Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g114920.1.1
CDS Infomation

Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT5G60960.1)
Sequence

ATGCGTCGAATCACCACCCCATCAACAATCCGGACACTTCTCCGTCGCTGCATTTCTTCG
TCGGCGACCAATCAAACGCACCACCTTCCTTGTTCCCAGATTTCCCTTTCCAAAACCCAT
TTTTTCACTTCACCACTTCCCCACTATGATTCATTTTCTTTTTCGCACTATTCTACCAGT
TTCAGATCCTTTTCATCCCAATCCGGAAGGGATCAAGAAGAAACAACCGCTCAGTCTCTT
TCATCTGAGCTTGTTAAGGAGCTCGATGCAGAATCTCTATCAATTCCACAAAGTCTCGAT
CTTTCTTTCTCCCATGTCAATTTGACGCCTTCCCTGATCCTTACCACACTCAATCTTTCC
CCAGATGCAGGCCGGACAGTATTAGGGTTTTTCAAGTGGGTTAAGTCTAAGGAAAGTTTC
AAGGTTGATGATGAGGTTGTGTCTTGCTTTGTGGATTATTTTGGAAGGAGAAAGGATTTT
AAAGCTGCCCAGGATGTACTTATTGATGGGATAGGGTTAACGGGAAGGAAGACGTTAGAA
TCCATGGTTGATAGACTTGTTAGGGCTGGAAGACCCACTCAGACAGTAGCATTTTTTGAA
AATATGGAGAAAGATTACGGTTTAGCGAGGGATTTAGATTCTTTGAAGTTGGTAGTTTCT
AGGTTGTGTGAGCATGGATTTGCTAGCTATGCTGAGAAAATGGTTAAAAGTTTGGCTTGC
GAATTCTTCCCGGACGAATATATATGCGATATGCTGGTAAGGGGTTGGTGTATTGATGGG
AAACTTGATGAGGCACAGCGGTTAGCTGGGGAGATGTATAGGGGAGGGTTCGAAATTGGG
GCTTCAGCTTATAATGCAATACTTGATTGTGTTTGTAAGCTGTGTAGGAAGAAGGATCCT
TTCAGGCTTCAATCTGAGGCAGAAAATGTGTTGCTAGAAATGGAGGAGAAAGGCGTTCCT
AGAGACGTCGAAACCTTTAATGTTTTGATTACTAACTTATGTAAGATTAGGAAAACAGAG
GATGCTTTGAATCTGTTTTATAGGATGGGGGAGTGGGGTTGTAATCCCGATGAAACAACG
TTTCTCACTCTTATTAGGAGCTTGTACCAGGCTGCTAGAGTTGGAGAAGGTGATGAAATG
ATTGATAGGATGAGATCTGCAGGATTTGGGGATGCGCTTGATAAGAAGGCCTATTATGAA
TTCTTGAAAATATTATGTGGGATTGAAAGATTGGATCATGCTATGAGTGTCTTTGCAAAG
ATGAAAGAGGATGGTTGCAAACCGGGGTTAAAGACATACGACTTGTTGATCGGAAAAATG
GTTGCTCATAATCGGGTTGACAAAGCAAATGCACTATATAAGGAAGCCGAGAGCAATGAT
CTGGCAGTTGAACCAAAGGCCTATATGGTGCACCCAAAATATGCAAAGAAGAAATCCGCC
CCTGCCAAGAAGGAGGAAAAGAAGAGGGAGACGTTTCCAGAGAAAATGGCTAGAAAGAGG
ACAAAACTAAAGAAAATTCGCCTTAGTTATGTGAAGAAACCTAAAAAGATGGCCCGACGA
GCATTTTGA

