Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g059030.3.1
CDS Infomation

CDK5RAP3-like protein (AHRD V3.3 *** A0A061EXQ0_THECC)
Sequence

ATGCAGAAGGAAGAAGATATTCGCAATCTTCCAATCGACATAGCATTCACTCGACTCGGA
GAGTGGCTGGTTGATCGGAAAAGAATTCCGGCCGATTGGCGGAAACGACTTGCCGCCGTT
AGAGCTAAGATTACGACGTCGTTTGCCTCGCTGCCTAGAGACATTGATCCTTACTTCCAC
ACTCTTGATATTGAAGGGATCGGTTATTTGGAAGCCAAAAAAATATATGAGATTCTTCTG
AAGTCAACTCAAGAAAGCCGTAATATTTTTGGTCGGCTTTCAGGTGATGCTGGTGTTTGG
GAAGCAGTAGTGCGTGCCTATGAGAAGGAATACATTTTTCTTGGTGAATCCGCTCAGATT
ATGGTTCAAAATGTTAACTATGAGATCCCCTATCAAAAGAAGCAGATTCAGAAGACACAG
CAGCAATTAGCTGAGTTGGAGCGCAAGGAAGCAGATATAAAAAGAAATGCAGCTCTTTCG
GCATCTAAATATGTAGAGGCTTGTCAAGAGTTGGGCCTGCAGGGAGTAAATGTGAGGTCA
GAACTTTTGGAAACTTCCACTATATCTCTTCCAAGCACATTTAGCAGAATCTTGGAAGTA
CTTACTGGTGATTCTGTCTCACGGGCTATTGAGTTCTACTCAGAGTTCGTCAAAGATGTT
CATACGGAAAAGGATAAAACAGTAGCAGTTGTGTTATCAAATCTGAGAAGTGCTCGTGAA
AGGCCCCCAGCGATTGATGTCTCTGTTAGCACTGAAGTTCTGGAAGTTATGAATGCTCAA
GCAGGCTATCATGGCTTAAGTCAAATAACTGTAGAAACTGACACTGTAGCTGATGGGGTT
GACTGGGATATTACTTTAGATAGCTCTCAGATTGATTGGGACATTGGCACCGTGGAAGAA
ACAGAAGAAAATGGAAATGGTTTGGGTCCCTATGAGATTGTTAATGCTAGCGATATTATG
TCATCTCCTCGTAAAGATGATGTAAAATCTCATCAGACCTCAATGGAAGAAGGATTCCTT
GCTCCTGAGGTCTCTGCATCAGAAATATCTTGGAATGTAAGTGTTGACAATCCTCAAGTT
GATGTGATTGATAAATCACAAAATAATGCAGTGGAATTGCACTCTCTTCAAAATAATTTA
ACTGCCAACCCAGTAGCTATCCATGACAGGAGTCCTCTACTGGAGACAGAATACAGGAAT
AAAATACTTGATGACTTATTTGAGGTGAAAGCCTTCTTGAATCAACGGTTTATTGAGCTA
AGGAACGAAGATACTACGTCTTTACAACATCAAGTCCAGGCAGTTGCTCCACTTGTTCTG
CAGCAGTACTCTTCTGATATAATTCAGACAATGCTATCTGACGTTTCTTCAGCAATTTCA
TTGCTTACAAATAGGAAAACAAGGGATATGATCATGATCCTCAACTCCGTAAGATTTTTA
GATCGGCTGGTCAACACTTTGGAGGAGAAAAAGCGTCAGGAAGCGAAGTTAAAGGACGGA
TTGAAGGACTTGTCTAGTAAGCGTATGGAACTTCAGAATTCAATGTCTTCATCCTGGCCA
AAACAAGAAGCAGCTCTTGCCCAGACCAGGGAACTGAAGAAACTTTGTGAGAGTACACTT
TCATCCATGTTTGAAGGACGGCCGGTGAATATCATAGGAGAGATTAATACATTGTTGATT
AGTAGCTATTGTTAG

Peptide Sequence

PEP ID

Solyc03g059030.3.1
PEP Infomation

CDK5RAP3-like protein (AHRD V3.3 *** A0A061EXQ0_THECC)
Sequence

MQKEEDIRNLPIDIAFTRLGEWLVDRKRIPADWRKRLAAVRAKITTSFASLPRDIDPYFH
TLDIEGIGYLEAKKIYEILLKSTQESRNIFGRLSGDAGVWEAVVRAYEKEYIFLGESAQI
MVQNVNYEIPYQKKQIQKTQQQLAELERKEADIKRNAALSASKYVEACQELGLQGVNVRS
ELLETSTISLPSTFSRILEVLTGDSVSRAIEFYSEFVKDVHTEKDKTVAVVLSNLRSARE
RPPAIDVSVSTEVLEVMNAQAGYHGLSQITVETDTVADGVDWDITLDSSQIDWDIGTVEE
TEENGNGLGPYEIVNASDIMSSPRKDDVKSHQTSMEEGFLAPEVSASEISWNVSVDNPQV
DVIDKSQNNAVELHSLQNNLTANPVAIHDRSPLLETEYRNKILDDLFEVKAFLNQRFIEL
RNEDTTSLQHQVQAVAPLVLQQYSSDIIQTMLSDVSSAISLLTNRKTRDMIMILNSVRFL
DRLVNTLEEKKRQEAKLKDGLKDLSSKRMELQNSMSSSWPKQEAALAQTRELKKLCESTL
SSMFEGRPVNIIGEINTLLISSYC*

