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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g117730.3.1
CDS Infomation

Tubby protein, putative (AHRD V3.3 *** B9RGP8_RICCO)
Sequence

ATGTCTAGTTTCAAGAAAACTACAAACCCTCTTCGTTCTTCGACTTCTTATAATTCCCTT
TATGATAATCCTTTAAATGAGCTCGGACAAAACCGGAGCAGCAGTACGGTTGGTGAAGCA
TTGGGTGTTCATTTGCTTCAGAACCAACTTGTTATATCTGATAATAAAGAAAATTCTGCA
CCACATAAACCTGAAAAATCCAATCTTTGTGATAAAGAATATGATTGGACTAGTAAGGTT
GTGAATAATGAGTTTACGAGGGTTGGGGCTGATGTGAAAGACTCTGTTCTGAGGCCATCT
TCACTTCAGCTATGTATACAAAAAAATGAACCTGATTCTAAAATTGGGTTGAAAATTTGG
GAGCATGCGGATGATACTGAGACCCCGAATTCTGCTAATATTTGGGATTATTCGGATTCT
GAAGCTGCTCCAGCTTCTTCTTGGTCTACACTTCCTAATAGGTCATTGTTGTATAGGCCT
TTGCCTATAGACATTGGACGATGTACTTGTGTGATAGTGAAAGAAGCATCTCAAGAAAGC
AGGGATGGAGGGAGTTTTTACTCACTTTATACAAATGAGGGGCAGGGGCGTCAGAATCGG
AAACTTGCCATAGCCCATCATAGAAGGCGTAATGGGAAATCTGAGTTTGTAGTTGCTCAA
AATACAAAGGGATTATGGGGAAAATCTGATGACAGTTTGATTGGACATGTAACAGCTAAT
CTTCTGGGATCAAAATACCAAATATGGGATCAGGGCCGTCCTAATTCCACAACCAAACAA
TCAAAATTGCTGGGTGCTGTAACATTCATGCCTACAATCGCGACGTGGACTGGAAGCTAC
AGAAGGATAAAAGCATACATTCCAAAACACCAGTCCATGCAGTTAAAATGTACAGCTCAG
CACATCAATGGACTACCCGCGGACTGGGAGGAGCATATGGACAAAGTGAATCAGTTGTTT
TCAAAGATTCCTCATTACAATAAGGTCTCAAGACAGTATGAGTTAGATTTTAGAGATAGA
GGAAGGGCAGGACTCCGAATCCAGAGCTCAGTTAAGAATTTTCAGCTGACTATGGAGAAA
AATGGAAGGCAGACAATTCTACAACTTGGTAGAGTGGGGAAAGCTAAGTATGTGATGGAC
TACAGGTACCCTTTGACAGGTTATCAAGCGTTTTGCATATGTTTGGCTTCTATTGATTCG
AAGTTGTGTTGCACACTGTAA

Peptide Sequence

PEP ID

Solyc03g117730.3.1
PEP Infomation

Tubby protein, putative (AHRD V3.3 *** B9RGP8_RICCO)
Sequence

MSSFKKTTNPLRSSTSYNSLYDNPLNELGQNRSSSTVGEALGVHLLQNQLVISDNKENSA
PHKPEKSNLCDKEYDWTSKVVNNEFTRVGADVKDSVLRPSSLQLCIQKNEPDSKIGLKIW
EHADDTETPNSANIWDYSDSEAAPASSWSTLPNRSLLYRPLPIDIGRCTCVIVKEASQES
RDGGSFYSLYTNEGQGRQNRKLAIAHHRRRNGKSEFVVAQNTKGLWGKSDDSLIGHVTAN
LLGSKYQIWDQGRPNSTTKQSKLLGAVTFMPTIATWTGSYRRIKAYIPKHQSMQLKCTAQ
HINGLPADWEEHMDKVNQLFSKIPHYNKVSRQYELDFRDRGRAGLRIQSSVKNFQLTMEK
NGRQTILQLGRVGKAKYVMDYRYPLTGYQAFCICLASIDSKLCCTL*