Peptide Sequence

PEP ID

Solyc03g114920.1.1
PEP Infomation

Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT5G60960.1)
Sequence

MRRITTPSTIRTLLRRCISSSATNQTHHLPCSQISLSKTHFFTSPLPHYDSFSFSHYSTS
FRSFSSQSGRDQEETTAQSLSSELVKELDAESLSIPQSLDLSFSHVNLTPSLILTTLNLS
PDAGRTVLGFFKWVKSKESFKVDDEVVSCFVDYFGRRKDFKAAQDVLIDGIGLTGRKTLE
SMVDRLVRAGRPTQTVAFFENMEKDYGLARDLDSLKLVVSRLCEHGFASYAEKMVKSLAC
EFFPDEYICDMLVRGWCIDGKLDEAQRLAGEMYRGGFEIGASAYNAILDCVCKLCRKKDP
FRLQSEAENVLLEMEEKGVPRDVETFNVLITNLCKIRKTEDALNLFYRMGEWGCNPDETT
FLTLIRSLYQAARVGEGDEMIDRMRSAGFGDALDKKAYYEFLKILCGIERLDHAMSVFAK
MKEDGCKPGLKTYDLLIGKMVAHNRVDKANALYKEAESNDLAVEPKAYMVHPKYAKKKSA
PAKKEEKKRETFPEKMARKRTKLKKIRLSYVKKPKKMARRAF*

Transcript Sequence

Transcript ID

Solyc03g114920.1.1
Transcript Infomation

Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT5G60960.1)
Sequence

ATGCGTCGAATCACCACCCCATCAACAATCCGGACACTTCTCCGTCGCTGCATTTCTTCG
TCGGCGACCAATCAAACGCACCACCTTCCTTGTTCCCAGATTTCCCTTTCCAAAACCCAT
TTTTTCACTTCACCACTTCCCCACTATGATTCATTTTCTTTTTCGCACTATTCTACCAGT
TTCAGATCCTTTTCATCCCAATCCGGAAGGGATCAAGAAGAAACAACCGCTCAGTCTCTT
TCATCTGAGCTTGTTAAGGAGCTCGATGCAGAATCTCTATCAATTCCACAAAGTCTCGAT
CTTTCTTTCTCCCATGTCAATTTGACGCCTTCCCTGATCCTTACCACACTCAATCTTTCC
CCAGATGCAGGCCGGACAGTATTAGGGTTTTTCAAGTGGGTTAAGTCTAAGGAAAGTTTC
AAGGTTGATGATGAGGTTGTGTCTTGCTTTGTGGATTATTTTGGAAGGAGAAAGGATTTT
AAAGCTGCCCAGGATGTACTTATTGATGGGATAGGGTTAACGGGAAGGAAGACGTTAGAA
TCCATGGTTGATAGACTTGTTAGGGCTGGAAGACCCACTCAGACAGTAGCATTTTTTGAA
AATATGGAGAAAGATTACGGTTTAGCGAGGGATTTAGATTCTTTGAAGTTGGTAGTTTCT
AGGTTGTGTGAGCATGGATTTGCTAGCTATGCTGAGAAAATGGTTAAAAGTTTGGCTTGC
GAATTCTTCCCGGACGAATATATATGCGATATGCTGGTAAGGGGTTGGTGTATTGATGGG
AAACTTGATGAGGCACAGCGGTTAGCTGGGGAGATGTATAGGGGAGGGTTCGAAATTGGG
GCTTCAGCTTATAATGCAATACTTGATTGTGTTTGTAAGCTGTGTAGGAAGAAGGATCCT
TTCAGGCTTCAATCTGAGGCAGAAAATGTGTTGCTAGAAATGGAGGAGAAAGGCGTTCCT
AGAGACGTCGAAACCTTTAATGTTTTGATTACTAACTTATGTAAGATTAGGAAAACAGAG
GATGCTTTGAATCTGTTTTATAGGATGGGGGAGTGGGGTTGTAATCCCGATGAAACAACG
TTTCTCACTCTTATTAGGAGCTTGTACCAGGCTGCTAGAGTTGGAGAAGGTGATGAAATG
ATTGATAGGATGAGATCTGCAGGATTTGGGGATGCGCTTGATAAGAAGGCCTATTATGAA
TTCTTGAAAATATTATGTGGGATTGAAAGATTGGATCATGCTATGAGTGTCTTTGCAAAG
ATGAAAGAGGATGGTTGCAAACCGGGGTTAAAGACATACGACTTGTTGATCGGAAAAATG
GTTGCTCATAATCGGGTTGACAAAGCAAATGCACTATATAAGGAAGCCGAGAGCAATGAT
CTGGCAGTTGAACCAAAGGCCTATATGGTGCACCCAAAATATGCAAAGAAGAAATCCGCC
CCTGCCAAGAAGGAGGAAAAGAAGAGGGAGACGTTTCCAGAGAAAATGGCTAGAAAGAGG
ACAAAACTAAAGAAAATTCGCCTTAGTTATGTGAAGAAACCTAAAAAGATGGCCCGACGA
GCATTTTGA