Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g094160.3.1
CDS Infomation

metacaspase 1 (AHRD V3.3 *** AT1G02170.1),Pfam:PF00656
Sequence

ATGATGATGCTTGTCAATTGTTCCAAGTGTCACACCCCCTTACAACTCCCACCAGGTGCA
AAGTCCATTCGCTGCGCCATCTGCAGAGCCATCACACTAATTGCTGATCCTCACGCTGCT
CCGCCAACACCCCCTTCCGCTTACAATAACCACTACTATCCCCCTTCTTCTCCTTCTCCT
GCTCTTGCTCCATCTACTTATAGTTCCGGTCAAAATTCATCGTCACGAAAGAGGGCGGTC
ATCGTAGGTATTTCGTATACGAATACGAGGAATGAACTGAAGGGATGTATTAATGATGCT
AAATGTATGAAATTTTTGCTCACCAATCGATTCAACTTTCCTCAAGACTCTATTCTCATG
CTTACTGAAGAAGAGAGGGATCCATACAGAATACCGACAAAACATAACATAAGAATGGCG
ATGTACTGGCTTATGCAAGGTTGTCAAGCAGGGGATTCTCTGGTGTTCCATTATTCTGGT
CATGGTTCACAACAAAGAAATTACACCGGAGATGAAGTTGATGGGTTCGATGAAACACTT
TGTCCGTTGGATTTTGAAACCCAAGGAATGATTGTTGATGATGAAATTAATGCAACACTT
GTTAGGCCTCTTCCGCGTGGAGCTAAGCTTCATGCTATTATAGATGCTTGTCACAGTGGT
ACTATGCTTGACCTACCGTTTCTTTGTAGGATGGACAGGACTGGACGATATGTATGGGAA
GATCATCGTCCTCGATCAGGAGCATGGAAAGGAACAAGTGGGGGAGAGGTCATATCCTTC
AGCGGTTGTGATGATGATCAAATCTCTGCTGATACGGATAATTTGTCCAAGGTCACTTCA
ACTGGTGCAATGACGTTTTCCTTCATCCAAGCAATCGAGCAAGGAAAAGGAACTACATAT
GGAGGTATTCTAAATGCAATGAGATCTGCCATTCGCAGTTCTGATAATGGTGTAGGAGCT
GGCATTGTGACATCGCTATTGACTATGCTGATCACTGGAGGAAGTGCTGGCATTGGAATG
AGACAGGAGCCACAATTGACAGCAAATGAACCATTTGATGTGTACACCAAGCCATTTTCA
TTGTAG

Peptide Sequence

PEP ID

Solyc03g094160.3.1
PEP Infomation

metacaspase 1 (AHRD V3.3 *** AT1G02170.1),Pfam:PF00656
Sequence

MMMLVNCSKCHTPLQLPPGAKSIRCAICRAITLIADPHAAPPTPPSAYNNHYYPPSSPSP
ALAPSTYSSGQNSSSRKRAVIVGISYTNTRNELKGCINDAKCMKFLLTNRFNFPQDSILM
LTEEERDPYRIPTKHNIRMAMYWLMQGCQAGDSLVFHYSGHGSQQRNYTGDEVDGFDETL
CPLDFETQGMIVDDEINATLVRPLPRGAKLHAIIDACHSGTMLDLPFLCRMDRTGRYVWE
DHRPRSGAWKGTSGGEVISFSGCDDDQISADTDNLSKVTSTGAMTFSFIQAIEQGKGTTY
GGILNAMRSAIRSSDNGVGAGIVTSLLTMLITGGSAGIGMRQEPQLTANEPFDVYTKPFS
L*

