Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g095200.1.1
CDS Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RD38_RICCO)
Sequence

ATGGCGATTGTTCCTTTTTCTTCAGTAACAGCCATCTTAAGATACCGCTTTTTCTCTACT
CTTGTTCAGATTTTCTCCGAACCCACCACCAAGACCAAAAATGGCAAAAATACCAAGCCG
AAATCATCTTCTTCGAAATCCAAGAAAGCTAGAAAAATTGCCACTATCATCAATACAAAC
CCATGGTCATCTCATCTTGAATCTTCTCTTTCCTCTATCACTCAACCCTCCCTCTCTCAC
ACCACTGTCCTTCACACACTCCGATTCATCAAAATACCTTCCAAAGCTCTGTACTTCTTC
AACTGGACTCAAAAAATGGGTTTTCAACACACCCATCAGTCCTATTTGCTCATGTTGCAA
CTCCTCGGGAGTTCCCGCAGCTTAAATTCAGCAAGGAACTTTCTTTTATCTATACCCAGA
AGGTCGAATGGTGCTGTACCGCTTCAAGATAGGTACTTTAACACTTTGATTCAAAGTTAT
GGTAAAGCTGGGCTTTTTCAAGAATCATTGAAGGTGTTTAAAGTGATGAAGTCACTTGGA
ATTTCACCCTCTGTTGTTACGTTCAATAGTTTGTTTACAATTTTGCTCAAGAGGGGTCGA
ACTGGTATGGTTTACGAACTGTTTGATGAAATGCTTAAGACATTTGGTGCCAAGCCTGAT
GTGTATACTTTTAACATTTTGATTAGAGGATTTTGTATAAACTCCATGGTTGATAAAGGA
TTTAGGTTTTTTAAGGAGATGGAAAGGCATGAATGTGAACCAAATGTCATTACATACAAT
ACCATCGTTGATGGTTTGTGTAGGGCAGGGAAAGTGGAGATTGCACATAACGTGTTAAAG
GGTATGGCCAAGAGGGGTCATCAATTGAGTCCTAATGTTGTAAGCTACACCACTTTGGTT
AGAGGGTATTGTGAGAAGCAAGAGGTTGAACGGGCTCTTGATGTTTTTGAGGAAATGATA
GATCGTGGTCTTAAACCGACCAGTATAACTTATAATACTCTTGTACAAGGTCTTTGTGAG
GCTAAAAGATTTGACAGAATAAAGGAGATCTTGGAGGGTACTCTAGGAAGTGGAGGACTT
ATTCCAGATACATGTACTTTCAATACATTGATTACCTATCACTGTAATGTGGGAAATCTG
GATGAAGCAGTGAAAGTTTTTGAGAATATGTTATACTTAAAGGTGAAACCTGATTCAGCA
ACATATAGCATCCTAATACGGAGCTTTTGTCAAAAGGGATACTTTGATAGGGCAGAGAAA
TTATTTGATGATCTAATGAAGAAGGAGGTATTGCTCCGTGATGATGGCTGTACACCTCTC
ATTGCAGCATACAATCCCATGTTTGAGTATTTCTGCAAGATTGGCAAGACAAAGAAGGCT
GAGAAAGTATTTAGGCAACTAATGAGGAGAGGAACTCAGGATCCTTTTGCTTATGAACTC
CTGATCAGGGGGCATTGTAAAGAAGGCACATTTAATGATGCACATGGACTCTTAGTTTTG
ATGTTGAGGAGAGATTATGTACCTAATATTGTGATTTATGAGTCCCTAATTGAAGGTTTG
CTGCAAAAGAATGATCCTAAAGTTGCTTACGATACTCTAGAGAAGATGTTGAAAAGCTCC
CATCTTCCAAGATCTTCGATTTATCATCAAATCCTTACAGAACTTATCAAGAAAAATTGT
GCAAGTGAGTGTGCTTCCTTGGTGACACTAATGTTAGATAACAAAGTTAGACAAAACATC
AATCTTTCAACTGATACTGTGAAGATACTCTTCCAAACAGGATTAAGGGAGAGAGCTTTT
GAGATTGTAAGGTGCCTTTATGAAAATGAATACGTGGTAGATATGGAAGGTTTAGTTGCT
TTCCTTTGCCAGCGTAGAAAGTTATTGGAGGCATGCAAATTATTGTTATTTAGCTTAAGT
AAGGGTCATATTCTGAATGTAGATACATGCAGTACTCTTTTATCTGCTCTCTGCAAAGCA
CGTAGAGCTTCAGAAGCATTTGAGATTTACTATGAGTTGCTTGAGAAAGGAGTCCAACAA
CCTTTAGAATGCATAGAAGAGTTGGGGCTTGCTCTTGAAACTGAAGGAAGAATTAAGGAA
GCTGAATTTGTTAAAAAGAGAATCCCAGGCTAA

