Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g058860.3.1
CDS Infomation

3-dehydroquinate synthase (AHRD V3.3 *** AT3G28760.2)
Sequence

ATGGATATACTTTTGCCTTCACTTTCTCATTCTTTTCCTAAATTTGCAGGTAAAAGGCAA
AACTGCAGAAAATTTCTGGGGATTAATAGGGTTGCTAGAATGTGCGCATTTACACCTTCA
AATTCGAAGAAGAAAACAGTATGGATATGGACGGAGAACAAGCAAGTAATGACAGCTGCT
GTTGAGGGAGGCTGGAATACTTTCATCTTCCCTTCCAATCGACAAGATCTTGCCCTTGAA
TGGTCTTCAATTGCAGTGATACATCCTGTCTTTATTAAAGAGGGGAGACTAATTGATCAT
GAGCATAAGAGCGTCGCTGCATTTGCTGAGATTTCTTCTCCTCAACAGTTAGAACAGTTT
CAGATATCGGAGGAACAGTCAGATAAAGTAGTTGTTAATCTACTAGATTGGCAGGTGATA
CCTGCTGAAAACATTGTTGCGGCTTTTCAAGGCACTCAGACAACTGTACTTGCTGTCTCA
AAGAACCAATCAGAAGCTCAAGCCTTTCTTGAGGCCTTGGAACACGGTTTGGGTGGTGTA
GTAATGAAGGTTGAGGATGTTGGCGCAATCCTTGAGCTGAAGGGTTATTTTGATAGAAGA
CGTGAAGTGGACAGTCTGTTGAACTTGACGAAAGCCATAATAACTCATATTCAAGTGACT
GGAATGGGTGACCGTGTCTGTGTAGATATCTGCAGCCTCATGAGACCTGGTGAAGGTCTT
CTGGTTGGATCCTTTGCAAGAGGGCTTTTCCTTGTTCACTCAGAGTGCTTGGAGTCAAAT
TACATCTCTAGCAGGCCTTTTCGAGTTAATGCGGGGCCTGTCCATGCATATGTTGCTGTT
CCTGGAGGAAAGACTAGCTATCTCTCGGAACTCAAGTCCGGGAAAGAGGTCATTGTGGTT
GATCAAAGAGGTATGCAGCGAACAGCAATTGTTGGTCGTGTAAAGGTAGAGACTAGACCA
CTGATCCTTGTGGAGGCAAAGGTAGAATCAGAAAATGAAAGCTATTCCATTCTCTTGCAG
AATGCTGAAACAGTTGGATTAGTCTCTCCCCTTCATGGTGAGGGACATCAGCGTACAACC
ATTCCTGTGACCTCACTAGAAGTTGGTTCTGAGGTATTGCTTCTACTACAGGGAGGCGCT
CGACATACTGGAATAGAAATTAAAGAGTTTATTGTTGAGAAATAA

Peptide Sequence

PEP ID

Solyc03g058860.3.1
PEP Infomation

3-dehydroquinate synthase (AHRD V3.3 *** AT3G28760.2)
Sequence

MDILLPSLSHSFPKFAGKRQNCRKFLGINRVARMCAFTPSNSKKKTVWIWTENKQVMTAA
VEGGWNTFIFPSNRQDLALEWSSIAVIHPVFIKEGRLIDHEHKSVAAFAEISSPQQLEQF
QISEEQSDKVVVNLLDWQVIPAENIVAAFQGTQTTVLAVSKNQSEAQAFLEALEHGLGGV
VMKVEDVGAILELKGYFDRRREVDSLLNLTKAIITHIQVTGMGDRVCVDICSLMRPGEGL
LVGSFARGLFLVHSECLESNYISSRPFRVNAGPVHAYVAVPGGKTSYLSELKSGKEVIVV
DQRGMQRTAIVGRVKVETRPLILVEAKVESENESYSILLQNAETVGLVSPLHGEGHQRTT
IPVTSLEVGSEVLLLLQGGARHTGIEIKEFIVEK*

Transcript Sequence

Transcript ID

Solyc03g058860.3.1
Transcript Infomation

3-dehydroquinate synthase (AHRD V3.3 *** AT3G28760.2)
Sequence

TAAGTAAATTTTTCACCCCAACTTTTGTATCTAGGAGATAAAATGGAAAGGGGCGTTTCC
GCGTGGGGACAAAAATGTAATCCTCTTACGTAAAGAAAAAAGAAGAGCAATATTTGGTTG
GTGATCAACAGCAATGGATATACTTTTGCCTTCACTTTCTCATTCTTTTCCTAAATTTGC
AGGTAAAAGGCAAAACTGCAGAAAATTTCTGGGGATTAATAGGGTTGCTAGAATGTGCGC
ATTTACACCTTCAAATTCGAAGAAGAAAACAGTATGGATATGGACGGAGAACAAGCAAGT
AATGACAGCTGCTGTTGAGGGAGGCTGGAATACTTTCATCTTCCCTTCCAATCGACAAGA
TCTTGCCCTTGAATGGTCTTCAATTGCAGTGATACATCCTGTCTTTATTAAAGAGGGGAG
ACTAATTGATCATGAGCATAAGAGCGTCGCTGCATTTGCTGAGATTTCTTCTCCTCAACA
GTTAGAACAGTTTCAGATATCGGAGGAACAGTCAGATAAAGTAGTTGTTAATCTACTAGA
TTGGCAGGTGATACCTGCTGAAAACATTGTTGCGGCTTTTCAAGGCACTCAGACAACTGT
ACTTGCTGTCTCAAAGAACCAATCAGAAGCTCAAGCCTTTCTTGAGGCCTTGGAACACGG
TTTGGGTGGTGTAGTAATGAAGGTTGAGGATGTTGGCGCAATCCTTGAGCTGAAGGGTTA
TTTTGATAGAAGACGTGAAGTGGACAGTCTGTTGAACTTGACGAAAGCCATAATAACTCA
TATTCAAGTGACTGGAATGGGTGACCGTGTCTGTGTAGATATCTGCAGCCTCATGAGACC
TGGTGAAGGTCTTCTGGTTGGATCCTTTGCAAGAGGGCTTTTCCTTGTTCACTCAGAGTG
CTTGGAGTCAAATTACATCTCTAGCAGGCCTTTTCGAGTTAATGCGGGGCCTGTCCATGC
ATATGTTGCTGTTCCTGGAGGAAAGACTAGCTATCTCTCGGAACTCAAGTCCGGGAAAGA
GGTCATTGTGGTTGATCAAAGAGGTATGCAGCGAACAGCAATTGTTGGTCGTGTAAAGGT
AGAGACTAGACCACTGATCCTTGTGGAGGCAAAGGTAGAATCAGAAAATGAAAGCTATTC
CATTCTCTTGCAGAATGCTGAAACAGTTGGATTAGTCTCTCCCCTTCATGGTGAGGGACA
TCAGCGTACAACCATTCCTGTGACCTCACTAGAAGTTGGTTCTGAGGTATTGCTTCTACT
ACAGGGAGGCGCTCGACATACTGGAATAGAAATTAAAGAGTTTATTGTTGAGAAATAAGT
TATTTTCCGCACATTCACATTCGTTGATAAATGAGTGGCCTGAACCTCTTAATGATGATA
CAAATGTATCATTTACTAAATTCTTTATTTTTGTACCAAAATGTTGTCAAATAAAACAAT
ATGGCTGACATGTTGATAAAAATCGAGGTTTTTTACTAGATAAAATCAACAAAAAATAAA
GTGAG