Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g097550.3.1
CDS Infomation

Pseudouridine synthase (AHRD V3.3 *** K4BJH2_SOLLC)
Sequence

ATGAATACGAAGAGGAAGCGAGAGGATATGGAGATTGTGTGGCAAACTCCGGCCAACCCA
CCGGAACGCCATGACTACATCTTCCGTAATGGAGTACGCTATGTTAAGCCTTACTACTTC
GAATTCATCTCCCATGTGAAGAATAGGTGGGCTGGAAAGACAATTGTTGATCTCTTCTCT
GATGAATTTAAAGGAAGACCTCGTGATTACTATGAATCTGCCGTTAAGTCTGGACGTATA
CAAGTTGATGGACGAAAGGTGTCTGTTTCATATGTAGTTCAGTCATCACAAAAAATTAGC
CATTTCCTGCACAGGCATGAACCACCAGTGATGTCGTGGGATGTCGAAATACTATGTGAA
GAACCAGATGTGCTAACAGTTTGCAAGCCTGCTTCTGTTCCTGTGCATCCATGTGGACAA
TACCGCAAGAATACGGTCGTTGGTATACTACAAGCCGAGTATGGCCTGGCACCTTTATTT
CCGGTTCATCGCCTAGATCGCTTGGTCTCAGGACTACTTATTTTGGCTAGGAGTGCTTCT
AGGGCTGACCTCTTCAGGCAACAGATAGAATCAGGGGTAGTGCAGAAACGGTATATTGCA
AGAGTAATAGGAGTATTCCCAGAGAAGCAGCAAGTTGTGAATGCTAATGTCAATTACAAT
GCTCGAGAAGGGAGGAGCACAGTTGAGGTGGGGGATAACCAGGGAAATAGTACTGCTTCA
CTGAAGGGGAAGGCTGCCTGTACGAAATTTACAAGGATTAGTACCAATGGGAAGCAAAGC
ATCGTTTTGTGCGAACCCGTGACTGGCAGGACACATCAGATACGTGTGCATCTGCAATAT
ACAGGTCATCCAATAGCCAATGATATGCTCTATATGTCTGAATTTGTGTCTAGTCGCGCT
GCTGAAGGATTGAGCGCGGATAGAGCTGCAGCAAAATCATGTTCTCCTCCAGATCCCATC
TCTCGAACTAGTGACATGGAAAATGACTCTAATGAAGATTTCAGCATTGATCCTATGTGT
ACAAATTGTCCAAATCTTGCTCCGAAAGGGTATGAGGGTAATGAAGAGGGTCTATGGCTG
CATTGTGTAAAATATTCGGGACCTGACTGGATATATGAATGTCCACATCCAGATTGGGCA
TCTTTAAGTTGA

Peptide Sequence

PEP ID

Solyc03g097550.3.1
PEP Infomation

Pseudouridine synthase (AHRD V3.3 *** K4BJH2_SOLLC)
Sequence

MNTKRKREDMEIVWQTPANPPERHDYIFRNGVRYVKPYYFEFISHVKNRWAGKTIVDLFS
DEFKGRPRDYYESAVKSGRIQVDGRKVSVSYVVQSSQKISHFLHRHEPPVMSWDVEILCE
EPDVLTVCKPASVPVHPCGQYRKNTVVGILQAEYGLAPLFPVHRLDRLVSGLLILARSAS
RADLFRQQIESGVVQKRYIARVIGVFPEKQQVVNANVNYNAREGRSTVEVGDNQGNSTAS
LKGKAACTKFTRISTNGKQSIVLCEPVTGRTHQIRVHLQYTGHPIANDMLYMSEFVSSRA
AEGLSADRAAAKSCSPPDPISRTSDMENDSNEDFSIDPMCTNCPNLAPKGYEGNEEGLWL
HCVKYSGPDWIYECPHPDWASLS*