Transcript Sequence

Transcript ID

Solyc03g117730.3.1
Transcript Infomation

Tubby protein, putative (AHRD V3.3 *** B9RGP8_RICCO)
Sequence

AAAAAAAAATCCTATTTATATAACCTGTTGTTCTGTTCTTTTCACCCAAATTGGGTGTTC
AAAAATGTCTAGTTTCAAGAAAACTACAAACCCTCTTCGTTCTTCGACTTCTTATAATTC
CCTTTATGATAATCCTTTAAATGAGCTCGGACAAAACCGGAGCAGCAGTACGGTTGGTGA
AGCATTGGGTGTTCATTTGCTTCAGAACCAACTTGTTATATCTGATAATAAAGAAAATTC
TGCACCACATAAACCTGAAAAATCCAATCTTTGTGATAAAGAATATGATTGGACTAGTAA
GGTTGTGAATAATGAGTTTACGAGGGTTGGGGCTGATGTGAAAGACTCTGTTCTGAGGCC
ATCTTCACTTCAGCTATGTATACAAAAAAATGAACCTGATTCTAAAATTGGGTTGAAAAT
TTGGGAGCATGCGGATGATACTGAGACCCCGAATTCTGCTAATATTTGGGATTATTCGGA
TTCTGAAGCTGCTCCAGCTTCTTCTTGGTCTACACTTCCTAATAGGTCATTGTTGTATAG
GCCTTTGCCTATAGACATTGGACGATGTACTTGTGTGATAGTGAAAGAAGCATCTCAAGA
AAGCAGGGATGGAGGGAGTTTTTACTCACTTTATACAAATGAGGGGCAGGGGCGTCAGAA
TCGGAAACTTGCCATAGCCCATCATAGAAGGCGTAATGGGAAATCTGAGTTTGTAGTTGC
TCAAAATACAAAGGGATTATGGGGAAAATCTGATGACAGTTTGATTGGACATGTAACAGC
TAATCTTCTGGGATCAAAATACCAAATATGGGATCAGGGCCGTCCTAATTCCACAACCAA
ACAATCAAAATTGCTGGGTGCTGTAACATTCATGCCTACAATCGCGACGTGGACTGGAAG
CTACAGAAGGATAAAAGCATACATTCCAAAACACCAGTCCATGCAGTTAAAATGTACAGC
TCAGCACATCAATGGACTACCCGCGGACTGGGAGGAGCATATGGACAAAGTGAATCAGTT
GTTTTCAAAGATTCCTCATTACAATAAGGTCTCAAGACAGTATGAGTTAGATTTTAGAGA
TAGAGGAAGGGCAGGACTCCGAATCCAGAGCTCAGTTAAGAATTTTCAGCTGACTATGGA
GAAAAATGGAAGGCAGACAATTCTACAACTTGGTAGAGTGGGGAAAGCTAAGTATGTGAT
GGACTACAGGTACCCTTTGACAGGTTATCAAGCGTTTTGCATATGTTTGGCTTCTATTGA
TTCGAAGTTGTGTTGCACACTGTAAACGGGGAATCTCCGGCTCCTTTTGTTGTGAACAAC
AAAGTCACTTATTTCAATTATTTTGTACAAGCAATTTAGACATGTTCTATTTAATGAATA
ATACAGCATTCTGCACTACTGTAGAATTTCCTATGAATGTTGTGAACGAACGATTATCTG
TAACGAGTACGAACTTAGATTGTGTATTGTAAACGTACGACTGTTTCGAAATTGTTTGTG
TTTCATAAACATGTGAATTTCACCATTCGATAATTAAGAGAAAGATATAAACAAACCCCT
ACCACATAACATGCAAAGGTAACAGTCTTTGTATTATTACTGTAGAACTCATAATAACAT
ACCAAAGAATGTTTATCAATTTCTCTATCTACATA