Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g082990.3.1
CDS Infomation

Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT5G53080.1)
Sequence

ATGTCAACTTCTCTGCTCCGTTCAACTCCTTCGCAACTCACCAACTCCGGCAGGATGAAT
CTTATAAGTTCAAATACCCATTTAGGCATATTGTCCGTCTCCTTTTATCACCGTCCCTCT
CAAAGTTGCAATATCAAGCTTTGTTTTTCCACCAGTGGGTTGTGTTCACGTCTTGGCACG
AGGTGCTGTGTTGTCTCGGCTACCTCATCCAAGTTGCACGAAAACAAAGGAATTGATTCA
AGTATTGATTCTCAAAGGTATACAGATTTAAAGGACGACATGGCTAGCAGCCTCAGTATT
CTTGAGGAGCAGCTGAGGGACTTATTTAATGAAGTCCATGCCATGATAAGAATAGGGAAG
GAAAATGAGGCCAGAGATCTGCTTCTAGCAAATTTTGAAGCTGTCAAAGAACAGATTGAT
GCAGGCCTCAAGGGTATAGAAGAAGCAGCTATTCTTGATGTAACAGCCTTGGGGTACATG
GCCCTTGGAGACATAAGGACTGTCAAACCCCTGTTGGATGTGTTGAGCGAGGTTGTTGAT
GACTTGAAAGATGAGGAGCCTCTTCTGGACTCGATACTCACTCATATGGGTAATATGTAT
GAAAAGTTGGAAAATTTTGAGATGTCCATTTGTGTGTATGAAAGAGCTGTCAAAGTTGTT
GAGAGACTATATGGAAATACCAGTTCTTTTGTCGTCACTCCATTGTTAGGGATGGCAAAA
GTTTTGGGTTCTACTGGAAAGACCAAAAAAGCAATAGAAACATATCAACGCGTAGTGAAA
ATTCTTGAATCTAGCAGGGGTGAAGAAAGTGAGGAACTGGTAGTGCCTTTATTTGGCATG
GGCAATCTTCTTCTGAAGGAAAGGAGAGTGACTGATGCAGAAAATGCTTTTAACAGAATT
TTGACCACGTACATGAAGTTATATGGAGAAAATGATGGCAGAGTTGGACTGTCCATGAGT
TATCTTGCACGTGTGAAATGTGCAAAAGGAGATGTGAATGAAGCCATTGATCTGTATAAA
GAGGCTCTTTGCAGGCTGAAGGTTTCTGATTATATAGCCATAGATGATCACATAATGGAG
AAGATGAGGGTAGACTTGGCTGAATTACTTCATGCAGTTGGAAGAGGTGAAGAAGGCCGT
ATGCTACTGGAGGAGTGCTTGTTGATAACTGAGAAGTTCAGGGGTGAAGGGCATCCCAGT
TCAGTCTCTCATCTTGTGAATCTAGCCACTTCTTATTCACAGTCCAAACTTTTTGCAGAA
GCTGAGCGCTTGCTAAGGATGAGTTTGCAGATTATGTATCAGAATGTTTCACCTGATGAT
CAATCCATTACTTTCCCAATGCTACATCTTGCAGTTACTCTCTACAATCTAAACCGTAAT
GAGGAGGCCGAAAAACACGCATTAGAGGTTCTGCGAATCCGGGAGAGGGCATTTGGAGAA
GATTCTCTACCAGTTGGGGAGGCTCTTGACTGTTTGGTCTCCATTCAGACCCAGCTGGGG
AAGGATGATGGTGAATTGCTGGAGTTGCTCAAGAGAGTACTGAAAATTCAAGAGAAAGCT
TTCGGTACTGACAGTGAGGAAGTCATGGAAACACTTAAAAAAGTTGTATATTACTTGGAG
AAGATGGGGAGGAAACATGAGGGACTCCCTCTGGAAAGAAGATTATCAAAGCTCCGAACG
AAATTTAAGCAAATGGTTCAATATTAA

