Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g123620.4.1
CDS Infomation

Pectinesterase (AHRD V1 ***- B9GXZ7_POPTR)
Sequence

ATGGATACGATGAAATCTTTCAAAGGCTATGGCAAAGTGGACGAGTTGGAAGAAGAAGCT
TTCAGGAAGAAAACCCGCAAGCGTCTAATCATCTTAATCGTCTCTGCCGTTCTTCTCCTT
ATTGCAGTTGTAGGCATAGTTGTTGGAACTGTTGTTCACAAAAACAACGATTCGAAACAA
CCCTCTTCTACTGCTCAATCTCTGCAAGTTCTCTGTAGCTTAACTGAGTACAAAGATTCG
TGCTTATCAAGCTTATCATCCTCAAATGTCACTGATCCAGAAACGTTGTTCGTACTTTCT
TTGAAAATCGCCATGGATGCGGTCAAAAAATTGTCTTCTGGACCACAGAATTGGGCGAAA
TTGACTAAAGAACCCAAAGTACAAAAGGCATTGGAAGTCTGCGAGACTGTATTCGACGAT
GCAATTGATAAACTTGACGACTCTGTTTCGTCAGTGCAAGTGAACGGAGGCGCAAAACTG
CTTTCAGGACCTAAAATCGACGATCTCAGAACTTGGTTGAGCTCGACGCTTACAGATCAG
GAGACTTGCTTGGATGCACTCGAAGAAATCAATGCCACATTCGTGAACGACGCTAAGCTG
TTAATGAAAAATTCGACTGAATTTACCAGCAACAGTTTAGCTATTGTGGCTAACATTTTT
GGGATTCTAGGTAAATTCAATATTCCGATTCACCGGAAATTGTTGAACATTGGAGAATTC
CCGGAATGGGTGGCAGCAGGTGACCGGAGACTAATGCAGGAGGTTAATCCTACCCCGGAC
GTGACAGTGGCGAGTGATGGTTCAGGAAATGTTACGACTATTGGAGAAGCAGTGAAAATG
GTGCCGAAAAAGAGCAAAACGAGATTCGTGATACATGTGAAGGAAGGTGAATATGTGGAG
ACAGTGAGAATGGATAAGTCGCTTTGGAATGTCATGATGTACGGCGATGGCAAAACTAAG
ACCATTATTTCCGGAAGCTTGAACTTCATCGATGGAACTCCCACTTTTGAGACGGCCACA
TTTGCTGTTGCTGGTAGAGGCTTCATTGCCAGAGACATAACATTCAGGAACACAGCTGGC
GCGGCAAAGCACCAGGCAGTGGCCATGCGTTCGGGGTCCGATCAATCTGTATTTTATCGA
TGTTCGTTTGATGCCTTCCAGGACACCCTCTATGCTCACTCCAACCGTCAATTTTACCGA
GAATGTGACATTACAGGTACAATCGATTTCATGTTTGGTAACGCTGCGGTTGTTTTCCAA
AGTTGTAAAATCCAGCCGAGACAACCATTAGCCAATCAGTTTGTGACCATTACGGCCCAA
GGCAAAAAAGATCCAAATCAGAACTCAGGCATGTCTATTCAAAAGTGTGATCTTTCACCA
TTGGATGATCTGAAAGCGCCAACATACTTGGGCAGGCCCTGGAAGGACTACTCTACAACA
GTAATCATGCAGTCCACTATTGGTGCATTCTTGCATCCTCTTGGCTGGATTGAATGGGTC
AAGGGTGTGGAGCCAGCCAACACCATTTTCTATGCTGAGTATGCCAACACCGGCCCAGGT
GCATCTGTGACCCAAAGGGTCAAATGGGCCGGTTATAAGTCCAGCATTACCCCAGACCAG
GCGGCCCAGTATACCGTACCGTCTCTCATACAAGGCGACACTTGGTTACCAGACACAGCT
GTTGCCTTTGATTCTACCTTGTAA

Peptide Sequence

PEP ID

Solyc03g123620.4.1
PEP Infomation

Pectinesterase (AHRD V1 ***- B9GXZ7_POPTR)
Sequence

MDTMKSFKGYGKVDELEEEAFRKKTRKRLIILIVSAVLLLIAVVGIVVGTVVHKNNDSKQ
PSSTAQSLQVLCSLTEYKDSCLSSLSSSNVTDPETLFVLSLKIAMDAVKKLSSGPQNWAK
LTKEPKVQKALEVCETVFDDAIDKLDDSVSSVQVNGGAKLLSGPKIDDLRTWLSSTLTDQ
ETCLDALEEINATFVNDAKLLMKNSTEFTSNSLAIVANIFGILGKFNIPIHRKLLNIGEF
PEWVAAGDRRLMQEVNPTPDVTVASDGSGNVTTIGEAVKMVPKKSKTRFVIHVKEGEYVE
TVRMDKSLWNVMMYGDGKTKTIISGSLNFIDGTPTFETATFAVAGRGFIARDITFRNTAG
AAKHQAVAMRSGSDQSVFYRCSFDAFQDTLYAHSNRQFYRECDITGTIDFMFGNAAVVFQ
SCKIQPRQPLANQFVTITAQGKKDPNQNSGMSIQKCDLSPLDDLKAPTYLGRPWKDYSTT
VIMQSTIGAFLHPLGWIEWVKGVEPANTIFYAEYANTGPGASVTQRVKWAGYKSSITPDQ
AAQYTVPSLIQGDTWLPDTAVAFDSTL*

