Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc03g046590.3.1
CDS Infomation

AUGMIN subunit 5 (AHRD V3.3 *** AUG5_ARATH)
Sequence

ATGGCGGGGTCGGTACAACCAGAAGCCATACTGGAATGGCTTCAGAAGGAGATGGGGTAC
CAACCATTAGGGTCATACGCAGCTTCAAGCAAAGCAGCAATGCCTACTATTGATTCACTT
CGCAAGATTTGCCGTGGTAATATGATACCCATTTGGAATTTTCTCTTGAATAGAGTGAAA
TCCGAGAAAACTGTTGAAAAAGTCCACCGGAATATTCTCGTACATGGAAGAGATGATGGC
AATGGAAATGGAAATGTTAATGCTGTTGATTCTGGGAGGAGTAAAGGGAGGAGGAAGGAA
AAGGTAGGGGTCGTTAGGGACAGTGGTTCGGGATCCTCTTCGAGTGTGGGGTTGGCTTCA
GCTGAGAATAGTAGGGAATTTGCTTTGCAGGAAAGAGACTTGGCAGAGAAAGAGGTGGAA
AGGCTTAGGCAGATAGTGAGACGTCAGCGGAAAGAGTTGAAGGCTAGGATGTTGGAGGTC
TCAAGGGAGGAGGCTGAGCGTAAGCGCATGCTTGACGAGAGGTCTAACTACAGGCATAAA
CAAGTAATGCTGGAGGCTTATGATCAACAGTGTGAAGAAGCTGCAAAAATATTTTCCGAG
TACCATAAACGTCTAAGTTATTATATAAACCAAGCAAGGAACGTTAAGCGATCTAGTGTT
GATTCCTCTGCTGAGGTGGTTACTACTTTTCAGGCAAATGAGAAAGATGTTTATTCGACT
TCTAAAGGAACCAAAAGTTCGGAGGATGTCATTCTCATTGAAACAACATGGGAAAGAGAT
ATCAGGAAGGCATGTGAGTGTCTTGCTATGCAAATGGCTGAAAAGATTCGCAACTCTTTT
CCTGCTTATGAAGGAAATGGAATCCATATGAATTCTTTGTTACAAGCTGCCAAGTTGGGT
ATTGACCTTGATGGTGATTTACCCGACGAAGTAAGAGATGCAATTGTCAGTTGCCTGAAA
AGTCCTCCCCAGTTGCTACAAGCAATCAATGCCTATGCTCAAAAGCTGAAGACTACAATT
ACTCGAGAAATAGAGAAAGTTGACGTTAGAGCTGATGCAGAGATTCTAAGGTACAAGTAC
GAGAATGACAGAGTAATGGATGCTTCTTCTCCTGATGTAACATCACCTTTACACTATCAA
CTTTATGGCAATGGCAAAATTGGAGGTGATACGTCTTCAAAAGGGAGTCAAAATCAACTT
CTTGAGAGACAGAAAGCACATGTTCAACAATTCTTGGCTACTGAAGATGCATTGAATAAA
GCTGCAGAAGCGAGAAAGATGAGCCAACAACTTTTAAAGCGTCTCCAAGGAACTGATGAT
GCAATCTCTACACACTCACTAGCAATTGGAGGAACATCAAAGAGTATGAGCAGCCTCAAG
CAACTTGAGTTGGAGGTCTGGACAAAGGAAAGAGAAGCAGCTGGATTAAAAGCTAGTGTG
AACACACTGATGTCTGAAATACAGCGTTTAAATAAATTGTGCGCGGAGAGAAAAGAAGCT
GAAGATTCTTTGAGAAAGAAATGGAAGAAGATTGAAGAGTTTGATGCTCGCAGATCAGAG
CTGGAATCCATTTATAGTGCCTTACTAAAGGCAAGCATGGATGCTGCAGCATTTTGGGGT
CAGCAGCCATTAGCTGCAAAGGAGTATTCATCGAGTACTATAATTCCTGCTTGTACTGTT
CTTGTAGATTTATCACACAGTGCAAAAGATCTTATTGAGCAAGAAGTTTCAGCATTTTAT
CAAACTCCTGATAATACACTTTATATGCTTCCATCAACACCCCAGGCACTATTGGAATCT
ATGGGTGTCGGTGGATCTACTGGACCAGAAGTTGTTGCTGCTGCTGAAAAGAATGCTGCT
ATATTGACGGCTAGGGCTGGTGCAAGAGATCCATCTGCAATTCCATCTATATGCCGTATT
TCTGCTGCTCTACAATATCCTGCAGGTCTGGATGCCTCTGATGCTGGCTTAGCAGCAGTT
TTAGAATCTTTGGGATTTTGTATGAAATTTCGTGGTTCTGAAGCCTCCATATTGGAAGAC
TTGGAAAAGGCAATCAATTTGGTTCACACACGGCGAGATCTTGTTGAAAGTGGTCGTGCA
TTATTAGATCATGCTAACAAGGCACAAAATGAGTATGAAAGGACGACAAACTACTGCTTA
AGTCTTGCTGCCGATCAAGAGAAGACAGCTACAGAGAATTGGCTACAGGAACTGGACGTA
GCTATTGGTAATGCTAAACATTGCCTTGACGAGGAATGCAAGTATGTTCGGGGCCTGGTA
GATGAATGGTGGGAACAACCAGCATCAACTGTAGTTGACTGGGTTACTGTTGATGGACAA
AATGTTGCTGCATGGTGGAATGATGTAAAACAGCTTATGGCATTTCATGATCAACAACTT
CGTTGA

