Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g083250.3.1
CDS Infomation

ATP-dependent clp protease ATP-binding subunit clpx, putative (AHRD V3.3 *** B9RSF1_RICCO)
Sequence

ATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCAC
TTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGT
AGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAA
CCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGT
AGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGG
CAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAATTTGTTCAGGTGGGTGAA
GGGGAAGTTCCTGGTTCGGGTTCGGGTTCTGGAGGTGGGTTTGGTTCCGGGTCAAAAGAT
GGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCAACTGTGTAGA
GGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAGGTTCTATCTGTCGCCGTA
TATAATCATTACAAGAGAATATATAATGACTCTTCACATAAGTGGCCTGCAGGAAATGAC
AGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATC
CTTTTAATGGGACCAACAGGTTCAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTG
GTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAGGCAGGATATGTTGGG
GAAGATGTGGAATCTATTCTATATAAGCTCCTCACTGTTGCTGACTACAATGTAGCAGCT
GCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAGGCTGAAAGC
CTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTT
GAAGGAACAATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAAT
ATTCAGATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAG
AAAACAATCTCAGAAAGGCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACA
AACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACAGTT
GAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATT
CTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAGGTTCTAACGGAGCCAAAA
AATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGGGTAAAGTTGCATTTT
GTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGT
GGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAGATTCCTGATGTC
AGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAG
GGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCA
CAGAATAGATCAAAGGATTCTGAGGCAAACATGGAGGCGTCCGATGGAGACCATGAGGCA
GAACAGGAACTTCCTTCCATTGTTGCTTTGTAA

Peptide Sequence

PEP ID

Solyc03g083250.3.1
PEP Infomation

ATP-dependent clp protease ATP-binding subunit clpx, putative (AHRD V3.3 *** B9RSF1_RICCO)
Sequence

MAAVLRSKSSRRTASMAITHFRYFIINDFHTGHLPNFHLCSRTKWDNLVSNSGHSSSLFK
PVSFRGEFVDRCYDNLKNSSRKSKEKINMSSNYGEPPEIWQPPGEGIVVRPGVKFVQVGE
GEVPGSGSGSGGGFGSGSKDGSWGGSNLGTQFPTPKQLCRGLDKFVIGQERAKKVLSVAV
YNHYKRIYNDSSHKWPAGNDSSEKTDGVENESVELEKSNILLMGPTGSGKTLLAKTLARL
VNVPFVIADATTLTQAGYVGEDVESILYKLLTVADYNVAAAQQGIVYIDEVDKITKKAES
LNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLE
KTISERRQDSSIGFGAPVRTNMRTGGVTSAAVTSSLLETVESSDLISYGLIPEFVGRFPI
LVSLSALTEDQLVQVLTEPKNALGKQYKKMFQMNGVKLHFVEAALRLVARKAISKNTGAR
GLRSILENILMDAMYEIPDVRTGDDVIDAVVVDEESVGTEGRGCGGKILYGKGAFDRHFP
QNRSKDSEANMEASDGDHEAEQELPSIVAL*

Transcript Sequence

Transcript ID

Solyc03g083250.3.1
Transcript Infomation

ATP-dependent clp protease ATP-binding subunit clpx, putative (AHRD V3.3 *** B9RSF1_RICCO)
Sequence

