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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g118800.3.1
CDS Infomation

Spliceosome associated protein, putative (AHRD V3.3 *** B9RRM5_RICCO)
Sequence

ATGACGACACGAATAGCTCCGGGGGTCGGAGCAAACCTTCTCGGCCAACACGCGGCGGAG
CGTAACCAAGACGCCACCGCCTATGTCGGTAATCTCGACCCTCAGATTTCTGAAGAGTTG
TTATGGGAGCTGTTTGTTCAAGCAGGTCCAGTAGTAAATGTTTATGTCCCCAAGGACAGA
GTTACGAATGCTCATCAGGGTTACGGTTTTGTGGAATTCCGAAGTGAAGAAGATGCTGAC
TATGCAATAAAGGTACTGAATATGATAAAACTTTATGGAAAACCAATACGTGTAAATAAG
GCATCACAAGATAAAAAGAGTGTTGATGTTGGTGCCAACTTGTTTGTTGGGAACCTTGAT
CCTGATGTAGATGAGAAGCTTCTCTACGACACTTTTAGTGCTTTTGGAGTTGTTGTCTCA
AATCCAAAGATTATGCGAGACCCCGAGACAGGGAATTCCCGGGGTTTTGGTTTTATTAGT
TATGATTCATTTGATGCCTCTGATGCAGCAATTGAGGCTATGAATGGTCAATATCTTTGC
AATCGCCAAATCACGGTGTCCTATGCCTACAAGAAAGATACAAAGGGAGAACGTCATGGA
ACCCCTGCTGAGAGGGTTTTAGCTTCGAGTAATCCAGGTACCCAGAAAAACAGGCCTCAC
ACCATGTTTGCAAGTGGACCCCCGACACTTCCCGGTGTTCCTCAAGCCAATGGTGCGGTT
GGTGCTCCTGTTCCCCCACGTCCATTTGCAAATGGTCCTATGCCTCCAGCTCCTGTTCCA
GCAATTCGGCCACCACCTATGCAGCCTAATATCTACCCACCAATGCAGATGCCTCCACCA
CAAGCTTGGCAGGGACAGCCTATGCCACCACCAGTTGCAGGTGGCATTCCGCAGCAGCAA
ATGCAATTCAGAGGAATGCCACCTCCGCCGCCCCCACAGTTAGCTCCACCCCTAAATAGG
CCCCCTCCACCACCAGCTGCAATGGGTGGTAATGTTTGGCGTCCGCCACCACCTCCTCAG
CACTTCAATGGCGGTCATCATGCTATGCCCCATATGTCGATGCAGCCACCCCCTCCACCT
CCTGCACCAGGTTGA

Peptide Sequence

PEP ID

Solyc03g118800.3.1
PEP Infomation

Spliceosome associated protein, putative (AHRD V3.3 *** B9RRM5_RICCO)
Sequence

MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR
VTNAHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSVDVGANLFVGNLD
PDVDEKLLYDTFSAFGVVVSNPKIMRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYLC
NRQITVSYAYKKDTKGERHGTPAERVLASSNPGTQKNRPHTMFASGPPTLPGVPQANGAV
GAPVPPRPFANGPMPPAPVPAIRPPPMQPNIYPPMQMPPPQAWQGQPMPPPVAGGIPQQQ
MQFRGMPPPPPPQLAPPLNRPPPPPAAMGGNVWRPPPPPQHFNGGHHAMPHMSMQPPPPP
PAPG*