Transcript Sequence

Transcript ID

Solyc03g123620.4.1
Transcript Infomation

Pectinesterase (AHRD V1 ***- B9GXZ7_POPTR)
Sequence

ATTAATTGTTGTTGCTTATTGTGCTCACGATGGAACTCATAAGACAGACAATCATGTTAT
TTTAATAATATAAAATGATAAGTTGTGTGTTGCCACTAAATTATTCAGGAATCAAGAATG
AGATCTTCAACGACATGGAAGCATCTTGGAAAAAGTGAAGGCCCCATTTTGTCACCTAAA
CTTTGTATAAAAATGGCATCCTTCAATTAGAATTCAGAATCAGACACAAAATACAAAAAC
TTTCCATATTCCAAAAAACTCAACAAGTTACTAAAAAAAATAATAGTAAAAAATTAGTTC
ATTTTCTACATCAATGGATACGATGAAATCTTTCAAAGGCTATGGCAAAGTGGACGAGTT
GGAAGAAGAAGCTTTCAGGAAGAAAACCCGCAAGCGTCTAATCATCTTAATCGTCTCTGC
CGTTCTTCTCCTTATTGCAGTTGTAGGCATAGTTGTTGGAACTGTTGTTCACAAAAACAA
CGATTCGAAACAACCCTCTTCTACTGCTCAATCTCTGCAAGTTCTCTGTAGCTTAACTGA
GTACAAAGATTCGTGCTTATCAAGCTTATCATCCTCAAATGTCACTGATCCAGAAACGTT
GTTCGTACTTTCTTTGAAAATCGCCATGGATGCGGTCAAAAAATTGTCTTCTGGACCACA
GAATTGGGCGAAATTGACTAAAGAACCCAAAGTACAAAAGGCATTGGAAGTCTGCGAGAC
TGTATTCGACGATGCAATTGATAAACTTGACGACTCTGTTTCGTCAGTGCAAGTGAACGG
AGGCGCAAAACTGCTTTCAGGACCTAAAATCGACGATCTCAGAACTTGGTTGAGCTCGAC
GCTTACAGATCAGGAGACTTGCTTGGATGCACTCGAAGAAATCAATGCCACATTCGTGAA
CGACGCTAAGCTGTTAATGAAAAATTCGACTGAATTTACCAGCAACAGTTTAGCTATTGT
GGCTAACATTTTTGGGATTCTAGGTAAATTCAATATTCCGATTCACCGGAAATTGTTGAA
CATTGGAGAATTCCCGGAATGGGTGGCAGCAGGTGACCGGAGACTAATGCAGGAGGTTAA
TCCTACCCCGGACGTGACAGTGGCGAGTGATGGTTCAGGAAATGTTACGACTATTGGAGA
AGCAGTGAAAATGGTGCCGAAAAAGAGCAAAACGAGATTCGTGATACATGTGAAGGAAGG
TGAATATGTGGAGACAGTGAGAATGGATAAGTCGCTTTGGAATGTCATGATGTACGGCGA
TGGCAAAACTAAGACCATTATTTCCGGAAGCTTGAACTTCATCGATGGAACTCCCACTTT
TGAGACGGCCACATTTGCTGTTGCTGGTAGAGGCTTCATTGCCAGAGACATAACATTCAG
GAACACAGCTGGCGCGGCAAAGCACCAGGCAGTGGCCATGCGTTCGGGGTCCGATCAATC
TGTATTTTATCGATGTTCGTTTGATGCCTTCCAGGACACCCTCTATGCTCACTCCAACCG
TCAATTTTACCGAGAATGTGACATTACAGGTACAATCGATTTCATGTTTGGTAACGCTGC
GGTTGTTTTCCAAAGTTGTAAAATCCAGCCGAGACAACCATTAGCCAATCAGTTTGTGAC
CATTACGGCCCAAGGCAAAAAAGATCCAAATCAGAACTCAGGCATGTCTATTCAAAAGTG
TGATCTTTCACCATTGGATGATCTGAAAGCGCCAACATACTTGGGCAGGCCCTGGAAGGA
CTACTCTACAACAGTAATCATGCAGTCCACTATTGGTGCATTCTTGCATCCTCTTGGCTG
GATTGAATGGGTCAAGGGTGTGGAGCCAGCCAACACCATTTTCTATGCTGAGTATGCCAA
CACCGGCCCAGGTGCATCTGTGACCCAAAGGGTCAAATGGGCCGGTTATAAGTCCAGCAT
TACCCCAGACCAGGCGGCCCAGTATACCGTACCGTCTCTCATACAAGGCGACACTTGGTT
ACCAGACACAGCTGTTGCCTTTGATTCTACCTTGTAAACATAAATTAACATTTTCTTTTT
TCTTTGAAGAATCCACTTATTTGGCAATCTACTACTGTGTGTATTCTTTTTTCTGGCAGT
GACATTCTTTTAACCTCATGTAAGAGTATGTTTTATAAAAGCTTTCTGAACAAAACTGAC
AAATATTGCTTGTAACTTAATTTTTAAATTATAAAAGACTTGTGAATAAAATGAGAAACG
TTGAGCCAAGTCAACAATGGAAGGCTCTCTATGCTCTTTCTTGGCTATACA