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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g119960.3.1
CDS Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** A0A061GB09_THECC)
Sequence

ATGATGAAATTGTCACCAGAATCCGTTAATCTTACCGGCAAATCCACGCATTTCTCGGCC
GAATGTTGGTTCGACGACACATGTATCCTCGACATGGACTACTTTGTCAAGACACTTTCC
GGTATTAAAGCCAAAGGTGTCCGTCCTGAACTCATTGGCTCAATTATCACTCACTACGCT
TCTAAATGGCTCCCTGACCTTTCTAATGACGAAGGTTCAGATGTTTTTACCAGCCAGAAA
GATTTTGAGGACTCACCGGAAAGTGTAACAGCGATATGGATGAAGAAGAGGTTTTTCGTG
GAAACATTAGTCGGAATTCTCCCGCCGGAGAAGGATTCGATTCCGTGCAATTTCCTTTTA
CGGTTGCTTCGGGTAGCGAATATGGTTCGGGTCGAGCCAAGTTACCGGGTTGATTTGGAG
AAAAGGATATCATGGCAATTGGATCAGGCTACATTGAAGGAGTTATTGATTCCATCATTT
GTTCATACGTGTGGGACATTATTGGATGTTGAACTTGTTCTTAGGTTGGTTAAGAGGTTT
ATGAATTTGGATGAAAGTGTAAGAAGTGGATCTGCTTTAATTAAAGTTGCTAAACTTATC
GATAATTACTTAGCTGAAGCTGCTGTTGATGCTAATTTGACATGGTCCGAGTTTTTTGGA
CTTGTTGATGCACTTCCTGCTCATGCTCGTTCTACAGATGATGGCTTGTACAGAGCCATT
GATACCTACCTCAAAACACATCCTGGGGTGTCAAAACAAGAAAGAAAAACTCTATGTAGA
TTGATTGACAGCAGAAAGCTATCGCTAGAGGCATCTCTGCACGCAGCGCAAAACGAACGT
TTACCAGTACGGGCAGTAATCCAAGTGTTGTTATCCGAACAAACAAAGGTTAACAGGCAT
CAAATTGATTGGAGTGGTTCTTTTGTAAGCGGAGCGCGAAGTCCCAATCAACTAGGACTA
ATTGAGCCTCCAGCTCGGTGTATGTCAAAGCGCGAAATGAACGCTCAGCAAATGGAGATA
AAGAGGCTAAAAGAAGATGTCCTGAGGCTACAGAGTCAGTGTATGACAATGCAATCACAA
ATTGAGAAGTTGTTAGAGAAGAAACGAGGAAGTGGTTTGTTTGGTTGGAAGAAGATAATT
GTGCCTTCTTTAGTGAATAAGGTTGATAAAATTGGAGAAATTGATAGAGAAACTGATGTG
GGATATGTTGGAAGACAAACACCAGGGGATATGAAGACTAGGCTTGTTAGAGGCAGAACA
CCTAACAAATGGAGGAAATCTTTGTCCTGA

Peptide Sequence

PEP ID

Solyc03g119960.3.1
PEP Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** A0A061GB09_THECC)
Sequence

MMKLSPESVNLTGKSTHFSAECWFDDTCILDMDYFVKTLSGIKAKGVRPELIGSIITHYA
SKWLPDLSNDEGSDVFTSQKDFEDSPESVTAIWMKKRFFVETLVGILPPEKDSIPCNFLL
RLLRVANMVRVEPSYRVDLEKRISWQLDQATLKELLIPSFVHTCGTLLDVELVLRLVKRF
MNLDESVRSGSALIKVAKLIDNYLAEAAVDANLTWSEFFGLVDALPAHARSTDDGLYRAI
DTYLKTHPGVSKQERKTLCRLIDSRKLSLEASLHAAQNERLPVRAVIQVLLSEQTKVNRH
QIDWSGSFVSGARSPNQLGLIEPPARCMSKREMNAQQMEIKRLKEDVLRLQSQCMTMQSQ
IEKLLEKKRGSGLFGWKKIIVPSLVNKVDKIGEIDRETDVGYVGRQTPGDMKTRLVRGRT
PNKWRKSLS*