Transcript Sequence

Transcript ID

Solyc03g059030.3.1
Transcript Infomation

CDK5RAP3-like protein (AHRD V3.3 *** A0A061EXQ0_THECC)
Sequence

GACAATCGCGCAAGTTAGCATATCGGCCGATTTGTTTGGGGAACTCCGGTGAATATTTTT
GGGCGAAATGCAGAAGGAAGAAGATATTCGCAATCTTCCAATCGACATAGCATTCACTCG
ACTCGGAGAGTGGCTGGTTGATCGGAAAAGAATTCCGGCCGATTGGCGGAAACGACTTGC
CGCCGTTAGAGCTAAGATTACGACGTCGTTTGCCTCGCTGCCTAGAGACATTGATCCTTA
CTTCCACACTCTTGATATTGAAGGGATCGGTTATTTGGAAGCCAAAAAAATATATGAGAT
TCTTCTGAAGTCAACTCAAGAAAGCCGTAATATTTTTGGTCGGCTTTCAGGTGATGCTGG
TGTTTGGGAAGCAGTAGTGCGTGCCTATGAGAAGGAATACATTTTTCTTGGTGAATCCGC
TCAGATTATGGTTCAAAATGTTAACTATGAGATCCCCTATCAAAAGAAGCAGATTCAGAA
GACACAGCAGCAATTAGCTGAGTTGGAGCGCAAGGAAGCAGATATAAAAAGAAATGCAGC
TCTTTCGGCATCTAAATATGTAGAGGCTTGTCAAGAGTTGGGCCTGCAGGGAGTAAATGT
GAGGTCAGAACTTTTGGAAACTTCCACTATATCTCTTCCAAGCACATTTAGCAGAATCTT
GGAAGTACTTACTGGTGATTCTGTCTCACGGGCTATTGAGTTCTACTCAGAGTTCGTCAA
AGATGTTCATACGGAAAAGGATAAAACAGTAGCAGTTGTGTTATCAAATCTGAGAAGTGC
TCGTGAAAGGCCCCCAGCGATTGATGTCTCTGTTAGCACTGAAGTTCTGGAAGTTATGAA
TGCTCAAGCAGGCTATCATGGCTTAAGTCAAATAACTGTAGAAACTGACACTGTAGCTGA
TGGGGTTGACTGGGATATTACTTTAGATAGCTCTCAGATTGATTGGGACATTGGCACCGT
GGAAGAAACAGAAGAAAATGGAAATGGTTTGGGTCCCTATGAGATTGTTAATGCTAGCGA
TATTATGTCATCTCCTCGTAAAGATGATGTAAAATCTCATCAGACCTCAATGGAAGAAGG
ATTCCTTGCTCCTGAGGTCTCTGCATCAGAAATATCTTGGAATGTAAGTGTTGACAATCC
TCAAGTTGATGTGATTGATAAATCACAAAATAATGCAGTGGAATTGCACTCTCTTCAAAA
TAATTTAACTGCCAACCCAGTAGCTATCCATGACAGGAGTCCTCTACTGGAGACAGAATA
CAGGAATAAAATACTTGATGACTTATTTGAGGTGAAAGCCTTCTTGAATCAACGGTTTAT
TGAGCTAAGGAACGAAGATACTACGTCTTTACAACATCAAGTCCAGGCAGTTGCTCCACT
TGTTCTGCAGCAGTACTCTTCTGATATAATTCAGACAATGCTATCTGACGTTTCTTCAGC
AATTTCATTGCTTACAAATAGGAAAACAAGGGATATGATCATGATCCTCAACTCCGTAAG
ATTTTTAGATCGGCTGGTCAACACTTTGGAGGAGAAAAAGCGTCAGGAAGCGAAGTTAAA
GGACGGATTGAAGGACTTGTCTAGTAAGCGTATGGAACTTCAGAATTCAATGTCTTCATC
CTGGCCAAAACAAGAAGCAGCTCTTGCCCAGACCAGGGAACTGAAGAAACTTTGTGAGAG
TACACTTTCATCCATGTTTGAAGGACGGCCGGTGAATATCATAGGAGAGATTAATACATT
GTTGATTAGTAGCTATTGTTAGAAGAGGCTTGAGCAACTCTTATACATCTTGTAGTTTTT
GTTATTATTGACACTGTACAAGTTAGAAATACAGAGTTGAACCTGATGCTGGCAAAAACA
TAATCAGAATACATTTATCTTGCTTTATACTCTTAATAGACAAATAACATATCAATGCTT
TGTGCTCCCATGGAATACCAA