Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g083360.3.1
CDS Infomation

Pectinesterase (AHRD V3.3 *** K4BIB2_SOLLC)
Sequence

ATGGGCTATGGCCGTTTAGGAAAACCGGACCCCGGAGAAACCTCCGGCAGGGTGATAATT
CCCAATCCCCGGAGTAGTAAGATTAAAATCATGTTGATTTCAGCCACTGTACTTTTAATT
GCTTCGGCGATTTCTGTTGCGGTTTTGATCGGAGTTCGGCATAAGGCCGGAAATAGAATT
GATAAACCAAGTCAAGCAATGGCGCGTACCTGTAGTCGTACTCTGTATCCATCTCTCTGT
CTCAATTCGCTGATTAATTATCCTGGAGCTAACTCTGCTTCTGACAGTGACCTCGTTCAC
ATTTCCGTCAATTTAACTCTGCAGCGATTTGGTAAAGGACTTTACAAAGCTTCCGATATC
AACAACCTACAAATGAATACGCAAGTTAGATCGGCGTACGACGATTGCCTTGAACTGTTG
GAAGAATCAGTTGATCTTCTCTCACACTCGTTAGACTCTGTTTTCTCCGGAGATGGAGAT
TCGCCGACGGGATCTACACAGGACGTCATGACGTGGCTAAGCGCAGCTCTGACGAATCAG
GACACGTGTACCGACGGATTCGCCGACGTCACCGGGAATGTGAAGGATCATATGTCGGAG
AACCTAAAGGACTTATCTGAATTGGTGAGTAATGCTCTCGCTATTTACACCGCCGCGAAT
GGCGACGATGACTTCTCCGGGATTCCGATACAGAATCGCCGGCGTAGATTGATGGAATTC
GAAACATATCATGATGAATTTCCGAAATGGATGTCACGGAGGGATAGAAAATTGATGAAT
AAATCAGTGTCGACAATTCAAGCAGATATAATAGTGGCGAAGGACGGTAGCGGGACAGTG
AAGACAATAGCTGAAGCGATAAAAAAGGTGCCGGAAAAGAGTAATCACCGGACCATAATT
TACGTGAAGGCGGGAAGGTATGAAGAAAATAATTTGAAAGTAGGGAGGAAAAAAATGAAC
GTGATGTTCATAGGAGATGGAAAGGGGAAGACGGTAATTACGGGAGGAAAAAGTGTATCT
CAACACCTAACAACATTCCATACTGCCTCCTTTGCTGCAACTGGAGCTGGTTTTATAGCA
AGGGATATGACATTTGAGAACTATGCTGGACCAAACAATCATCAAGCAGTAGCCCTCCGT
ATCGGAGGTGATCACGCCGTGGTCTTCCGCTGCAATGTTATTGGATACCAAGACACCCTC
TACGTGCATTCACAGCGTCAATTCTATCGCGAGTGTGATATCTATGGTACAGTAGATTTC
ATTTTTGGAAATGCAGCAGTGGTCCTCCAAAACTGTAACATCTATGCTCGAAAGCCGATG
GCTAATCAAAAGAACACCATCACAGCCCAAAACAGGAAGGACCCTAACCAAAACACTGGC
ATTTCAATCCATGCTTGCAAAATCATGGCAACACCTGATCTTCAGGCGTCTAAAGGAAGC
TTCTCTACATATCTAGGTCGACCATGGAAGATGTATTCGCGAACAGTATACATGTTATCT
AACATGGGTGATCATATACACCCACATGGTTGGCTTGAGTGGAATGGTGATTTTGCGCTG
AACACATTGTATTATGGTGAATACATGAACTTTGGGCCAGGAGCAGCAGTAGGGCAACGC
GTCACTTGGCCAGGGTATCGGGTGATTAAGTCTGTCGAAGAGGCCAGCAAGTTCACTGTA
TCAAAGTTTATTTATGGATCATCTTGGTTGCCTTCAACTGGGGTGTCTTTCTTGGCAGGG
CTAAGTACTTAA

