Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g115790.1.1
CDS Infomation

LOW QUALITY:Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A0B2QFK0_GLYSO)
Sequence

ATGTCAGTTGAAGAATCAGTTCCCGCCAAGCAGAGAGGATCAAGAGCTCTCCAACAACGA
CTCTTTTCTCTCTTGCAGAGCTGCAAATCTATCAAACAGCTAACACAGATCCACGCCCAC
GTTATCACCAATGGATTTACCCAGAAAAATTTCATTCTTGTAAGATTACTTTCTCCTTTC
TTAACATCTTACAGTCTCAAATATGCCGACCATATTTTCAGTCAAGTTCGAAGTCCAAGC
ACCACCCTTTGGAACCAAATTATTAGGGGTCATGCCCGTAGCGAAAACCCACAGAAATCT
ATTGAACTTTTTAATCAAATGGAGATATCAACTGCCATGCCTGATGGGTATACATATTCC
TATGTACTTAATGGTTGTGCAAAAGGGGGTTTGTTCAGGGAAGGTCAGCAGGTTCATGGG
AAGATTGTAAAAAATTGGTCTTTGCTAAATGTGTTTGTTCAGACTAATTTGGTTAATTTA
TATTCAACAACCGGAGGGGAAAACTGCATTGATAATGCACAGAAGATGTTTGATGAAATG
ACCGAGAAAAATGTTGTGACTTGGAATTCATTGCTGTTTGGGTATTTTAGAAATGGGGAT
GCTGATGAGGCTCTTAGACTTTTCGATGAGATGCCACATAAGAATGTTGTTTCCTGGACG
ACAGTGATTTCAGGATGTACGCAGAATGGAAGATGTCAACATGCGCTGGCATTGTTTCGC
CTGATGCAAAGGCGTCATGTGGAATTTGATCAGGTGACTTTAGTGGCTGTGTTATCAGCA
TGTGCTGAATCGGGAGCTCTGGATCTGGGGAAATGGATTCATTCAACTGTTGTTGAGTCC
TCACAGTTGAGGAATGAGCCGGTGTTGGTGTCATTTTACAATGCACTTATACATATGTAT
GCTAGTTGTGGTGAAATAGAGGAAGCTTATCGAGTATTTGAAGAGATGCCTAGAAGAAAC
TCCATTTCTTGGACCAGTATGATCACAGGTTTTGCAAAACAAGGGTATGCACATGAAGCT
CTTACTATTTTCCAGCAGATGGAAAGCTGGGGAGGAAATGATGTTAGGCCGGATGAGATA
ACATTCTTAGGTGTTCTGTTTGCTTGCAGTCATGCTGGTTATGTCAACGAGGGATACCGA
TACTTTAGATGTATGAAAGAGACTTGGGATATTGAGCCAAGGATTGAGCACTATGGATGC
ATGGTTGATATGCTCAGTCGTGCTGGACTTTTTGATGAAGCCACGACACTTGTTGAGACA
ATGCCTATGAAGCCAAATGAGGCTGTTTGGGGTGCTCTTCTTGGTGGATGCAAGATACAC
AAAAATGTGAGACTAGCTTCTAGCATAGCTCAAAAGTTGGCTGTGGAGCTTGAAGCTGAT
AGAGCTGCTGGCTACTTCGTGCTCTTGTCAAATCTATATGCAACTGAAAAGAGGTGGCAA
GATGTTGTAATCACGAGACAGAAGATGTATGGAATGGGTCTTAAAAAGTCTCCAGGTCAA
AGCAAAATAGAAGCTGACGGTACGACTCATAATTTTCTAGCCAGTGACCTAAGTCACAAG
CATACTTGTTCAGTCTATGAGATGCTTGGTCTGCTCACTAGTCAAGCCAAATTGCAAGGT
TACCCGCAAAATATTTCAGAGGGGGAATTAATAGTTTGA

Peptide Sequence

PEP ID

Solyc03g115790.1.1
PEP Infomation

LOW QUALITY:Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A0B2QFK0_GLYSO)
Sequence