Peptide Sequence

PEP ID

Solyc03g095200.1.1
PEP Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RD38_RICCO)
Sequence

MAIVPFSSVTAILRYRFFSTLVQIFSEPTTKTKNGKNTKPKSSSSKSKKARKIATIINTN
PWSSHLESSLSSITQPSLSHTTVLHTLRFIKIPSKALYFFNWTQKMGFQHTHQSYLLMLQ
LLGSSRSLNSARNFLLSIPRRSNGAVPLQDRYFNTLIQSYGKAGLFQESLKVFKVMKSLG
ISPSVVTFNSLFTILLKRGRTGMVYELFDEMLKTFGAKPDVYTFNILIRGFCINSMVDKG
FRFFKEMERHECEPNVITYNTIVDGLCRAGKVEIAHNVLKGMAKRGHQLSPNVVSYTTLV
RGYCEKQEVERALDVFEEMIDRGLKPTSITYNTLVQGLCEAKRFDRIKEILEGTLGSGGL
IPDTCTFNTLITYHCNVGNLDEAVKVFENMLYLKVKPDSATYSILIRSFCQKGYFDRAEK
LFDDLMKKEVLLRDDGCTPLIAAYNPMFEYFCKIGKTKKAEKVFRQLMRRGTQDPFAYEL
LIRGHCKEGTFNDAHGLLVLMLRRDYVPNIVIYESLIEGLLQKNDPKVAYDTLEKMLKSS
HLPRSSIYHQILTELIKKNCASECASLVTLMLDNKVRQNINLSTDTVKILFQTGLRERAF
EIVRCLYENEYVVDMEGLVAFLCQRRKLLEACKLLLFSLSKGHILNVDTCSTLLSALCKA
RRASEAFEIYYELLEKGVQQPLECIEELGLALETEGRIKEAEFVKKRIPG*

Transcript Sequence

Transcript ID

Solyc03g095200.1.1
Transcript Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RD38_RICCO)
Sequence