Peptide Sequence

PEP ID

Solyc03g083360.3.1
PEP Infomation

Pectinesterase (AHRD V3.3 *** K4BIB2_SOLLC)
Sequence

MGYGRLGKPDPGETSGRVIIPNPRSSKIKIMLISATVLLIASAISVAVLIGVRHKAGNRI
DKPSQAMARTCSRTLYPSLCLNSLINYPGANSASDSDLVHISVNLTLQRFGKGLYKASDI
NNLQMNTQVRSAYDDCLELLEESVDLLSHSLDSVFSGDGDSPTGSTQDVMTWLSAALTNQ
DTCTDGFADVTGNVKDHMSENLKDLSELVSNALAIYTAANGDDDFSGIPIQNRRRRLMEF
ETYHDEFPKWMSRRDRKLMNKSVSTIQADIIVAKDGSGTVKTIAEAIKKVPEKSNHRTII
YVKAGRYEENNLKVGRKKMNVMFIGDGKGKTVITGGKSVSQHLTTFHTASFAATGAGFIA
RDMTFENYAGPNNHQAVALRIGGDHAVVFRCNVIGYQDTLYVHSQRQFYRECDIYGTVDF
IFGNAAVVLQNCNIYARKPMANQKNTITAQNRKDPNQNTGISIHACKIMATPDLQASKGS
FSTYLGRPWKMYSRTVYMLSNMGDHIHPHGWLEWNGDFALNTLYYGEYMNFGPGAAVGQR
VTWPGYRVIKSVEEASKFTVSKFIYGSSWLPSTGVSFLAGLST*

