Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g071570.3.1
CDS Infomation

Pectate lyase (AHRD V3.3 *** K4BHI7_SOLLC)
Sequence

ATGTCTTCCCAGAGTTTGTTTTACAGGGCAAAGATGCCTCCTGCCACTCCCATTCTCTTA
TTTATCTACCTCATTCTCTCCTTCTTCTCACCTCTAATTGATTCCCAACTCAATCTTACC
CTTCCAAACCAACACCCTTATCCTGAATCTGTTGTTCACCAACTTCACAGGAGGGTTAAT
GAGTCCAGATTACTATTCCAGACAATTGTAAGAGATAGCAAATGTCACAGTACAGGAAAC
CCAATAGATGATTGCTGGCAATGCGACCCAAACTGGGCCAAAGACCGGCAAAGGCTAGCA
GACTGCTCCATTGGTTTCGGTCAGAGTGCAATGGGTGGGAAAGGAGGTCAGATCTACGTA
GTTAGAGACTCCTCCGACAGAGACACAGTCAACCCAATTCCGGGCACGCTCCGTCACGCC
GTAGTTCAAGAGGAGCCTCTTTGGATCGTGTTTGCAGCAGACATGGTTATAAAGCTAAAG
CACGAGCTTATTATCAACAACTACAAGACCATCGACGGACGGGGAGCAAATGTTCACATC
ACCGGCAATGGGTGTATTACATTACAGTATGTGAGCCATGTGATTATACATAACGTTCAT
ATTTACAATTGTGTCCCTTCGGGTAATACTAACATACGGTCGAGCCCAACGCATGTTGGG
TGGAGAGGCAAATCGGACGGTGATGGTATATCCATCTTTGGATCTCATAATATCTGGATT
GATCACTGTGCATTATCTCATTGTACCGACGGTTTGATTGATGCAATCATGGGGTCTACT
GCTATTACTATATCGAATAACTATTTTAGTCATCATGATGATGTTATGCTCTTGGGACAT
GATGATAAATACTTGCCTGATTCAGGAATGCAGGTGACAATTGCATTCAATCATTTCGGA
GAAGGATTAGTGCAAAGAATGCCAAGAATTAGAAGAGGATATGTACATGTGGTGAACAAC
GATTTCACACACTGGCAAATGTATGCAATTGGTGGAAGTGCTAATCCTACCATTAACAGT
CAAGGAAATCGATATACTGCTCCCGATGATCCAAATTTGAAGGAGGTGACGAAGCGGGAG
GACACAGACAATGGGCAGTGGGATGAATGGAATTGGAGGACGGACGGGGACACTATGGTT
AATGGCGCATTTTTTGTGCCTTCAGGGCAAGGCCTTAGCAACCAATATACCAAAGCCTAC
AGCGTTGATCCCAAATCCGCCCTTCTAATCAACCAGCTCACCGCCAATGCTGGTGTCCTT
GGTGGCCCCAGGGACAATAGCATAAGCATCTTACCCCAAGTGGGCGGCGGCACTAGTGAA
GGAAGCGGCAGGGGTCATGACCAGTCCAATAGCGGCAGTGTCGACTTGTTCGGAATGATA
TTCAGCGGTACTGGTGCATCTGCAGCAGCACCACCAACAACCACCCCTATCTTATTCTCC
TTTTTCATTCTTCTCACTTTGTACATCATAACTATCACCACTCAATTATCAAAACCATTC
TTACACTTGCTATAG

Peptide Sequence

PEP ID

Solyc03g071570.3.1
PEP Infomation

Pectate lyase (AHRD V3.3 *** K4BHI7_SOLLC)
Sequence

MSSQSLFYRAKMPPATPILLFIYLILSFFSPLIDSQLNLTLPNQHPYPESVVHQLHRRVN
ESRLLFQTIVRDSKCHSTGNPIDDCWQCDPNWAKDRQRLADCSIGFGQSAMGGKGGQIYV
VRDSSDRDTVNPIPGTLRHAVVQEEPLWIVFAADMVIKLKHELIINNYKTIDGRGANVHI
TGNGCITLQYVSHVIIHNVHIYNCVPSGNTNIRSSPTHVGWRGKSDGDGISIFGSHNIWI
DHCALSHCTDGLIDAIMGSTAITISNNYFSHHDDVMLLGHDDKYLPDSGMQVTIAFNHFG
EGLVQRMPRIRRGYVHVVNNDFTHWQMYAIGGSANPTINSQGNRYTAPDDPNLKEVTKRE
DTDNGQWDEWNWRTDGDTMVNGAFFVPSGQGLSNQYTKAYSVDPKSALLINQLTANAGVL
GGPRDNSISILPQVGGGTSEGSGRGHDQSNSGSVDLFGMIFSGTGASAAAPPTTTPILFS
FFILLTLYIITITTQLSKPFLHLL*

