Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g078100.3.1
CDS Infomation

Pectinesterase (AHRD V3.3 *** K4BHP0_SOLLC)
Sequence

ATGGCGTCCTTTTACTCTGTTACAGCACCACTGCTCTCCTTCCTTAATTTCCTCTTCTTA
TTCTCTACCTCCGCCGGTAACCACTACAGCCATTCACCTATTTCGAAGCCTAATTCCTTC
TCATCATCATCCATTCCGGTTGAGATTCAAGAAGCTTGCAAGGCCTCACGTGACCCTCCA
ACATGCCAGGCTGTATTGGTATTGGTCCAGCCAAAACAGTTAACTATTCCCCAAATCATC
CAATCAGCCTTGGAAGTCTCTTCCCAGAACCTCAACCAGGCTCAGTCCATGGTGAAGAAT
ATCCTCGATGTTTCCACAGGAAATATAAACCGTACAAACGCAGCAAAAGTCTGTATTGAG
GTGCTCTGCTATTCGGAACACAGATTGAATCTCACGGCTGAGGCCTTGCCACGTGGCGCG
ATCAAAGATGCTCGTGCCTGGATGAGCGCTGCTATGGTGTACCAGTACGACTGCTGGTCT
GCTTTGAAGTACGTAAACGGAACATTTCAGGTGAATGAAACGATGGCGTTTCTCAACTCT
TTGATCGGGTATAGCAGTAATGCATTAGGGATGATGGTGAATTACGACAATTTAGGGAAC
GAAACTGGGTCTTGGAGCCCGCCCAAGACGGAACGAGACGGGTTCTGGGAATTAGGTGCT
GGTGGTGGGTTTACTGTGAAGGAATTCAACGATGGTGTACCTAGAGGACTGAAACCAGAT
GTGACAGTGTGCAAGGCGGCCGCTGGTGGTTGTGATTATGAGACGGTGCAGCAGGCAGTG
AATTCGGCCCCCGAAAATGGAGTAGTTAAGCGGTTCGTGATATGGATCAAAGCTGGATTG
TATAATGAGATAGTTCGGGTGCCATTGGAGAAGAGGAATTTGGTGTTTTTGGGTGATGGT
ATGGGGAAAACCGTCATTACTGGATCCAGGAATGTTGGGCAGTTGGGCGTTTCCACTTAT
GATTCTGCAACCGTTGGAGTTGTTGGTGATGGATTCATGGCTAGTGGTATCACAATCCAG
AATACAGCAGGTCCAGATACTCACCAAGCTGTAGCATTCCGATCCGATAGTGATCTCTCC
ATCATTGAGAATTGTGAATTTCTTGGCAATCAGGATACCCTGTACGCCCATTCTATGCGC
CAATACTACAAGTCATGCCGCATCCAAGGCAATGTAGACTTCATTTTCGGGAACTCAGCT
ACCATCTTCCAAGACTGTGACATCCTTGTTGCACCTCGGCAACTAAATCCAGAGAAGGGT
GAGAACAATGCTGTGACAGCTCATGGAAGGATAGACCCAGCGCAATCAACTGGCTTTGTC
TTCCAAAACTGTTTAATAAATGGAACTGCAGACTACATGACCTTATACTACAGCAAGCCT
AAAGTACATAAAAATTTCCTCGGAAGGCCATGGAAGGAGTATTCCAGGACAGTCTTTATA
CATTGTACATTGGAAGCTCTTGTTAGTACTGATGGATGGATGCCTTGGAGTGACAATTTT
GCTCTGAGTACTCTTTACTATGGAGAATTCAAAAGTACTGGTCCTGGAGCTAATACAACA
GGACGGGTTCCATGGAGTAGCCAAATCCCAGCTGAACATGTTGGCTCATACTCTTTACAA
AATTTCATTCAGGGCGATCACTGGATTCCTCCATCTTGTTGA

Peptide Sequence

PEP ID

Solyc03g078100.3.1
PEP Infomation

Pectinesterase (AHRD V3.3 *** K4BHP0_SOLLC)
Sequence

MASFYSVTAPLLSFLNFLFLFSTSAGNHYSHSPISKPNSFSSSSIPVEIQEACKASRDPP
TCQAVLVLVQPKQLTIPQIIQSALEVSSQNLNQAQSMVKNILDVSTGNINRTNAAKVCIE
VLCYSEHRLNLTAEALPRGAIKDARAWMSAAMVYQYDCWSALKYVNGTFQVNETMAFLNS
LIGYSSNALGMMVNYDNLGNETGSWSPPKTERDGFWELGAGGGFTVKEFNDGVPRGLKPD
VTVCKAAAGGCDYETVQQAVNSAPENGVVKRFVIWIKAGLYNEIVRVPLEKRNLVFLGDG
MGKTVITGSRNVGQLGVSTYDSATVGVVGDGFMASGITIQNTAGPDTHQAVAFRSDSDLS
IIENCEFLGNQDTLYAHSMRQYYKSCRIQGNVDFIFGNSATIFQDCDILVAPRQLNPEKG
ENNAVTAHGRIDPAQSTGFVFQNCLINGTADYMTLYYSKPKVHKNFLGRPWKEYSRTVFI
HCTLEALVSTDGWMPWSDNFALSTLYYGEFKSTGPGANTTGRVPWSSQIPAEHVGSYSLQ
NFIQGDHWIPPSC*

