Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g097320.3.1
CDS Infomation

Sigma factor (AHRD V3.3 *** Q9SLX4_TOBAC)
Sequence

ATGATGGCCACAACAGCAGTTATTGGACTGAGTGCAGGAAAAAGACTCTTGAGTTCTTCC
TTCTATTATTCTGATCTTAATGAAAAGCTATCTTGTAGTAGTGATCATAGTTTGCCCTGC
CATCAGGTTCCTACTGTTAAAAATGTGATCTCCGCTAAGAAGTCATCCGATTATAGCCCC
AGTTGTGTATCCAGTCGAAAACTACAATCTGTCAAGGCTCTTAAAGAGCATGTAGACATT
GCATCCGACCCTTCTGATGTGCAGTCCTGGTTTGAAAGGTTCGAACAATTGCAAAATGAA
AGTGATGACGAGGAGGATGATTCGGTGGAGGTTCTACTCTTGCTGCAGAAGTCCATGCTT
GAAAAGCAGTGGAATCTTTCTGCTGAAGAGACATTGACTGCTTCTACACAACGCAAAAAG
AATTGTAAGAAGATGCATATTGCTTGCTCAGGGACGTCTGCTAGGCGGAGGAGAATGGAT
TCTCGACAAAGAGTTCTTGCTCAAAAAAGTTCAGCTACACCTATAAGTGCAACCAAGCCA
CTGAGGTCAATACTTGGTCCAGATCTACTTCAAAATCGTTTAAAAGGTTACGTTAAGGGT
ATAGTAAGTGAAGAGCTGCTCACACACACTGAAGTGCTTCAACTATCCAAAAAGATTAAA
GTTGGTCTTCATGTGGAAGAGCAAAAATCAAGGCTGAAGGAAAGACTGGGATGTGAGCCT
TCTGATGATCAACTTGCTGTTTCCTTGAAAATGTCCCGTACTGATTTGCAATCTACATTG
ATCGAGTGTTCCTTGGCAAGAGAAAGGCTTTCAATGAGCAATGTTCGTCTTGTCATGTCA
ATCGCTCAAAGATATGATAATATGGGTGCTGAAATGGCTGATCTCGTTCAGGGAGGCCTT
ATTGGACTACTTCGTGGGATAGAGAAATTTGATCCCTCTAAAGGATACAAAATCTCAACT
TATGTTTATTGGTGGATTCGCCAGGGTGTCTCCAGAACCCTGGTTGAGAATTCGAGAACC
TTAAGATTGCCAACACATCTGCATGAAAGACTCGGTCTAATCCGTAATGCAAAGATGAGG
CTTGAAGAGAAGGGAATAAATCCATCTGTAAATAATATAGCCGCATCCCTAAATATGTCC
CAGAAGAAAGTCAGGAATGCAACTGAGGCAAGCAGCAAGGTGTATTCACTTGACAGGGAA
GTGTTTCCCTCTTTAAACGGTCTGCCCGGAACAACTCTCCATAGTTACATCGCTGATAAC
CACCTGGAGAACAACCCATGGCACGGTGTTGATGTATGGGCACTCAAGGATGAAGTAAAC
AACCTCATTTCATCAACTCTTAGGGAACGAGAGAGAGAAATTATCCGACTGTACTATGGT
CTGGACAGTGAATGTCTCACGTGGGAAGATATTAGTAAAAGGATAGGCTTGTCCAGAGAG
AGGGTCAGGCAGGTTGGATTAGTTGCACTTGAGAAACTAAAACATGCTGCAAGGAAAAGG
CGACTAGACGCAATGTTGATCAAACAGTAA

Peptide Sequence

PEP ID

Solyc03g097320.3.1
PEP Infomation

Sigma factor (AHRD V3.3 *** Q9SLX4_TOBAC)
Sequence

MMATTAVIGLSAGKRLLSSSFYYSDLNEKLSCSSDHSLPCHQVPTVKNVISAKKSSDYSP
SCVSSRKLQSVKALKEHVDIASDPSDVQSWFERFEQLQNESDDEEDDSVEVLLLLQKSML
EKQWNLSAEETLTASTQRKKNCKKMHIACSGTSARRRRMDSRQRVLAQKSSATPISATKP
LRSILGPDLLQNRLKGYVKGIVSEELLTHTEVLQLSKKIKVGLHVEEQKSRLKERLGCEP
SDDQLAVSLKMSRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQGGL
IGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNAKMR
LEEKGINPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGTTLHSYIADN
HLENNPWHGVDVWALKDEVNNLISSTLREREREIIRLYYGLDSECLTWEDISKRIGLSRE
RVRQVGLVALEKLKHAARKRRLDAMLIKQ*