Transcript Sequence

Transcript ID

Solyc03g083360.3.1
Transcript Infomation

Pectinesterase (AHRD V3.3 *** K4BIB2_SOLLC)
Sequence

CCAAACAAGCCCTAAATCAACCTAATCTTACATGCTGAAGATTTATAATACACATAAATT
ATATTAGCCAAAAATTTAAAAATTACTATATTTATTTATCAAAGCGGTTTAGATAAATAT
CTCACGACCTTTAAGATCGGTCTTTATAAGTCCAATAAAGACAAAGTAAAAAAAGAAAAG
AGCGAGTAGTATTAAAATATGGGGATTAGTTAATTTCTAATGAAGTAACTGAACTCCACT
AGAAATATTCTTCGTAAGAAAAAGCAATAAAGTATACTACAATTCGGTATTCGTCACCCT
TAGCACTAAGGTAATCTACGAATGGACAAAGAAAATAGCTTGCTTACGATTTTCTGTCTT
CAAACTTATAAAAAATTAAATTTTTTTCGATATTAATTAAGAATAAAGAAATCACAATCA
CATGCGAACTTGTTAGAGGCGAAAATTTACTCTTTTCACTAATTAATCACTATATATATA
TATAGTCGAAGCCAGCTAATTCTCTTCTCCTTTAAGACATCGACTTCGCACCAACCACTA
AAATTCTATTTTCTTAATTAGCAATACTCACCGCCCAATATATACTCACATAATTTCTCC
ATTCTTCATCACACTCTTTCACTCACTAACTTCCATTTTTGTTCACATTTTCTGTATTCA
TAAAAATGGGCTATGGCCGTTTAGGAAAACCGGACCCCGGAGAAACCTCCGGCAGGGTGA
TAATTCCCAATCCCCGGAGTAGTAAGATTAAAATCATGTTGATTTCAGCCACTGTACTTT
TAATTGCTTCGGCGATTTCTGTTGCGGTTTTGATCGGAGTTCGGCATAAGGCCGGAAATA
GAATTGATAAACCAAGTCAAGCAATGGCGCGTACCTGTAGTCGTACTCTGTATCCATCTC
TCTGTCTCAATTCGCTGATTAATTATCCTGGAGCTAACTCTGCTTCTGACAGTGACCTCG
TTCACATTTCCGTCAATTTAACTCTGCAGCGATTTGGTAAAGGACTTTACAAAGCTTCCG
ATATCAACAACCTACAAATGAATACGCAAGTTAGATCGGCGTACGACGATTGCCTTGAAC
TGTTGGAAGAATCAGTTGATCTTCTCTCACACTCGTTAGACTCTGTTTTCTCCGGAGATG
GAGATTCGCCGACGGGATCTACACAGGACGTCATGACGTGGCTAAGCGCAGCTCTGACGA
ATCAGGACACGTGTACCGACGGATTCGCCGACGTCACCGGGAATGTGAAGGATCATATGT
CGGAGAACCTAAAGGACTTATCTGAATTGGTGAGTAATGCTCTCGCTATTTACACCGCCG
CGAATGGCGACGATGACTTCTCCGGGATTCCGATACAGAATCGCCGGCGTAGATTGATGG
AATTCGAAACATATCATGATGAATTTCCGAAATGGATGTCACGGAGGGATAGAAAATTGA
TGAATAAATCAGTGTCGACAATTCAAGCAGATATAATAGTGGCGAAGGACGGTAGCGGGA
CAGTGAAGACAATAGCTGAAGCGATAAAAAAGGTGCCGGAAAAGAGTAATCACCGGACCA
TAATTTACGTGAAGGCGGGAAGGTATGAAGAAAATAATTTGAAAGTAGGGAGGAAAAAAA
TGAACGTGATGTTCATAGGAGATGGAAAGGGGAAGACGGTAATTACGGGAGGAAAAAGTG
TATCTCAACACCTAACAACATTCCATACTGCCTCCTTTGCTGCAACTGGAGCTGGTTTTA
TAGCAAGGGATATGACATTTGAGAACTATGCTGGACCAAACAATCATCAAGCAGTAGCCC
TCCGTATCGGAGGTGATCACGCCGTGGTCTTCCGCTGCAATGTTATTGGATACCAAGACA
CCCTCTACGTGCATTCACAGCGTCAATTCTATCGCGAGTGTGATATCTATGGTACAGTAG
ATTTCATTTTTGGAAATGCAGCAGTGGTCCTCCAAAACTGTAACATCTATGCTCGAAAGC
CGATGGCTAATCAAAAGAACACCATCACAGCCCAAAACAGGAAGGACCCTAACCAAAACA
CTGGCATTTCAATCCATGCTTGCAAAATCATGGCAACACCTGATCTTCAGGCGTCTAAAG
GAAGCTTCTCTACATATCTAGGTCGACCATGGAAGATGTATTCGCGAACAGTATACATGT
TATCTAACATGGGTGATCATATACACCCACATGGTTGGCTTGAGTGGAATGGTGATTTTG
CGCTGAACACATTGTATTATGGTGAATACATGAACTTTGGGCCAGGAGCAGCAGTAGGGC
AACGCGTCACTTGGCCAGGGTATCGGGTGATTAAGTCTGTCGAAGAGGCCAGCAAGTTCA
CTGTATCAAAGTTTATTTATGGATCATCTTGGTTGCCTTCAACTGGGGTGTCTTTCTTGG
CAGGGCTAAGTACTTAAAAGAAAGGTATAAATATCAGATTTATGTCTTTTTGCAGTCGGT
ATATATAAATAATAAGTATGTACCATTGTTATTTAATTCTTAAGTGTAATAATTTATAAG
CTGTAAGTTGCAATTTTGCTTTATTGGTGAACTGACTAAAGAGCAAGTTTGCAACATTCT
AGAGATACCTCTTCATTAAATGATAAATGTTGTAATTTCTTTTTTTGTTGTAATTAGAAC
ATACTAGCAAAAAGTTATTGGTTTAATTGAAAAGTGCCAGTTTCACATTACATTCAATTG
ACTTTTGTGGATGTGTATCTCCTTTAATAACC