Transcript Sequence

Transcript ID

Solyc03g097550.3.1
Transcript Infomation

Pseudouridine synthase (AHRD V3.3 *** K4BJH2_SOLLC)
Sequence

TTATGATAAATGAAATGAATTACCAAAAAGTGAAAAAAGAAAAACAAACACTGGTACCAA
AATAGAAAATACTAGTACAAAATTTGGATTGATTTTCACAGTAATAAAATTTGGGAGGTT
ACCGTTCACCAATAACATGAATACGAAGAGGAAGCGAGAGGATATGGAGATTGTGTGGCA
AACTCCGGCCAACCCACCGGAACGCCATGACTACATCTTCCGTAATGGAGTACGCTATGT
TAAGCCTTACTACTTCGAATTCATCTCCCATGTGAAGAATAGGTGGGCTGGAAAGACAAT
TGTTGATCTCTTCTCTGATGAATTTAAAGGAAGACCTCGTGATTACTATGAATCTGCCGT
TAAGTCTGGACGTATACAAGTTGATGGACGAAAGGTGTCTGTTTCATATGTAGTTCAGTC
ATCACAAAAAATTAGCCATTTCCTGCACAGGCATGAACCACCAGTGATGTCGTGGGATGT
CGAAATACTATGTGAAGAACCAGATGTGCTAACAGTTTGCAAGCCTGCTTCTGTTCCTGT
GCATCCATGTGGACAATACCGCAAGAATACGGTCGTTGGTATACTACAAGCCGAGTATGG
CCTGGCACCTTTATTTCCGGTTCATCGCCTAGATCGCTTGGTCTCAGGACTACTTATTTT
GGCTAGGAGTGCTTCTAGGGCTGACCTCTTCAGGCAACAGATAGAATCAGGGGTAGTGCA
GAAACGGTATATTGCAAGAGTAATAGGAGTATTCCCAGAGAAGCAGCAAGTTGTGAATGC
TAATGTCAATTACAATGCTCGAGAAGGGAGGAGCACAGTTGAGGTGGGGGATAACCAGGG
AAATAGTACTGCTTCACTGAAGGGGAAGGCTGCCTGTACGAAATTTACAAGGATTAGTAC
CAATGGGAAGCAAAGCATCGTTTTGTGCGAACCCGTGACTGGCAGGACACATCAGATACG
TGTGCATCTGCAATATACAGGTCATCCAATAGCCAATGATATGCTCTATATGTCTGAATT
TGTGTCTAGTCGCGCTGCTGAAGGATTGAGCGCGGATAGAGCTGCAGCAAAATCATGTTC
TCCTCCAGATCCCATCTCTCGAACTAGTGACATGGAAAATGACTCTAATGAAGATTTCAG
CATTGATCCTATGTGTACAAATTGTCCAAATCTTGCTCCGAAAGGGTATGAGGGTAATGA
AGAGGGTCTATGGCTGCATTGTGTAAAATATTCGGGACCTGACTGGATATATGAATGTCC
ACATCCAGATTGGGCATCTTTAAGTTGATATGCACTTTCAACATTCATTAGGTCTGATTT
CAGAACTTTGTTATTCTCTTGGTGCTTTGTGTCTTGTGCTCTGTTCATTCTTGTGCAGCG
GTATGCACTGTGTCCTGGTAAACTCCTGGAGTTCTGGGAATTTCTTACCGGGGAGGCACC
CATACAGTGTTTTGGTTGGATTGGCTACTTTGAATTTGGATTTACGGGAGGGGCTAGCTC
TCGTATGCCTTATGAGTTCAATTGGTTTAAAAACAAGTGTTTGCAGCAATTTTGAAACAA
TTAATGGACGTCGTCTGTGATTGGCTGAGGTGATTTTGTTTCACCTTCTTAATTTATTGG
ATTACGGAGAATCTACCCTTTTGTTTGTAAAACAGCATCACGTTGTCTTCGGCAGTTATT
GTTGACTGGTTTCTGTTGTAAAATTGCAATATCAGGAAACAATCCTTATTTTACTTTCTA
TGAGTTTCCATCTATTGTTTTGTTTGGTTACATTTTCTTTTTTTGAAGTTTCTTTTTGTT
TAGTTGATTAGATCTAAAAGATTAACTCAATAGTGAAAGCGACTATATGAATTGAAATGG
CTGCTGCTTTGCGAAGAGCTTGTACGTGACGCTGGAAGAGGAGTACATGGTAATATTTTT
GTTACAGGAGATGGTGTTTTAAGTTGGTTAAAATAGCTCCTGGAACAAGTTTCCGTTTTA
ATGTTCAGTCTATTTAAGTTAAATGATTATGTTAGGTATTTATAATTTTACCCCACATAT
GTCATCATCTTGTCACTTTCAGTCCTCAAGTTATGCCTTTTTGTCCATATTCAGATGAGA
ATTGGTAAAAAAAAAAAAATCTAACTGCAACAATCATTTTCAATCATCAACAAAAAATTC
TCCTTAGTTAACCCTAAGTTATAGAATTAGTCTAGCTGCAGTCCTTTATGACCAGTTCTG
TTTTTTTTCACCAGTAACAAACGCAAGCGCCA