Transcript Sequence

Transcript ID

Solyc03g097320.3.1
Transcript Infomation

Sigma factor (AHRD V3.3 *** Q9SLX4_TOBAC)
Sequence

TAAATAATGTCATTTAAAAGAAAAAATATAGACAAGTAAATAAGAGCGGAGGGAGCACCT
AAACTTAGTCAGTCTAGAATCGTTGATGGGGAATAAGACGAGAAAGTTTTAAAAAGAGAA
AGGAAGAGGTAGAAGTAGGCCACAAGAAGTGGGACCCGTATATCTATTTGAACCAATGAC
AATTGATCTCTAATATCCAAAAACTTAAATACACATTGATCTCCTCTCGCGTTATTTTCA
TTTTCCTCCCATCAGTTTATTATCAACAAAAAAAAAAAGTGTTTTAACAATATCATTTCT
GTTGCAAGATAAACAAAGGAAATAAAGCCATAGCAGTGAAACAAATGAGACGATAAGTAG
TAGTGAAGCAAATGAAGCTGGCCTGGACTACAAGCTAGAAAAAAAAATTGTATTTTAACT
CTTCTTCCTCCTAATAAAAAAGTGATTGAGGAGATTAGTCAGCATATAAACTTGGTCATA
ACCTGATATTGTTGTAATTCAATCTTCCTTGTAAGACGACGCGTGATGGTCTTGGATTGT
TAGAAAGGGATAGCCCTCATGATGGCCACAACAGCAGTTATTGGACTGAGTGCAGGAAAA
AGACTCTTGAGTTCTTCCTTCTATTATTCTGATCTTAATGAAAAGCTATCTTGTAGTAGT
GATCATAGTTTGCCCTGCCATCAGGTTCCTACTGTTAAAAATGTGATCTCCGCTAAGAAG
TCATCCGATTATAGCCCCAGTTGTGTATCCAGTCGAAAACTACAATCTGTCAAGGCTCTT
AAAGAGCATGTAGACATTGCATCCGACCCTTCTGATGTGCAGTCCTGGTTTGAAAGGTTC
GAACAATTGCAAAATGAAAGTGATGACGAGGAGGATGATTCGGTGGAGGTTCTACTCTTG
CTGCAGAAGTCCATGCTTGAAAAGCAGTGGAATCTTTCTGCTGAAGAGACATTGACTGCT
TCTACACAACGCAAAAAGAATTGTAAGAAGATGCATATTGCTTGCTCAGGGACGTCTGCT
AGGCGGAGGAGAATGGATTCTCGACAAAGAGTTCTTGCTCAAAAAAGTTCAGCTACACCT
ATAAGTGCAACCAAGCCACTGAGGTCAATACTTGGTCCAGATCTACTTCAAAATCGTTTA
AAAGGTTACGTTAAGGGTATAGTAAGTGAAGAGCTGCTCACACACACTGAAGTGCTTCAA
CTATCCAAAAAGATTAAAGTTGGTCTTCATGTGGAAGAGCAAAAATCAAGGCTGAAGGAA
AGACTGGGATGTGAGCCTTCTGATGATCAACTTGCTGTTTCCTTGAAAATGTCCCGTACT
GATTTGCAATCTACATTGATCGAGTGTTCCTTGGCAAGAGAAAGGCTTTCAATGAGCAAT
GTTCGTCTTGTCATGTCAATCGCTCAAAGATATGATAATATGGGTGCTGAAATGGCTGAT
CTCGTTCAGGGAGGCCTTATTGGACTACTTCGTGGGATAGAGAAATTTGATCCCTCTAAA
GGATACAAAATCTCAACTTATGTTTATTGGTGGATTCGCCAGGGTGTCTCCAGAACCCTG
GTTGAGAATTCGAGAACCTTAAGATTGCCAACACATCTGCATGAAAGACTCGGTCTAATC
CGTAATGCAAAGATGAGGCTTGAAGAGAAGGGAATAAATCCATCTGTAAATAATATAGCC
GCATCCCTAAATATGTCCCAGAAGAAAGTCAGGAATGCAACTGAGGCAAGCAGCAAGGTG
TATTCACTTGACAGGGAAGTGTTTCCCTCTTTAAACGGTCTGCCCGGAACAACTCTCCAT
AGTTACATCGCTGATAACCACCTGGAGAACAACCCATGGCACGGTGTTGATGTATGGGCA
CTCAAGGATGAAGTAAACAACCTCATTTCATCAACTCTTAGGGAACGAGAGAGAGAAATT
ATCCGACTGTACTATGGTCTGGACAGTGAATGTCTCACGTGGGAAGATATTAGTAAAAGG
ATAGGCTTGTCCAGAGAGAGGGTCAGGCAGGTTGGATTAGTTGCACTTGAGAAACTAAAA
CATGCTGCAAGGAAAAGGCGACTAGACGCAATGTTGATCAAACAGTAATTTAAAGCATTT
GCAGAGACCATAATACGATTTGACTGTACATATAATGTGAGAATCTTGCATCTCCGACTT
ATTTTTATGAGGAGAACGTACAGATGAAGAACCCGATACATTCTTGCCCACCCCTCTCCG
CGAAACCAAGCTCCCAAATATGTATGTGCAGAGACAGAATGTAGACGACATTTTTTTGTA
CCATATATTATAGGATGCATGACGTGCAAAGAGCAAAGAAGAGATTGTTTGCTGACATAG
TAGACAAATGTTGTAATCTGTAGGTATATTCTACATTTTTATGTGTTTCCACTTGATGTG
ATACTGATTGATTATTTCTGGTAAGACAACATGTATACTTCCCTTTTCATTCTTACTACA
GTACTACCATCTAAATCTCAAGCACCATATCAAAGA