MSVEESVPAKQRGSRALQQRLFSLLQSCKSIKQLTQIHAHVITNGFTQKNFILVRLLSPF
LTSYSLKYADHIFSQVRSPSTTLWNQIIRGHARSENPQKSIELFNQMEISTAMPDGYTYS
YVLNGCAKGGLFREGQQVHGKIVKNWSLLNVFVQTNLVNLYSTTGGENCIDNAQKMFDEM
TEKNVVTWNSLLFGYFRNGDADEALRLFDEMPHKNVVSWTTVISGCTQNGRCQHALALFR
LMQRRHVEFDQVTLVAVLSACAESGALDLGKWIHSTVVESSQLRNEPVLVSFYNALIHMY
ASCGEIEEAYRVFEEMPRRNSISWTSMITGFAKQGYAHEALTIFQQMESWGGNDVRPDEI
TFLGVLFACSHAGYVNEGYRYFRCMKETWDIEPRIEHYGCMVDMLSRAGLFDEATTLVET
MPMKPNEAVWGALLGGCKIHKNVRLASSIAQKLAVELEADRAAGYFVLLSNLYATEKRWQ
DVVITRQKMYGMGLKKSPGQSKIEADGTTHNFLASDLSHKHTCSVYEMLGLLTSQAKLQG
YPQNISEGELIV*

Transcript Sequence

Transcript ID

Solyc03g115790.1.1
Transcript Infomation

LOW QUALITY:Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A0B2QFK0_GLYSO)
Sequence

ATGTCAGTTGAAGAATCAGTTCCCGCCAAGCAGAGAGGATCAAGAGCTCTCCAACAACGA
CTCTTTTCTCTCTTGCAGAGCTGCAAATCTATCAAACAGCTAACACAGATCCACGCCCAC
GTTATCACCAATGGATTTACCCAGAAAAATTTCATTCTTGTAAGATTACTTTCTCCTTTC
TTAACATCTTACAGTCTCAAATATGCCGACCATATTTTCAGTCAAGTTCGAAGTCCAAGC
ACCACCCTTTGGAACCAAATTATTAGGGGTCATGCCCGTAGCGAAAACCCACAGAAATCT
ATTGAACTTTTTAATCAAATGGAGATATCAACTGCCATGCCTGATGGGTATACATATTCC
TATGTACTTAATGGTTGTGCAAAAGGGGGTTTGTTCAGGGAAGGTCAGCAGGTTCATGGG
AAGATTGTAAAAAATTGGTCTTTGCTAAATGTGTTTGTTCAGACTAATTTGGTTAATTTA
TATTCAACAACCGGAGGGGAAAACTGCATTGATAATGCACAGAAGATGTTTGATGAAATG
ACCGAGAAAAATGTTGTGACTTGGAATTCATTGCTGTTTGGGTATTTTAGAAATGGGGAT
GCTGATGAGGCTCTTAGACTTTTCGATGAGATGCCACATAAGAATGTTGTTTCCTGGACG
ACAGTGATTTCAGGATGTACGCAGAATGGAAGATGTCAACATGCGCTGGCATTGTTTCGC
CTGATGCAAAGGCGTCATGTGGAATTTGATCAGGTGACTTTAGTGGCTGTGTTATCAGCA
TGTGCTGAATCGGGAGCTCTGGATCTGGGGAAATGGATTCATTCAACTGTTGTTGAGTCC
TCACAGTTGAGGAATGAGCCGGTGTTGGTGTCATTTTACAATGCACTTATACATATGTAT
GCTAGTTGTGGTGAAATAGAGGAAGCTTATCGAGTATTTGAAGAGATGCCTAGAAGAAAC
TCCATTTCTTGGACCAGTATGATCACAGGTTTTGCAAAACAAGGGTATGCACATGAAGCT
CTTACTATTTTCCAGCAGATGGAAAGCTGGGGAGGAAATGATGTTAGGCCGGATGAGATA
ACATTCTTAGGTGTTCTGTTTGCTTGCAGTCATGCTGGTTATGTCAACGAGGGATACCGA
TACTTTAGATGTATGAAAGAGACTTGGGATATTGAGCCAAGGATTGAGCACTATGGATGC
ATGGTTGATATGCTCAGTCGTGCTGGACTTTTTGATGAAGCCACGACACTTGTTGAGACA
ATGCCTATGAAGCCAAATGAGGCTGTTTGGGGTGCTCTTCTTGGTGGATGCAAGATACAC
AAAAATGTGAGACTAGCTTCTAGCATAGCTCAAAAGTTGGCTGTGGAGCTTGAAGCTGAT
AGAGCTGCTGGCTACTTCGTGCTCTTGTCAAATCTATATGCAACTGAAAAGAGGTGGCAA
GATGTTGTAATCACGAGACAGAAGATGTATGGAATGGGTCTTAAAAAGTCTCCAGGTCAA
AGCAAAATAGAAGCTGACGGTACGACTCATAATTTTCTAGCCAGTGACCTAAGTCACAAG
CATACTTGTTCAGTCTATGAGATGCTTGGTCTGCTCACTAGTCAAGCCAAATTGCAAGGT
TACCCGCAAAATATTTCAGAGGGGGAATTAATAGTTTGA