Peptide Sequence

PEP ID

Solyc03g082990.3.1
PEP Infomation

Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT5G53080.1)
Sequence

MSTSLLRSTPSQLTNSGRMNLISSNTHLGILSVSFYHRPSQSCNIKLCFSTSGLCSRLGT
RCCVVSATSSKLHENKGIDSSIDSQRYTDLKDDMASSLSILEEQLRDLFNEVHAMIRIGK
ENEARDLLLANFEAVKEQIDAGLKGIEEAAILDVTALGYMALGDIRTVKPLLDVLSEVVD
DLKDEEPLLDSILTHMGNMYEKLENFEMSICVYERAVKVVERLYGNTSSFVVTPLLGMAK
VLGSTGKTKKAIETYQRVVKILESSRGEESEELVVPLFGMGNLLLKERRVTDAENAFNRI
LTTYMKLYGENDGRVGLSMSYLARVKCAKGDVNEAIDLYKEALCRLKVSDYIAIDDHIME
KMRVDLAELLHAVGRGEEGRMLLEECLLITEKFRGEGHPSSVSHLVNLATSYSQSKLFAE
AERLLRMSLQIMYQNVSPDDQSITFPMLHLAVTLYNLNRNEEAEKHALEVLRIRERAFGE
DSLPVGEALDCLVSIQTQLGKDDGELLELLKRVLKIQEKAFGTDSEEVMETLKKVVYYLE
KMGRKHEGLPLERRLSKLRTKFKQMVQY*