Peptide Sequence

PEP ID

Solyc03g046590.3.1
PEP Infomation

AUGMIN subunit 5 (AHRD V3.3 *** AUG5_ARATH)
Sequence

MAGSVQPEAILEWLQKEMGYQPLGSYAASSKAAMPTIDSLRKICRGNMIPIWNFLLNRVK
SEKTVEKVHRNILVHGRDDGNGNGNVNAVDSGRSKGRRKEKVGVVRDSGSGSSSSVGLAS
AENSREFALQERDLAEKEVERLRQIVRRQRKELKARMLEVSREEAERKRMLDERSNYRHK
QVMLEAYDQQCEEAAKIFSEYHKRLSYYINQARNVKRSSVDSSAEVVTTFQANEKDVYST
SKGTKSSEDVILIETTWERDIRKACECLAMQMAEKIRNSFPAYEGNGIHMNSLLQAAKLG
IDLDGDLPDEVRDAIVSCLKSPPQLLQAINAYAQKLKTTITREIEKVDVRADAEILRYKY
ENDRVMDASSPDVTSPLHYQLYGNGKIGGDTSSKGSQNQLLERQKAHVQQFLATEDALNK
AAEARKMSQQLLKRLQGTDDAISTHSLAIGGTSKSMSSLKQLELEVWTKEREAAGLKASV
NTLMSEIQRLNKLCAERKEAEDSLRKKWKKIEEFDARRSELESIYSALLKASMDAAAFWG
QQPLAAKEYSSSTIIPACTVLVDLSHSAKDLIEQEVSAFYQTPDNTLYMLPSTPQALLES
MGVGGSTGPEVVAAAEKNAAILTARAGARDPSAIPSICRISAALQYPAGLDASDAGLAAV
LESLGFCMKFRGSEASILEDLEKAINLVHTRRDLVESGRALLDHANKAQNEYERTTNYCL
SLAADQEKTATENWLQELDVAIGNAKHCLDEECKYVRGLVDEWWEQPASTVVDWVTVDGQ
NVAAWWNDVKQLMAFHDQQLR*