Transcript Sequence

Transcript ID

Solyc03g118800.3.1
Transcript Infomation

Spliceosome associated protein, putative (AHRD V3.3 *** B9RRM5_RICCO)
Sequence

AATTACCCATCTCGATTGTTAAATTTAACCGAAAATATGAAATTCTTTTTCAACTATAGA
CTACAATTTTGTGATTCAGAAACTGCAATATAATAAAACTACACAAATACAAAGAAAGAA
AGGAAAATCCGTCTATAAGGGTCATTTTTGTCATTTTGTCGCCGTTTTTCTTTGTTTCTT
AGTCTGCTTTAGTTCTCCTAGCTATGATAGAAGCAAGTCGCTAAGCGAAGCAGTGTGTGA
GAGAGAGAGAGAGAGCGGAGTATGACGACACGAATAGCTCCGGGGGTCGGAGCAAACCTT
CTCGGCCAACACGCGGCGGAGCGTAACCAAGACGCCACCGCCTATGTCGGTAATCTCGAC
CCTCAGATTTCTGAAGAGTTGTTATGGGAGCTGTTTGTTCAAGCAGGTCCAGTAGTAAAT
GTTTATGTCCCCAAGGACAGAGTTACGAATGCTCATCAGGGTTACGGTTTTGTGGAATTC
CGAAGTGAAGAAGATGCTGACTATGCAATAAAGGTACTGAATATGATAAAACTTTATGGA
AAACCAATACGTGTAAATAAGGCATCACAAGATAAAAAGAGTGTTGATGTTGGTGCCAAC
TTGTTTGTTGGGAACCTTGATCCTGATGTAGATGAGAAGCTTCTCTACGACACTTTTAGT
GCTTTTGGAGTTGTTGTCTCAAATCCAAAGATTATGCGAGACCCCGAGACAGGGAATTCC
CGGGGTTTTGGTTTTATTAGTTATGATTCATTTGATGCCTCTGATGCAGCAATTGAGGCT
ATGAATGGTCAATATCTTTGCAATCGCCAAATCACGGTGTCCTATGCCTACAAGAAAGAT
ACAAAGGGAGAACGTCATGGAACCCCTGCTGAGAGGGTTTTAGCTTCGAGTAATCCAGGT
ACCCAGAAAAACAGGCCTCACACCATGTTTGCAAGTGGACCCCCGACACTTCCCGGTGTT
CCTCAAGCCAATGGTGCGGTTGGTGCTCCTGTTCCCCCACGTCCATTTGCAAATGGTCCT
ATGCCTCCAGCTCCTGTTCCAGCAATTCGGCCACCACCTATGCAGCCTAATATCTACCCA
CCAATGCAGATGCCTCCACCACAAGCTTGGCAGGGACAGCCTATGCCACCACCAGTTGCA
GGTGGCATTCCGCAGCAGCAAATGCAATTCAGAGGAATGCCACCTCCGCCGCCCCCACAG
TTAGCTCCACCCCTAAATAGGCCCCCTCCACCACCAGCTGCAATGGGTGGTAATGTTTGG
CGTCCGCCACCACCTCCTCAGCACTTCAATGGCGGTCATCATGCTATGCCCCATATGTCG
ATGCAGCCACCCCCTCCACCTCCTGCACCAGGTTGAAAATTGGAGATGCCTAATTTTGTA
CTACTTTGAATGTTTTTCCTTTCTGGGATATAACATATTTTTAAAATAGTACTTGCACTG
TAAAAACGTGTTGATGTTGGTATTTCAAACTTTTAGTTGAGGATTTTTTGATTTGGATAT
AACTTTTGTTTTTGACCTTTATTATCGGAGACAGGAATTTGATAATTTTTGTGGGAAGGC
CATATGCAATCTCTGATGTGTATCGTAACAATACAAACACATTACAAAATTAGATAGACC
ATCATCCGTACTTTGACAACAATGTTTGATGATGTTAAACACCACGGTTTTAGTGTATAG
CAAAAGCCCTCAATACGCTGGTAAGTTAATGTTTTTGCCAAATATTGAACTTTGATCATA
CATCAAATTGTGAATATTGAATCGCCTAAAATTAGGTTTCTTTGTTTCTAAACAGTTATT
TCTCCAATTTTGCATATTCGGTCACTAATTTTTTCTCCTGTTGGGTGCGGCTGACTCTGT
TTGAATGGTAGAATATATTCCTTCGAGCGGTAGCATTCAAACGTAAAAGTTGATTCTAAT
TATATAAAGTATGCTATTTTTATAACAATTATCATCTGCAATAATATCAATCAAGCTTTT
CTCTTTGGAACGCAATTCCTTTTTAGATAAACCACGTCAGATTATAGTTCCTGTGTTGAT
TAAAATTGTATTGCGTGAACTTTAGGAATGATAGAATCCAAGTTTTAGATGAATAGTTGA
ATTAATAGTAGGATTTGCAAGAGACAAGTGTTGAGTAGTTCGAATATTGACTAGTAGATG
ATAGATAAGGTCCATTTTCAGATTAGGACCCAACACGTCTTACACACGCCTAAAATCTCA
TGTGGTCCCTCCTTTCTTTCTCTATCCTATTGAAATTTCCTACTACTTCCCCAAAAATGC
CTTTATCATCCTTAAATATCTATTTATGGCTAACAGTTATCAAATCTTGAAACTAAAAAA
TATTCTATTCTCTTTAATTTTTGGTCTAATAATGTTGTGTTGTTTTATTAACCATAGTCG
AA