Transcript Sequence

Transcript ID

Solyc03g071570.3.1
Transcript Infomation

Pectate lyase (AHRD V3.3 *** K4BHI7_SOLLC)
Sequence

AATAGAGGGAGTATAATGTTTCCGAACGAAATAACACAAAAATGCAATAAAGTTTATGAT
ATTATAGTAAAATATAGTGCCATCAATGATGAAGAAAATTAAATGAAATGCCGTGTGTTT
GGTTTGAAGACCCCCTAAATAGAGATTAGAGAGTGAGGGAGCCTAGGTAGGAGAAGAGAA
ATAAAAGTGCTCTCTCCCGTCCTCCATCCTTCAATATAGTGTGAACATCATAGTCATCAC
CCCCAATGTAGAGTATGTCCAAAACCCTAATTACTGACAATACTCCATTATTATAGCAGC
AAGCATTTCAAAGAAGAAAATATGTCTTCCCAGAGTTTGTTTTACAGGGCAAAGATGCCT
CCTGCCACTCCCATTCTCTTATTTATCTACCTCATTCTCTCCTTCTTCTCACCTCTAATT
GATTCCCAACTCAATCTTACCCTTCCAAACCAACACCCTTATCCTGAATCTGTTGTTCAC
CAACTTCACAGGAGGGTTAATGAGTCCAGATTACTATTCCAGACAATTGTAAGAGATAGC
AAATGTCACAGTACAGGAAACCCAATAGATGATTGCTGGCAATGCGACCCAAACTGGGCC
AAAGACCGGCAAAGGCTAGCAGACTGCTCCATTGGTTTCGGTCAGAGTGCAATGGGTGGG
AAAGGAGGTCAGATCTACGTAGTTAGAGACTCCTCCGACAGAGACACAGTCAACCCAATT
CCGGGCACGCTCCGTCACGCCGTAGTTCAAGAGGAGCCTCTTTGGATCGTGTTTGCAGCA
GACATGGTTATAAAGCTAAAGCACGAGCTTATTATCAACAACTACAAGACCATCGACGGA
CGGGGAGCAAATGTTCACATCACCGGCAATGGGTGTATTACATTACAGTATGTGAGCCAT
GTGATTATACATAACGTTCATATTTACAATTGTGTCCCTTCGGGTAATACTAACATACGG
TCGAGCCCAACGCATGTTGGGTGGAGAGGCAAATCGGACGGTGATGGTATATCCATCTTT
GGATCTCATAATATCTGGATTGATCACTGTGCATTATCTCATTGTACCGACGGTTTGATT
GATGCAATCATGGGGTCTACTGCTATTACTATATCGAATAACTATTTTAGTCATCATGAT
GATGTTATGCTCTTGGGACATGATGATAAATACTTGCCTGATTCAGGAATGCAGGTGACA
ATTGCATTCAATCATTTCGGAGAAGGATTAGTGCAAAGAATGCCAAGAATTAGAAGAGGA
TATGTACATGTGGTGAACAACGATTTCACACACTGGCAAATGTATGCAATTGGTGGAAGT
GCTAATCCTACCATTAACAGTCAAGGAAATCGATATACTGCTCCCGATGATCCAAATTTG
AAGGAGGTGACGAAGCGGGAGGACACAGACAATGGGCAGTGGGATGAATGGAATTGGAGG
ACGGACGGGGACACTATGGTTAATGGCGCATTTTTTGTGCCTTCAGGGCAAGGCCTTAGC
AACCAATATACCAAAGCCTACAGCGTTGATCCCAAATCCGCCCTTCTAATCAACCAGCTC
ACCGCCAATGCTGGTGTCCTTGGTGGCCCCAGGGACAATAGCATAAGCATCTTACCCCAA
GTGGGCGGCGGCACTAGTGAAGGAAGCGGCAGGGGTCATGACCAGTCCAATAGCGGCAGT
GTCGACTTGTTCGGAATGATATTCAGCGGTACTGGTGCATCTGCAGCAGCACCACCAACA
ACCACCCCTATCTTATTCTCCTTTTTCATTCTTCTCACTTTGTACATCATAACTATCACC
ACTCAATTATCAAAACCATTCTTACACTTGCTATAGCATTTTAGGGTCACCACCACATTA
TTATTATTATTATTATTATTCAACATTTTGTACATTAGTTGATTGGTTGGAATATCAGAG
ATTAGTTGTTGCCTTCATGCATTGCATGCGCTCCTCCAGCTGTTTATTATAAGTGCAAAT