ATGGCGATTGTTCCTTTTTCTTCAGTAACAGCCATCTTAAGATACCGCTTTTTCTCTACT
CTTGTTCAGATTTTCTCCGAACCCACCACCAAGACCAAAAATGGCAAAAATACCAAGCCG
AAATCATCTTCTTCGAAATCCAAGAAAGCTAGAAAAATTGCCACTATCATCAATACAAAC
CCATGGTCATCTCATCTTGAATCTTCTCTTTCCTCTATCACTCAACCCTCCCTCTCTCAC
ACCACTGTCCTTCACACACTCCGATTCATCAAAATACCTTCCAAAGCTCTGTACTTCTTC
AACTGGACTCAAAAAATGGGTTTTCAACACACCCATCAGTCCTATTTGCTCATGTTGCAA
CTCCTCGGGAGTTCCCGCAGCTTAAATTCAGCAAGGAACTTTCTTTTATCTATACCCAGA
AGGTCGAATGGTGCTGTACCGCTTCAAGATAGGTACTTTAACACTTTGATTCAAAGTTAT
GGTAAAGCTGGGCTTTTTCAAGAATCATTGAAGGTGTTTAAAGTGATGAAGTCACTTGGA
ATTTCACCCTCTGTTGTTACGTTCAATAGTTTGTTTACAATTTTGCTCAAGAGGGGTCGA
ACTGGTATGGTTTACGAACTGTTTGATGAAATGCTTAAGACATTTGGTGCCAAGCCTGAT
GTGTATACTTTTAACATTTTGATTAGAGGATTTTGTATAAACTCCATGGTTGATAAAGGA
TTTAGGTTTTTTAAGGAGATGGAAAGGCATGAATGTGAACCAAATGTCATTACATACAAT
ACCATCGTTGATGGTTTGTGTAGGGCAGGGAAAGTGGAGATTGCACATAACGTGTTAAAG
GGTATGGCCAAGAGGGGTCATCAATTGAGTCCTAATGTTGTAAGCTACACCACTTTGGTT
AGAGGGTATTGTGAGAAGCAAGAGGTTGAACGGGCTCTTGATGTTTTTGAGGAAATGATA
GATCGTGGTCTTAAACCGACCAGTATAACTTATAATACTCTTGTACAAGGTCTTTGTGAG
GCTAAAAGATTTGACAGAATAAAGGAGATCTTGGAGGGTACTCTAGGAAGTGGAGGACTT
ATTCCAGATACATGTACTTTCAATACATTGATTACCTATCACTGTAATGTGGGAAATCTG
GATGAAGCAGTGAAAGTTTTTGAGAATATGTTATACTTAAAGGTGAAACCTGATTCAGCA
ACATATAGCATCCTAATACGGAGCTTTTGTCAAAAGGGATACTTTGATAGGGCAGAGAAA
TTATTTGATGATCTAATGAAGAAGGAGGTATTGCTCCGTGATGATGGCTGTACACCTCTC
ATTGCAGCATACAATCCCATGTTTGAGTATTTCTGCAAGATTGGCAAGACAAAGAAGGCT
GAGAAAGTATTTAGGCAACTAATGAGGAGAGGAACTCAGGATCCTTTTGCTTATGAACTC
CTGATCAGGGGGCATTGTAAAGAAGGCACATTTAATGATGCACATGGACTCTTAGTTTTG
ATGTTGAGGAGAGATTATGTACCTAATATTGTGATTTATGAGTCCCTAATTGAAGGTTTG
CTGCAAAAGAATGATCCTAAAGTTGCTTACGATACTCTAGAGAAGATGTTGAAAAGCTCC
CATCTTCCAAGATCTTCGATTTATCATCAAATCCTTACAGAACTTATCAAGAAAAATTGT
GCAAGTGAGTGTGCTTCCTTGGTGACACTAATGTTAGATAACAAAGTTAGACAAAACATC
AATCTTTCAACTGATACTGTGAAGATACTCTTCCAAACAGGATTAAGGGAGAGAGCTTTT
GAGATTGTAAGGTGCCTTTATGAAAATGAATACGTGGTAGATATGGAAGGTTTAGTTGCT
TTCCTTTGCCAGCGTAGAAAGTTATTGGAGGCATGCAAATTATTGTTATTTAGCTTAAGT
AAGGGTCATATTCTGAATGTAGATACATGCAGTACTCTTTTATCTGCTCTCTGCAAAGCA
CGTAGAGCTTCAGAAGCATTTGAGATTTACTATGAGTTGCTTGAGAAAGGAGTCCAACAA
CCTTTAGAATGCATAGAAGAGTTGGGGCTTGCTCTTGAAACTGAAGGAAGAATTAAGGAA
GCTGAATTTGTTAAAAAGAGAATCCCAGGCTAA