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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g114280.3.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *-* AT3G61180.1)
Sequence

ATGGCGATGAGAGGAGTTGATTTTAAATGGTATGATGGGTTCTTCCTGTCAATGCTGGCT
ACTAGTATAATCATTGTAGCTATCAACTGGAAAAGGTACCATCTTTGTATATACCCATTG
CATATCTGGATCGTGGTTGACTATACAACAGTGTTTGTGTTTCGGCTGTTGATGTTTGTA
GATAATGGACTTGCTGCTGGAATGGGATTGGATTTTGGTTGGCAGCAGAGATATGGCCGG
TTTTGTGGAAGAGTAGCTGTTCTTTCAGTTCTTGCCTTGCTTCTTTACCCCTTTCTTTGG
GCTTGGACCATCATTGGGACGTTATGGTTCACTAGTGCAAGAAACTGCCTTCCAGAAGAA
GGCCAAAAGTGGGGCTTCCTAATATGGTTGCTGTTCAGCTACTGTGGACTCATGTGCATA
GCTTGCATATCGACAGGGAAGTGGTTAGCTAGAAGGCAAGCCCATTTATTACGCGCTCAA
CAAGGAATTCCTATTTCAGAATTTGGGGTGTTAGTTGACATGATCAGAGTGCCAGATTGG
GCATTTGAAGCTGCTGGCCAGGAGATGAGAGGGATGGGCCAAGATGCTACTTCATACCAT
CCAGGACTTTATTTGAGCCAAGCTCAGAGAGAAGCAGTGGAGGCACTCATTCAAGAACTT
CCTATGTTCAGGATGAAGGCTGTTCCTACGGACTGCAGTGAGTGCCCTATCTGTTTGGAA
GAATTTGACGTCGGAAATGAGGTCCGTGGTCTCCCTTGTGCTCACAACTTTCATGTTGCG
TGCATTGATGAATGGCTTCGCCTAAACGTAAAATGCCCTAGATGCCGTTGTTCTGTTTTT
CCAAATCTTGATCTCAGTGCTTTGTCAAATATCCGTGCTGATCTAGAAAGATCATCAACC
AACATTGTGACAGCAGCCCGGTATGTGAGATCCCAACCTTCTAGCCAGAGCTATCTGCTG
AGGTTGCAAGGTTTTCTCCGTCCTGTGCGCACAGAGAATGCTGGTCCAAGCAGTGAGGAA
AATGCAGCTGCTCAATCAAGAGTTGAGAACGGAGCCCCAACATCAGCACCTGACAGCGAT
GGAAATGTAGAACATGTTGAAGTCGTGGTGGAGCATTCTCCAAGACAGCTGTAA

Peptide Sequence

PEP ID

Solyc03g114280.3.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *-* AT3G61180.1)
Sequence

MAMRGVDFKWYDGFFLSMLATSIIIVAINWKRYHLCIYPLHIWIVVDYTTVFVFRLLMFV
DNGLAAGMGLDFGWQQRYGRFCGRVAVLSVLALLLYPFLWAWTIIGTLWFTSARNCLPEE
GQKWGFLIWLLFSYCGLMCIACISTGKWLARRQAHLLRAQQGIPISEFGVLVDMIRVPDW
AFEAAGQEMRGMGQDATSYHPGLYLSQAQREAVEALIQELPMFRMKAVPTDCSECPICLE
EFDVGNEVRGLPCAHNFHVACIDEWLRLNVKCPRCRCSVFPNLDLSALSNIRADLERSST
NIVTAARYVRSQPSSQSYLLRLQGFLRPVRTENAGPSSEENAAAQSRVENGAPTSAPDSD
GNVEHVEVVVEHSPRQL*

Transcript Sequence

Transcript ID

Solyc03g114280.3.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *-* AT3G61180.1)
Sequence

GAAAAAAGGCGTGCCAAACGCCACCTAATTAGATAGTCCTATTTCTTCTTCACTTCAACA
CTTCTTCCTCAAAAAAGTAACTTTTTCTTTTCCTCTTTTGTGTCCCTTCAAATCCCTACA
GCAAATTTATATATTTTCTACTCTTAGTTGATGGGTCTTCTGCAGAATCAGCGAATTCAA
AGATTTGACTTCAACAATTTTGCTTGAAATATGAAAAATTGAATTCTTGAATTTCTCTTA
GGGTTCTTGGAAGTTTCTTCAATGGCGATGAGAGGAGTTGATTTTAAATGGTATGATGGG
TTCTTCCTGTCAATGCTGGCTACTAGTATAATCATTGTAGCTATCAACTGGAAAAGGTAC
CATCTTTGTATATACCCATTGCATATCTGGATCGTGGTTGACTATACAACAGTGTTTGTG
TTTCGGCTGTTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGATTGGATTTTGGT
TGGCAGCAGAGATATGGCCGGTTTTGTGGAAGAGTAGCTGTTCTTTCAGTTCTTGCCTTG
CTTCTTTACCCCTTTCTTTGGGCTTGGACCATCATTGGGACGTTATGGTTCACTAGTGCA
AGAAACTGCCTTCCAGAAGAAGGCCAAAAGTGGGGCTTCCTAATATGGTTGCTGTTCAGC
TACTGTGGACTCATGTGCATAGCTTGCATATCGACAGGGAAGTGGTTAGCTAGAAGGCAA
GCCCATTTATTACGCGCTCAACAAGGAATTCCTATTTCAGAATTTGGGGTGTTAGTTGAC
ATGATCAGAGTGCCAGATTGGGCATTTGAAGCTGCTGGCCAGGAGATGAGAGGGATGGGC
CAAGATGCTACTTCATACCATCCAGGACTTTATTTGAGCCAAGCTCAGAGAGAAGCAGTG
GAGGCACTCATTCAAGAACTTCCTATGTTCAGGATGAAGGCTGTTCCTACGGACTGCAGT
GAGTGCCCTATCTGTTTGGAAGAATTTGACGTCGGAAATGAGGTCCGTGGTCTCCCTTGT
GCTCACAACTTTCATGTTGCGTGCATTGATGAATGGCTTCGCCTAAACGTAAAATGCCCT
AGATGCCGTTGTTCTGTTTTTCCAAATCTTGATCTCAGTGCTTTGTCAAATATCCGTGCT
GATCTAGAAAGATCATCAACCAACATTGTGACAGCAGCCCGGTATGTGAGATCCCAACCT
TCTAGCCAGAGCTATCTGCTGAGGTTGCAAGGTTTTCTCCGTCCTGTGCGCACAGAGAAT
GCTGGTCCAAGCAGTGAGGAAAATGCAGCTGCTCAATCAAGAGTTGAGAACGGAGCCCCA
ACATCAGCACCTGACAGCGATGGAAATGTAGAACATGTTGAAGTCGTGGTGGAGCATTCT
CCAAGACAGCTGTAACTATTTGTTCAAATGTTCTAACTTTGCAGGCACTGATAATTTTTG
TCAACCTCTAGCCAATGTTGAGTGTTGTAGTGGCTTCTAACAGTAATTAGATTGCTAAAC
ATTAGTGTATGAGCCGATGGAAGGAAACATCTGTTTTTGGCCTGCTTGTTTTGATGTAAA
TTTTGAAGTGATCACTTTGATGCATTGCGGTGTCCTTAATTCACTTGAATAGAATTCTGT
CTGGCCAATTCACTCCAGACCCA