Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g113870.1.1
CDS Infomation

U-box domain-containing protein 38 (AHRD V3.3 *** W9QMF7_9ROSA)
Sequence

ATGTATTCCCCTTTCAGAAAAGCTAATGGGGATACAGGTAGACATGGCAGAAGCAAATCC
GTCTGGAATATCTTTGTTTACAGGTCATCTTCTAAATTTGATAAAAGGGATCCTCCAAAA
GAACTAATCTGCCCCATTTATGGATGTTTGATGTTTGATCCAGTTGTGGTGTCTACTGGC
CAGAGTTTTGAGAGGACTTCTGTTCAAGTTTGTAAGGATTTGGGGTTTAAACCCCAACTT
CCAGACGGTTTAAACCCGGATTTTACCAACGTGATACCGAATTTAGCTTTGAGGACGACA
ATTCTTACCTGGTGTGAAAAGTCAGGGGCGGAGAAGCCGCAGCAGCCGGATTATTACGTT
GTTGAGTCTGTTGTTCGTGCTTCGATGGCTTCGACTTCTTCTTCTTCGATCTCTAGAGAA
GATTCTAGTATACGGGTGTCTGAGAGGGATTTGTTCAAGGGGGGAACGGAGAATTCACCT
ATGCTTCTCTCTCAAGCCGCATCGGAAATGAAATCGAGGGATAGTCATTTCTACTCTTCT
TCGAGCTCTGAAGAATCTGTTATCGCTAACAACTCGCCGCTACTCCCTTTTAAGACTCGT
CTCTCCAGCTACTCTTCTTCGTCGTCGCAATCGACTTCGTCGGAGATAGTCTCCGGTGAA
GTCCCGTCGTCTGCTTCCACGTCATCGGTAGATGATTATTACGTTGTTCAATTTAAGAAA
TCGGACGTTTATGAACAGGAACAAGCTGTAATTTCACTGAGAAAAAGTACCAGAACCGAT
GAGGAAGCTAGGGTTTCACTGTGCACGCCGCGGCTTTTATCGGCTCTCAAGCCGTTACTG
CTCTCTAGGTACGCCGGAGTTCAGCCAAACGCCGTGGCCGCATTGGTCAACCTCTCGTTG
GCAGATATCAACAAAGTGAAAATTGTTCGAGCCGGAATGACCTCTATGCTAATTGATCTT
CTCAAAAGCGGGTCCGAGGAGACCAAAGAGCACGCAGCCGGTGCTATATTCAGCTTAGCT
CTGGAAGATGACAACAAGACAGCAATTGGAGTGTTGGGCGCATTGCAGCCGCTTTTACAT
GCTCTGAGGTCGGAGACGGAGCGGACTCGTCACGACTCCGCATTAGCCCTTTATCATTTG
ACCTTAGTGCAGAGTAACCGAGTTAAGCTCATCAAACTCGGAGCTGCAAATACACTCCTG
GGATTGCTCAAAGCCAGCGATATGGCGGGTAAAGTAATGCTGGTGCTATGCAATTTAGCA
GTGAGTGAAGAGGGTAAATCAGCATTACTGGACGCCAATGCAGTGGATGTACTGTTGGGG
ATACTGAGAAATTCGAATAAATTGGATGATTCGACTCGGGAGAATTGCGTGGGGGCTTTG
TACTCACTGAGTCAGAAGAGTTTAAGGTTCAAGAGTATGGCGAAAGAGGCGAAGGCGGGT
GAAGTATTGCAAGTGGTGGTGGAGCGAGGAAGCGAACGGGCGAGGGAGAAGGCAAAGAAG
ATGTTGATCGCTATGCAAACAAGGGTAAAGGAGGAGTATGAGGATGAAGAAGAGGAGGTA
AACTGGGAAGGAATACTGGAAGGATGA