Transcript Sequence

Transcript ID

Solyc03g078100.3.1
Transcript Infomation

Pectinesterase (AHRD V3.3 *** K4BHP0_SOLLC)
Sequence

CCAAAGACAAATAAAAATGAATGGAAAAAGTAATAAAAAATTTAAAGCTACAAACAATTC
CAGAAATCCCATCTATTAAACCCGTGAAGCCTTCCACACTCACTAAACACCATTATCATA
TTTGGAATTACACTCCGCCTTCTAAATCATAATTATTATTCAACAATTTGTAATCTCTTC
ATTTTCATGGCGTCCTTTTACTCTGTTACAGCACCACTGCTCTCCTTCCTTAATTTCCTC
TTCTTATTCTCTACCTCCGCCGGTAACCACTACAGCCATTCACCTATTTCGAAGCCTAAT
TCCTTCTCATCATCATCCATTCCGGTTGAGATTCAAGAAGCTTGCAAGGCCTCACGTGAC
CCTCCAACATGCCAGGCTGTATTGGTATTGGTCCAGCCAAAACAGTTAACTATTCCCCAA
ATCATCCAATCAGCCTTGGAAGTCTCTTCCCAGAACCTCAACCAGGCTCAGTCCATGGTG
AAGAATATCCTCGATGTTTCCACAGGAAATATAAACCGTACAAACGCAGCAAAAGTCTGT
ATTGAGGTGCTCTGCTATTCGGAACACAGATTGAATCTCACGGCTGAGGCCTTGCCACGT
GGCGCGATCAAAGATGCTCGTGCCTGGATGAGCGCTGCTATGGTGTACCAGTACGACTGC
TGGTCTGCTTTGAAGTACGTAAACGGAACATTTCAGGTGAATGAAACGATGGCGTTTCTC
AACTCTTTGATCGGGTATAGCAGTAATGCATTAGGGATGATGGTGAATTACGACAATTTA
GGGAACGAAACTGGGTCTTGGAGCCCGCCCAAGACGGAACGAGACGGGTTCTGGGAATTA
GGTGCTGGTGGTGGGTTTACTGTGAAGGAATTCAACGATGGTGTACCTAGAGGACTGAAA
CCAGATGTGACAGTGTGCAAGGCGGCCGCTGGTGGTTGTGATTATGAGACGGTGCAGCAG
GCAGTGAATTCGGCCCCCGAAAATGGAGTAGTTAAGCGGTTCGTGATATGGATCAAAGCT
GGATTGTATAATGAGATAGTTCGGGTGCCATTGGAGAAGAGGAATTTGGTGTTTTTGGGT
GATGGTATGGGGAAAACCGTCATTACTGGATCCAGGAATGTTGGGCAGTTGGGCGTTTCC
ACTTATGATTCTGCAACCGTTGGAGTTGTTGGTGATGGATTCATGGCTAGTGGTATCACA
ATCCAGAATACAGCAGGTCCAGATACTCACCAAGCTGTAGCATTCCGATCCGATAGTGAT
CTCTCCATCATTGAGAATTGTGAATTTCTTGGCAATCAGGATACCCTGTACGCCCATTCT
ATGCGCCAATACTACAAGTCATGCCGCATCCAAGGCAATGTAGACTTCATTTTCGGGAAC
TCAGCTACCATCTTCCAAGACTGTGACATCCTTGTTGCACCTCGGCAACTAAATCCAGAG
AAGGGTGAGAACAATGCTGTGACAGCTCATGGAAGGATAGACCCAGCGCAATCAACTGGC
TTTGTCTTCCAAAACTGTTTAATAAATGGAACTGCAGACTACATGACCTTATACTACAGC
AAGCCTAAAGTACATAAAAATTTCCTCGGAAGGCCATGGAAGGAGTATTCCAGGACAGTC
TTTATACATTGTACATTGGAAGCTCTTGTTAGTACTGATGGATGGATGCCTTGGAGTGAC
AATTTTGCTCTGAGTACTCTTTACTATGGAGAATTCAAAAGTACTGGTCCTGGAGCTAAT
ACAACAGGACGGGTTCCATGGAGTAGCCAAATCCCAGCTGAACATGTTGGCTCATACTCT
TTACAAAATTTCATTCAGGGCGATCACTGGATTCCTCCATCTTGTTGATAAATAGTACTA
TGTAATCTGATGTAGTTAGCTAAAAGTTCTATTCATGATCGTGCGTCTTATGGATTACAA
TTATATTAACCTATTGTATCATTGCGGGAAGACTTGTGAAATTTGTAAATATGAGATCTT
TCCTAAACCTTCAATTTCCTTCACAGTGTCAATCTTGTTTAGTAGTTATACAAGCTCTTG
TTATTGAAGCACTTCGTAAGAAGTTAATAAAAACAACCCTAGTTTGCAATTTATGGGCGA
ACTATCT