Transcript Sequence

Transcript ID

Solyc03g082990.3.1
Transcript Infomation

Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT5G53080.1)
Sequence

TAATTGTTATTATTGATTTAATTTTAAAAATTAGTAAAAAAACTTTTAATTTTAAAAATT
GATAAAGAATATTTTCGTAATCTAATTTTGAATTTAAAATATTCCCACCCCACCATAGTT
TCGAGTATTATTATCTAGATTTGTATGTTATACAAAATTAGTATTGTTCTTTTGTAGCAA
TAAGGGTGATTAATAATGCTAATTATGAAAATTTGCGTTTAATTAATTAGAAAACCCAGA
TAGAATCGCATATTTGTGGATAATCTCTCTGCCTCCCTCATTTTCTCCCGTGTCTCTGCT
GCTGCAAACTGCAAATGTCAACTTCTCTGCTCCGTTCAACTCCTTCGCAACTCACCAACT
CCGGCAGGATGAATCTTATAAGTTCAAATACCCATTTAGGCATATTGTCCGTCTCCTTTT
ATCACCGTCCCTCTCAAAGTTGCAATATCAAGCTTTGTTTTTCCACCAGTGGGTTGTGTT
CACGTCTTGGCACGAGGTGCTGTGTTGTCTCGGCTACCTCATCCAAGTTGCACGAAAACA
AAGGAATTGATTCAAGTATTGATTCTCAAAGGTATACAGATTTAAAGGACGACATGGCTA
GCAGCCTCAGTATTCTTGAGGAGCAGCTGAGGGACTTATTTAATGAAGTCCATGCCATGA
TAAGAATAGGGAAGGAAAATGAGGCCAGAGATCTGCTTCTAGCAAATTTTGAAGCTGTCA
AAGAACAGATTGATGCAGGCCTCAAGGGTATAGAAGAAGCAGCTATTCTTGATGTAACAG
CCTTGGGGTACATGGCCCTTGGAGACATAAGGACTGTCAAACCCCTGTTGGATGTGTTGA
GCGAGGTTGTTGATGACTTGAAAGATGAGGAGCCTCTTCTGGACTCGATACTCACTCATA
TGGGTAATATGTATGAAAAGTTGGAAAATTTTGAGATGTCCATTTGTGTGTATGAAAGAG
CTGTCAAAGTTGTTGAGAGACTATATGGAAATACCAGTTCTTTTGTCGTCACTCCATTGT
TAGGGATGGCAAAAGTTTTGGGTTCTACTGGAAAGACCAAAAAAGCAATAGAAACATATC
AACGCGTAGTGAAAATTCTTGAATCTAGCAGGGGTGAAGAAAGTGAGGAACTGGTAGTGC
CTTTATTTGGCATGGGCAATCTTCTTCTGAAGGAAAGGAGAGTGACTGATGCAGAAAATG
CTTTTAACAGAATTTTGACCACGTACATGAAGTTATATGGAGAAAATGATGGCAGAGTTG
GACTGTCCATGAGTTATCTTGCACGTGTGAAATGTGCAAAAGGAGATGTGAATGAAGCCA
TTGATCTGTATAAAGAGGCTCTTTGCAGGCTGAAGGTTTCTGATTATATAGCCATAGATG
ATCACATAATGGAGAAGATGAGGGTAGACTTGGCTGAATTACTTCATGCAGTTGGAAGAG
GTGAAGAAGGCCGTATGCTACTGGAGGAGTGCTTGTTGATAACTGAGAAGTTCAGGGGTG
AAGGGCATCCCAGTTCAGTCTCTCATCTTGTGAATCTAGCCACTTCTTATTCACAGTCCA
AACTTTTTGCAGAAGCTGAGCGCTTGCTAAGGATGAGTTTGCAGATTATGTATCAGAATG
TTTCACCTGATGATCAATCCATTACTTTCCCAATGCTACATCTTGCAGTTACTCTCTACA
ATCTAAACCGTAATGAGGAGGCCGAAAAACACGCATTAGAGGTTCTGCGAATCCGGGAGA
GGGCATTTGGAGAAGATTCTCTACCAGTTGGGGAGGCTCTTGACTGTTTGGTCTCCATTC
AGACCCAGCTGGGGAAGGATGATGGTGAATTGCTGGAGTTGCTCAAGAGAGTACTGAAAA
TTCAAGAGAAAGCTTTCGGTACTGACAGTGAGGAAGTCATGGAAACACTTAAAAAAGTTG
TATATTACTTGGAGAAGATGGGGAGGAAACATGAGGGACTCCCTCTGGAAAGAAGATTAT
CAAAGCTCCGAACGAAATTTAAGCAAATGGTTCAATATTAAAGATCCTACAAGGCCGCAT
GTTTGACATGGAGTTCGCATGCCACAAAAGGAAAAGAGACACTGGACTATAGCACAAGAC
CGGGTTTCTTCCTGCCATGGTGGACAAGGAAGACAGCCAAAACTAACAAATTTTCAGGCA
TATGAAAGAAATTCTTTTTAGCTATATCTATCCAAGAGTGTAGTGATATTTCAGAGAACA
TTCAGAACCAGATATGAAAAGCTTAGGGGACAGTTACCGTCAAATGAATACTACCAAAGG
TGTGGAATTGCATTGGACATGTCGAACCAAATGGGACGGTGTCCACATTCCAACTACTAT
CTGATTGACTACAATGTACAATGTAGTTGAACACTGGAAAGTGATAGCAAGCCTGATCAT
CTTTTGGCAATGAAAAATGTCACTGGTGATTCCTTTCGACTCTCTTTACATGAGATAGTG
ACATTGATGTACTTAGTTGAAATAACATCGGTCGTGTATACAGAATGTTCAGAGTACAGC
TGCAAGTCTGCAAGGTAACTTGTCAATCTGAAGGTTGAAGAAGCACATGCTCTTTTGGAC
TTGGAGTAGAAACTCAGATGGTGCTCTGTAGAAAGCCTGCAACATAACTGGCTAATCTGA
AGGTTGACGACGCATATGCTCTTTCTTGTCAATGTGAATGTTGTAAGAATAGAAAGAAGA
CATCATTGAACCTACATTTACTGATGATTTCTAAAGGTAAATACGTACATTTTGCAGTAC
CCAATGTCCAGATTCTTGAAGTTCATTGTAATTGAGCTATTCTTATTTTGGAACTGAATT
ATCAAGTTAAATTGATTGTAACAGAAATATAGTGAATCATATTCTTTTAAAAAAGACATT
TTGTTGATTTTATCATTATATTTGGAATACTATCTATCTCCTAAATTATATCAATTTT