Peptide Sequence

PEP ID

Solyc03g113870.1.1
PEP Infomation

U-box domain-containing protein 38 (AHRD V3.3 *** W9QMF7_9ROSA)
Sequence

MYSPFRKANGDTGRHGRSKSVWNIFVYRSSSKFDKRDPPKELICPIYGCLMFDPVVVSTG
QSFERTSVQVCKDLGFKPQLPDGLNPDFTNVIPNLALRTTILTWCEKSGAEKPQQPDYYV
VESVVRASMASTSSSSISREDSSIRVSERDLFKGGTENSPMLLSQAASEMKSRDSHFYSS
SSSEESVIANNSPLLPFKTRLSSYSSSSSQSTSSEIVSGEVPSSASTSSVDDYYVVQFKK
SDVYEQEQAVISLRKSTRTDEEARVSLCTPRLLSALKPLLLSRYAGVQPNAVAALVNLSL
ADINKVKIVRAGMTSMLIDLLKSGSEETKEHAAGAIFSLALEDDNKTAIGVLGALQPLLH
ALRSETERTRHDSALALYHLTLVQSNRVKLIKLGAANTLLGLLKASDMAGKVMLVLCNLA
VSEEGKSALLDANAVDVLLGILRNSNKLDDSTRENCVGALYSLSQKSLRFKSMAKEAKAG
EVLQVVVERGSERAREKAKKMLIAMQTRVKEEYEDEEEEVNWEGILEG*

Transcript Sequence

Transcript ID

Solyc03g113870.1.1
Transcript Infomation

U-box domain-containing protein 38 (AHRD V3.3 *** W9QMF7_9ROSA)
Sequence

ATGTATTCCCCTTTCAGAAAAGCTAATGGGGATACAGGTAGACATGGCAGAAGCAAATCC
GTCTGGAATATCTTTGTTTACAGGTCATCTTCTAAATTTGATAAAAGGGATCCTCCAAAA
GAACTAATCTGCCCCATTTATGGATGTTTGATGTTTGATCCAGTTGTGGTGTCTACTGGC
CAGAGTTTTGAGAGGACTTCTGTTCAAGTTTGTAAGGATTTGGGGTTTAAACCCCAACTT
CCAGACGGTTTAAACCCGGATTTTACCAACGTGATACCGAATTTAGCTTTGAGGACGACA
ATTCTTACCTGGTGTGAAAAGTCAGGGGCGGAGAAGCCGCAGCAGCCGGATTATTACGTT
GTTGAGTCTGTTGTTCGTGCTTCGATGGCTTCGACTTCTTCTTCTTCGATCTCTAGAGAA
GATTCTAGTATACGGGTGTCTGAGAGGGATTTGTTCAAGGGGGGAACGGAGAATTCACCT
ATGCTTCTCTCTCAAGCCGCATCGGAAATGAAATCGAGGGATAGTCATTTCTACTCTTCT
TCGAGCTCTGAAGAATCTGTTATCGCTAACAACTCGCCGCTACTCCCTTTTAAGACTCGT
CTCTCCAGCTACTCTTCTTCGTCGTCGCAATCGACTTCGTCGGAGATAGTCTCCGGTGAA
GTCCCGTCGTCTGCTTCCACGTCATCGGTAGATGATTATTACGTTGTTCAATTTAAGAAA
TCGGACGTTTATGAACAGGAACAAGCTGTAATTTCACTGAGAAAAAGTACCAGAACCGAT
GAGGAAGCTAGGGTTTCACTGTGCACGCCGCGGCTTTTATCGGCTCTCAAGCCGTTACTG
CTCTCTAGGTACGCCGGAGTTCAGCCAAACGCCGTGGCCGCATTGGTCAACCTCTCGTTG
GCAGATATCAACAAAGTGAAAATTGTTCGAGCCGGAATGACCTCTATGCTAATTGATCTT
CTCAAAAGCGGGTCCGAGGAGACCAAAGAGCACGCAGCCGGTGCTATATTCAGCTTAGCT
CTGGAAGATGACAACAAGACAGCAATTGGAGTGTTGGGCGCATTGCAGCCGCTTTTACAT
GCTCTGAGGTCGGAGACGGAGCGGACTCGTCACGACTCCGCATTAGCCCTTTATCATTTG
ACCTTAGTGCAGAGTAACCGAGTTAAGCTCATCAAACTCGGAGCTGCAAATACACTCCTG
GGATTGCTCAAAGCCAGCGATATGGCGGGTAAAGTAATGCTGGTGCTATGCAATTTAGCA
GTGAGTGAAGAGGGTAAATCAGCATTACTGGACGCCAATGCAGTGGATGTACTGTTGGGG
ATACTGAGAAATTCGAATAAATTGGATGATTCGACTCGGGAGAATTGCGTGGGGGCTTTG
TACTCACTGAGTCAGAAGAGTTTAAGGTTCAAGAGTATGGCGAAAGAGGCGAAGGCGGGT
GAAGTATTGCAAGTGGTGGTGGAGCGAGGAAGCGAACGGGCGAGGGAGAAGGCAAAGAAG
ATGTTGATCGCTATGCAAACAAGGGTAAAGGAGGAGTATGAGGATGAAGAAGAGGAGGTA
AACTGGGAAGGAATACTGGAAGGATGA