ATGGCAGCTGTACTTAGATCGAAATCGTCTAGACGTACGGCTTCTATGGCTATTACCCAC
TTCAGATACTTTATCATCAATGATTTTCACACGGGTCATTTACCCAATTTCCATTTGTGT
AGTCGAACCAAATGGGATAATTTGGTCTCAAATTCTGGTCATAGTTCTTCTTTATTCAAA
CCTGTATCGTTTCGTGGTGAATTTGTTGACCGATGTTATGATAATTTGAAGAATTCAAGT
AGGAAGAGTAAGGAGAAAATTAATATGTCTAGTAACTATGGGGAACCTCCTGAGATTTGG
CAACCACCTGGTGAGGGGATTGTGGTTCGTCCTGGTGTGAAATTTGTTCAGGTGGGTGAA
GGGGAAGTTCCTGGTTCGGGTTCGGGTTCTGGAGGTGGGTTTGGTTCCGGGTCAAAAGAT
GGGTCTTGGGGTGGATCCAATTTGGGTACCCAATTTCCCACACCAAAGCAACTGTGTAGA
GGACTTGATAAGTTTGTAATTGGACAGGAGAGAGCTAAAAAGGTTCTATCTGTCGCCGTA
TATAATCATTACAAGAGAATATATAATGACTCTTCACATAAGTGGCCTGCAGGAAATGAC
AGTAGTGAAAAAACAGATGGAGTAGAAAATGAATCTGTGGAGCTTGAGAAGAGTAACATC
CTTTTAATGGGACCAACAGGTTCAGGGAAAACTTTACTTGCCAAGACCTTAGCTCGATTG
GTGAATGTTCCCTTTGTAATAGCAGATGCTACGACACTAACTCAGGCAGGATATGTTGGG
GAAGATGTGGAATCTATTCTATATAAGCTCCTCACTGTTGCTGACTACAATGTAGCAGCT
GCTCAGCAAGGCATAGTGTATATTGATGAAGTTGACAAAATCACGAAAAAGGCTGAAAGC
CTCAACATCAGTAGAGATGTCTCAGGAGAGGGCGTCCAGCAGGCATTGCTGAAGATGCTT
GAAGGAACAATTGTCAATGTGCCGGAGAAGGGAGCTCGGAAGCACCCTAGAGGGGATAAT
ATTCAGATTGATACCAAAGATATTCTCTTTATATGTGGTGGAGCCTTCATTGACTTGGAG
AAAACAATCTCAGAAAGGCGCCAAGATTCTTCTATAGGATTTGGTGCACCAGTTCGCACA
AACATGAGGACTGGTGGTGTTACAAGTGCTGCTGTGACGTCATCTTTATTGGAGACAGTT
GAAAGTAGTGATCTTATATCATACGGTCTGATACCTGAGTTTGTCGGCCGATTCCCCATT
CTTGTTAGTCTGTCAGCTTTAACTGAGGATCAACTTGTGCAGGTTCTAACGGAGCCAAAA
AATGCGCTAGGGAAGCAGTACAAAAAGATGTTCCAGATGAACGGGGTAAAGTTGCATTTT
GTTGAAGCTGCACTAAGATTGGTAGCTAGGAAAGCAATATCTAAAAATACTGGTGCTCGT
GGATTGCGATCCATATTGGAGAATATATTGATGGATGCTATGTATGAGATTCCTGATGTC
AGAACAGGCGATGATGTAATAGATGCCGTTGTAGTTGATGAGGAGTCTGTAGGAACTGAG
GGGCGAGGATGCGGGGGTAAAATCCTTTATGGCAAAGGTGCATTTGACCGACACTTCCCA
CAGAATAGATCAAAGGATTCTGAGGCAAACATGGAGGCGTCCGATGGAGACCATGAGGCA
GAACAGGAACTTCCTTCCATTGTTGCTTTGTAAATGTTCTGTGAGGTGTATTTCTGGTCT
CACTTGTGTACAGTAATCTAAAATTCAAATAAACAATGTTATTTAAATAGAGCTCAATGT
ACTTTCATACTGCATTTTGTTGTGTTTTTACTGTTATCTTGCTATTTATTCTTTGATCTG
CACTAGCTATATAATTCTGAAGTTAGAAAATGTCACCCTTCTCAACTTTTCTCTTGGTTA
TTATTTGAACAGAATATGCATCTTTATGATCTAGTCATCCTTTAGAAACACAATTTCTTC
CGATGACCGG