP ID

Solyc03g123630.3.1
PEP Infomation

pectin methylesterase
Sequence

MTRVEDFFSKQIDFCKRKKKIYLAIVASVLLVAAVIGVVAGVKSHSKNSDDHADIMAISS
SAHAIVKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKE
LIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHAEDLKTLISSA
ITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMICNMTDTDIANEMKLSAPA
NNRKLVEDNGEWPEWLSAGDRRLLQSSTVTPDVVVAADGSGDYKTVSEAVAKAPEKSSKR
YVIRIKAGVYRENVDVPKKKTNIMFMGDGKSNTIITASRNVQDGSTTFHSATVAAVGEKF
LARDITFQNTAGASKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFFVQCLVAGTV
DFIFGNGAAVFQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLRPVQ
KSFPTYLGRPWKEYSRTVIMQSSITDVIQPAGWHEWNGNFALDTLFYGEYANTGAGAPTS
GRVKWKGHKVITSSTEAQAYTPGRFIAGGSWLSSTGFPFSLGL*

Transcript Sequence

Transcript ID

Solyc03g123630.3.1
Transcript Infomation

pectin methylesterase
Sequence

TATATATAAAAACATAAAATTTAAAGTAAAAACAAAAATAGAACGTTGAAATTAGGACCA
ATGTCACGGATATAAAACCCCCACCAATCCGATCCAATTTCTCCACAACTCTCCCTTAAA
TTTCTTCATCCAAAATGACACGTGTTGAAGATTTTTTCAGCAAACAAATCGATTTTTGTA
AAAGGAAGAAAAAAATCTACTTGGCCATTGTTGCCTCAGTCCTGCTGGTTGCTGCAGTAA
TCGGAGTAGTCGCCGGAGTAAAATCTCATTCGAAAAACTCCGACGATCATGCAGACATAA
TGGCCATTTCGTCTTCAGCCCATGCTATTGTAAAATCTGCGTGTAGCAACACTCTACACC
CCGAACTGTGTTACTCTGCGATTGTCAATGTTTCTGATTTCTCAAAAAAAGTAACAAGCC
AAAAAGATGTGATTGAATTGTCCTTGAATATCACTGTCAAAGCCGTTCGACGCAACTACT
ATGCAGTCAAGGAACTCATCAAAACTAGAAAAGGTTTAACCCCACGAGAAAAGGTTGCGC
TGCATGACTGCCTGGAGACGATGGACGAGACACTCGACGAGCTCCACACTGCTGTAGAAG
ATCTGGAGCTATATCCCAACAAAAAATCATTGAAAGAACACGCGGAAGACCTGAAAACTC
TAATAAGTTCCGCAATTACAAACCAGGAAACTTGCCTCGACGGTTTCTCTCACGATGAGG
CCGATAAAAAGGTACGCAAGGTTTTGTTGAAAGGCCAAAAGCACGTGGAAAAAATGTGCA
GCAATGCTTTAGCTATGATCTGTAACATGACCGATACCGACATTGCAAATGAGATGAAAT
TATCGGCCCCCGCCAATAATAGGAAGTTAGTAGAGGATAACGGCGAGTGGCCGGAGTGGT
TGTCCGCCGGCGACAGGAGGTTATTGCAGTCGTCGACGGTGACGCCAGATGTGGTTGTGG
CGGCCGACGGAAGCGGAGATTACAAAACGGTGTCAGAGGCGGTAGCAAAAGCGCCAGAGA
AGAGTAGCAAGAGGTATGTGATTAGGATAAAAGCTGGTGTTTACAGGGAAAACGTGGATG
TGCCAAAGAAGAAGACGAATATTATGTTTATGGGAGATGGCAAAAGCAATACAATAATCA
CAGCAAGTAGGAATGTGCAAGATGGTAGCACTACCTTCCACTCTGCTACAGTTGCCGCGG
TGGGGGAAAAGTTCTTGGCCCGGGATATAACCTTCCAAAACACAGCAGGAGCCTCGAAGC
ATCAAGCCGTGGCACTTCGCGTGGGCTCTGATTTGTCCGCATTTTATAGATGTGACATGT
TGGCTTATCAGGACACCCTCTACGTCCACTCTAATCGTCAATTCTTTGTACAATGTTTAG
TCGCTGGTACCGTTGATTTTATATTCGGGAATGGTGCTGCTGTTTTTCAAGACTGTGATA
TTCACGCCAGGCGTCCTGGTTCGGGCCAGAAGAACATGGTTACTGCTCAAGGAAGAACTG
ACCCTAACCAGAATACTGGTATTGTTATCCAGAAATGTAGAATTGGTGCAACGTCTGATT
TGAGACCGGTGCAGAAGAGTTTCCCTACATATCTAGGAAGGCCGTGGAAAGAATATTCGA
GGACAGTGATCATGCAATCGTCGATTACTGATGTGATCCAGCCTGCTGGATGGCATGAAT
GGAATGGGAATTTTGCATTGGATACTCTGTTTTATGGGGAGTATGCAAATACAGGGGCAG
GAGCACCGACGTCAGGAAGAGTTAAATGGAAAGGGCACAAGGTAATTACAAGTTCAACTG
AGGCCCAAGCTTATACTCCTGGCAGGTTCATTGCTGGAGGTAGTTGGTTGAGCTCCACAG
GCTTCCCTTTTTCTCTTGGTCTTTAAAACTAAAAATAAACACGAGCGAGTTTCAATTATT
TGGAGACCTAAGTGTGCAGGGCCTTGGCATTTAAATAACAAGATCCTTTCACGAATTTCC
CTGTCTTGTCAACTTCTATTCGTGCTGAGGAATTTTAAGTAATGTACATGTTAATATTAA
CTATTGTGTGCAATATTTATCTCATGCGAAAACCAAAAGAATATAAAAAAAAAAAATAGA
ATTTCCAAAATTCTATATGCTTATACTTGGCCTATATCCGATGACTTGTGGCTGTCGGTT
TATTCGTTATTCTTCCCTTAACCTCAAGTAATAATAAATAATATCTTAAGAGATTAGTAT
GTATTAATCATAAGATACAAGTAAAATAGGAGATTCATTTTATAA