Transcript Sequence

Transcript ID

Solyc03g094160.3.1
Transcript Infomation

metacaspase 1 (AHRD V3.3 *** AT1G02170.1),Pfam:PF00656
Sequence

CGCCACTGGCCATGTGTTCCTATTTTGTCTTCCGTTAAAGTGAAGGGCATATTTATTACG
GAAGATATCTACGTATCTTTTAGGATATTTATTTTTTTAATACAAACAACAAACGAGGTT
AAAGTTAAGTTACTTCAAATAATCAAATTATCAGCTAATTATGGTAGCCATCAGAGTAGA
GAGTAGCAGTCTGAAAGAAAGTCAACACGGAGCCTTCGTCTCCTCATCCGTTCTCCTTCT
TACCAACTCCCACTTCTTTTTTTCATTTCATTTCTTTTTTCTCTATAAATAAATAAATAC
ACTCTTTTAATTTAATCCACCAATTCCATTATTAATTCATAAAAGCATCACCATTTTCAA
TTTATCAAATTAATTGAAACAAGAAGAAGAAAGAAAAAACATGATGATGCTTGTCAATTG
TTCCAAGTGTCACACCCCCTTACAACTCCCACCAGGTGCAAAGTCCATTCGCTGCGCCAT
CTGCAGAGCCATCACACTAATTGCTGATCCTCACGCTGCTCCGCCAACACCCCCTTCCGC
TTACAATAACCACTACTATCCCCCTTCTTCTCCTTCTCCTGCTCTTGCTCCATCTACTTA
TAGTTCCGGTCAAAATTCATCGTCACGAAAGAGGGCGGTCATCGTAGGTATTTCGTATAC
GAATACGAGGAATGAACTGAAGGGATGTATTAATGATGCTAAATGTATGAAATTTTTGCT
CACCAATCGATTCAACTTTCCTCAAGACTCTATTCTCATGCTTACTGAAGAAGAGAGGGA
TCCATACAGAATACCGACAAAACATAACATAAGAATGGCGATGTACTGGCTTATGCAAGG
TTGTCAAGCAGGGGATTCTCTGGTGTTCCATTATTCTGGTCATGGTTCACAACAAAGAAA
TTACACCGGAGATGAAGTTGATGGGTTCGATGAAACACTTTGTCCGTTGGATTTTGAAAC
CCAAGGAATGATTGTTGATGATGAAATTAATGCAACACTTGTTAGGCCTCTTCCGCGTGG
AGCTAAGCTTCATGCTATTATAGATGCTTGTCACAGTGGTACTATGCTTGACCTACCGTT
TCTTTGTAGGATGGACAGGACTGGACGATATGTATGGGAAGATCATCGTCCTCGATCAGG
AGCATGGAAAGGAACAAGTGGGGGAGAGGTCATATCCTTCAGCGGTTGTGATGATGATCA
AATCTCTGCTGATACGGATAATTTGTCCAAGGTCACTTCAACTGGTGCAATGACGTTTTC
CTTCATCCAAGCAATCGAGCAAGGAAAAGGAACTACATATGGAGGTATTCTAAATGCAAT
GAGATCTGCCATTCGCAGTTCTGATAATGGTGTAGGAGCTGGCATTGTGACATCGCTATT
GACTATGCTGATCACTGGAGGAAGTGCTGGCATTGGAATGAGACAGGAGCCACAATTGAC
AGCAAATGAACCATTTGATGTGTACACCAAGCCATTTTCATTGTAGCATCTTACTCATCA
AGCAACACTACCAACCTAAGGTTTTTCATATTTTCATTTAGCTTTTGGGTGTTGAATTCC
TGTACAGTTACCAAGAAGGCAGTTGTAGAGTACTAAGATTCTTATATTCATCAATTTCAT
AAAATATTAATCATTCATGTACGACTATGATTGTTGTAACAAGCCAAAATTTTCGTCAAA
GGTGTTCATACTTTAGAATAAGTAACATAATAAAACCTTGCTGGTCAACAAAACACCTTA
GTCTAGGCTCAAACCCACACCCCTCGAGGCAACTTTGAACAGTATTAAGCATTGAGCTAT
CTTCCTTTATTAGTATTCAAGATTGTTCAACAATTATTATATATAAAAAGTAACGAACGC
TAAAAACACAATATTTGAAACACATTTGACCTTTGATCGAACTTATATGGCACTAATATT
GCTGAGGTGGGGAAAAATAATTGACTGCACGAGCCGCAAGTGAATATATATTTTTTATAT
TAAAAATAATTTAAATTTAAAAAAAATAAAAATAAACCCATCAGCCCCAATCCCACCCCA
CTCCCTCACCTGCAACTCTCTTCTTCCTTCAGTCCCTACCCTCACCCTCTCATTCTTCCT
TCTTCTTAACATTTGCCCCCACCCCCTCATCCCACCTAACCAAATCTCTTATCTCAATCA
TTTTAATTTCTTTAAGTATTCTCTATGAATCTTGATCGATTTACACCCTAATAAAATCTG
AATTTTCAAATTTTGTTTGTGAAAGATTGAAGTTTAGATAATTTTAGA