Transcript Sequence

Transcript ID

Solyc03g119960.3.1
Transcript Infomation

Phototropic-responsive NPH3 family protein (AHRD V3.3 *** A0A061GB09_THECC)
Sequence

ACTACATAACTTACAAGCTCCATCAAAGGGTATTATTGTCAGCAACAGATAAAAACAATG
TTGTCAACATTATGTGGTGCCAATTTTTTTTATCCACTTGAGGTAATAAATCTCACGTAA
CAACAAGAGAGGGAAAAAAACATCAATGGCCATAAATTTTCTTTCATCCATATGAATTAC
TCTAGCTAGTGTGTGTATATTCACACAAACTCCAAAAATGATGAAATTGTCACCAGAATC
CGTTAATCTTACCGGCAAATCCACGCATTTCTCGGCCGAATGTTGGTTCGACGACACATG
TATCCTCGACATGGACTACTTTGTCAAGACACTTTCCGGTATTAAAGCCAAAGGTGTCCG
TCCTGAACTCATTGGCTCAATTATCACTCACTACGCTTCTAAATGGCTCCCTGACCTTTC
TAATGACGAAGGTTCAGATGTTTTTACCAGCCAGAAAGATTTTGAGGACTCACCGGAAAG
TGTAACAGCGATATGGATGAAGAAGAGGTTTTTCGTGGAAACATTAGTCGGAATTCTCCC
GCCGGAGAAGGATTCGATTCCGTGCAATTTCCTTTTACGGTTGCTTCGGGTAGCGAATAT
GGTTCGGGTCGAGCCAAGTTACCGGGTTGATTTGGAGAAAAGGATATCATGGCAATTGGA
TCAGGCTACATTGAAGGAGTTATTGATTCCATCATTTGTTCATACGTGTGGGACATTATT
GGATGTTGAACTTGTTCTTAGGTTGGTTAAGAGGTTTATGAATTTGGATGAAAGTGTAAG
AAGTGGATCTGCTTTAATTAAAGTTGCTAAACTTATCGATAATTACTTAGCTGAAGCTGC
TGTTGATGCTAATTTGACATGGTCCGAGTTTTTTGGACTTGTTGATGCACTTCCTGCTCA
TGCTCGTTCTACAGATGATGGCTTGTACAGAGCCATTGATACCTACCTCAAAACACATCC
TGGGGTGTCAAAACAAGAAAGAAAAACTCTATGTAGATTGATTGACAGCAGAAAGCTATC
GCTAGAGGCATCTCTGCACGCAGCGCAAAACGAACGTTTACCAGTACGGGCAGTAATCCA
AGTGTTGTTATCCGAACAAACAAAGGTTAACAGGCATCAAATTGATTGGAGTGGTTCTTT
TGTAAGCGGAGCGCGAAGTCCCAATCAACTAGGACTAATTGAGCCTCCAGCTCGGTGTAT
GTCAAAGCGCGAAATGAACGCTCAGCAAATGGAGATAAAGAGGCTAAAAGAAGATGTCCT
GAGGCTACAGAGTCAGTGTATGACAATGCAATCACAAATTGAGAAGTTGTTAGAGAAGAA
ACGAGGAAGTGGTTTGTTTGGTTGGAAGAAGATAATTGTGCCTTCTTTAGTGAATAAGGT
TGATAAAATTGGAGAAATTGATAGAGAAACTGATGTGGGATATGTTGGAAGACAAACACC
AGGGGATATGAAGACTAGGCTTGTTAGAGGCAGAACACCTAACAAATGGAGGAAATCTTT
GTCCTGATGAGAAAAAAATTGGTGTTCAATTTGGAATAGGTGCAGGTTATCAGTCGATGC
AAAAGTACTAGAACTACTAATTAAGATTCATATAATAAGCTTTGGTTATTTTAATGTCTT
TCTATCTTGTAGTTCCTGTCTCATGAAAAAAGAACAAAAAAAAAGGACTTTGTATCTTAT
ATTTAATTTATTGAAGATTTGTTTATCTGAATTTATTCTTTTGTCAAAAGGGGAAAATAT
CTCCACTCTTTG