ACCATAATGCATTCCAATAGAGGAAGCTCCCTCTTTTATAAAGCATACAATATTCACTGA
AAAAACATAGCTCTGCTCATTTACTCTACTTGTCACTCATGCACTACTAACTGCTTCCAC
ACATTTATCCTAGTGTGTGCTCCGTACCCACCATACTACCACAGAGATCAACTAAAGTTC
AACATGTATGTGCTTATTCATCTCAGTAACGGTCAAAGGAAGGTGGACGTCCTCCCCTTC
CAGGGCGATCATAAGGTCCTGCTCTATCTCTGTAGCTTCTTCCCTCATATCGTGCTGGTC
CTCCACCTTCATATCTTCCACCCACATCTCTGTCAAACCCTTTTTCTTTGCCATAGCCAC
TCTGAGGGTAGCGGTCAGAACTCCCATACCTATTGCCCAAGCGATCGCCTCCAGGAGGGT
ACCTAGGATAAGAATACAAGTTATTTTTGGTGAGAAAACAAGCCACCACTTCACACTTTT
AACACTCTCAAACAATTACTCGATTATTTATAATCTGAAAGCTAAGCAGGCTCGCTAACA
AACTTCCGCTCAAAATTGTGATACCACTGCATTTTATTCAGTTCTTACAACAATATACCT
GTCGCTAGCGTATCGATCACGACTCTCATATCTGCTGTCATAGCGCTCCCTATCAGCATG
GTTCCCTCTATCATATCGGTCATCCATGTACCTATCACGGTCACTTCCAAACCTATCCCC
ACGTGTGCCACCATACCTAGAACGAGAAGGGGGTGTTAGTGGTCGAGCACCCCGGCCACC
TCCTTCCAATGGACAGTCTCTAGCCCAATGGCCAGGGCGACCACAGCTGAAGCAAGTGTC
TTGCCCAACTGACCTATTACCCCCACCATAGCTCGCCCTGCCACCTGATATGTAACCTCC
ACCATAGCCATGATCAGGATCCTCACTTCCCATCTTTGGTTGCGCCTTGTTCACCGATAT
CACCCTATCACCAACCTCTGCACCATCCATTTCTCTTATTGCATCCTCCATTGCTCGGCG
GTCTGCAAATGTTAAAAACCCAAATCCACGAGGGCGGCCCGTGTCTCTGTCCAGCATAAC
CTACAGGGGAAAAAAATCAGAAACTACTGCCAGAAAACATACATCAAACAGAAGAGCTGA
GTTCTTTGAACCCCATGCAATATACAAGTGTGAATTAATCAAACTGATGATGAGCATTAT
ATTGCCCGGACATTATGATTTACTCTTTTCACTACACATCTAGAGCATCAAATGGAAAAA
CTACATATCTGAAAGACTAGAAATGTTTTGAGCTCCTTTATTTTAATACTAGTTCAAATT
GTTCAGCCTGTTTGGGACTGAGGCATAGCTAACACATCGTGGCTGAATACATGTATAATG
GGAAGTGTCTCAATCAGCATAACAAGACAGCTTCCATTCAGAATGATACTGCAGAAAATA
TTGCTCAACCCAGCCAATTTTTAACACGGGAACTCAAATTCTGAGGGAAAAAAACTGCTC
AACATAACCAATTTAAACACAGGAACTCAATCTTTATCACAGTGAACCATCACAAAAATT
CAGAAAAGAAGAGGCAGTATCGTTAACCTTTTTACTCCTTCCCACATTCCCAAAATAATA
ACCTATCTCCTACACAAATATACCAAGACATGATTGGACCAAGATAGAATTAAAGAAATC
AAAGCTATTTGAAGACTGTTACTCTTGAGTTAATAAATAGGCACGAAACGTTAAGAATGA
CACAACCTTCAAGAATTTAGAATAGTTCATGTTGGGGCCCCTCATAATAGTGTCAATTTT
TTTTTTTTGATAACTTAGGTGTCCGGGCCAGCTTGCGCGTAGCTCAACTAATTCCATCAA
CAATAGGGTATCAAAATATTAGTCTTCAGACAAAAAAGAAAAAGGTTTTTTGACACCCAT
GCATCAATCTTCATATAGTGATCTGAAGACAGACAAATTTCACAGTTTTTTGTTTACAAG
AAAGGGAATAATTGACTTTCTTAGGTAAGTTTTTCAAATTTCTCCCATTGCTACAAAATC
CTCAATCATTCATAACTTAAGTTTTTTTTCTTATGACTGAGAAAAGCCATAAGTTAAGAA
ATCCTTATGGC