Transcript Sequence

Transcript ID

Solyc03g046590.3.1
Transcript Infomation

AUGMIN subunit 5 (AHRD V3.3 *** AUG5_ARATH)
Sequence

AAAAATTTGAAATCATGGAGTAGATGGGAGCTTTTCCGGGCCGGACAGTAGGCGGCAGTA
AAACACGCGCAATGATTTGGTAACACATGGCTTTGGAGCGGGACCTTCTATTTTGAACTT
TCAGTAATTTATATTTCTTCCAATTCATAACGATAATTCTCCCACTGAGCTACAGATCCT
TGCGGCCACACTACTTCTACTCCATTATCAATCTCAGATCTGTTCATATATCCCATTTTG
GAGCAGTTCGTTTGGGGGCTATCAGTTATCTGCTCTTAATTTCAATTTTCTAGTTTGTGA
TTCTGGGTACTGGAGTGAACTAGTGCTATTTATTGGAGAATTGGAAACCCTAGGTCATGG
CGGGGTCGGTACAACCAGAAGCCATACTGGAATGGCTTCAGAAGGAGATGGGGTACCAAC
CATTAGGGTCATACGCAGCTTCAAGCAAAGCAGCAATGCCTACTATTGATTCACTTCGCA
AGATTTGCCGTGGTAATATGATACCCATTTGGAATTTTCTCTTGAATAGAGTGAAATCCG
AGAAAACTGTTGAAAAAGTCCACCGGAATATTCTCGTACATGGAAGAGATGATGGCAATG
GAAATGGAAATGTTAATGCTGTTGATTCTGGGAGGAGTAAAGGGAGGAGGAAGGAAAAGG
TAGGGGTCGTTAGGGACAGTGGTTCGGGATCCTCTTCGAGTGTGGGGTTGGCTTCAGCTG
AGAATAGTAGGGAATTTGCTTTGCAGGAAAGAGACTTGGCAGAGAAAGAGGTGGAAAGGC
TTAGGCAGATAGTGAGACGTCAGCGGAAAGAGTTGAAGGCTAGGATGTTGGAGGTCTCAA
GGGAGGAGGCTGAGCGTAAGCGCATGCTTGACGAGAGGTCTAACTACAGGCATAAACAAG
TAATGCTGGAGGCTTATGATCAACAGTGTGAAGAAGCTGCAAAAATATTTTCCGAGTACC
ATAAACGTCTAAGTTATTATATAAACCAAGCAAGGAACGTTAAGCGATCTAGTGTTGATT
CCTCTGCTGAGGTGGTTACTACTTTTCAGGCAAATGAGAAAGATGTTTATTCGACTTCTA
AAGGAACCAAAAGTTCGGAGGATGTCATTCTCATTGAAACAACATGGGAAAGAGATATCA
GGAAGGCATGTGAGTGTCTTGCTATGCAAATGGCTGAAAAGATTCGCAACTCTTTTCCTG
CTTATGAAGGAAATGGAATCCATATGAATTCTTTGTTACAAGCTGCCAAGTTGGGTATTG
ACCTTGATGGTGATTTACCCGACGAAGTAAGAGATGCAATTGTCAGTTGCCTGAAAAGTC
CTCCCCAGTTGCTACAAGCAATCAATGCCTATGCTCAAAAGCTGAAGACTACAATTACTC
GAGAAATAGAGAAAGTTGACGTTAGAGCTGATGCAGAGATTCTAAGGTACAAGTACGAGA
ATGACAGAGTAATGGATGCTTCTTCTCCTGATGTAACATCACCTTTACACTATCAACTTT
ATGGCAATGGCAAAATTGGAGGTGATACGTCTTCAAAAGGGAGTCAAAATCAACTTCTTG
AGAGACAGAAAGCACATGTTCAACAATTCTTGGCTACTGAAGATGCATTGAATAAAGCTG
CAGAAGCGAGAAAGATGAGCCAACAACTTTTAAAGCGTCTCCAAGGAACTGATGATGCAA
TCTCTACACACTCACTAGCAATTGGAGGAACATCAAAGAGTATGAGCAGCCTCAAGCAAC
TTGAGTTGGAGGTCTGGACAAAGGAAAGAGAAGCAGCTGGATTAAAAGCTAGTGTGAACA
CACTGATGTCTGAAATACAGCGTTTAAATAAATTGTGCGCGGAGAGAAAAGAAGCTGAAG
ATTCTTTGAGAAAGAAATGGAAGAAGATTGAAGAGTTTGATGCTCGCAGATCAGAGCTGG
AATCCATTTATAGTGCCTTACTAAAGGCAAGCATGGATGCTGCAGCATTTTGGGGTCAGC
AGCCATTAGCTGCAAAGGAGTATTCATCGAGTACTATAATTCCTGCTTGTACTGTTCTTG
TAGATTTATCACACAGTGCAAAAGATCTTATTGAGCAAGAAGTTTCAGCATTTTATCAAA
CTCCTGATAATACACTTTATATGCTTCCATCAACACCCCAGGCACTATTGGAATCTATGG
GTGTCGGTGGATCTACTGGACCAGAAGTTGTTGCTGCTGCTGAAAAGAATGCTGCTATAT
TGACGGCTAGGGCTGGTGCAAGAGATCCATCTGCAATTCCATCTATATGCCGTATTTCTG
CTGCTCTACAATATCCTGCAGGTCTGGATGCCTCTGATGCTGGCTTAGCAGCAGTTTTAG
AATCTTTGGGATTTTGTATGAAATTTCGTGGTTCTGAAGCCTCCATATTGGAAGACTTGG
AAAAGGCAATCAATTTGGTTCACACACGGCGAGATCTTGTTGAAAGTGGTCGTGCATTAT
TAGATCATGCTAACAAGGCACAAAATGAGTATGAAAGGACGACAAACTACTGCTTAAGTC
TTGCTGCCGATCAAGAGAAGACAGCTACAGAGAATTGGCTACAGGAACTGGACGTAGCTA
TTGGTAATGCTAAACATTGCCTTGACGAGGAATGCAAGTATGTTCGGGGCCTGGTAGATG
AATGGTGGGAACAACCAGCATCAACTGTAGTTGACTGGGTTACTGTTGATGGACAAAATG
TTGCTGCATGGTGGAATGATGTAAAACAGCTTATGGCATTTCATGATCAACAACTTCGTT
GAATCATCTCTTTGGCCAGTGTTGCATAATATCTGTAAACTTTCCTTTATCCGCTTGCTA
TTCCTTGCAACTTCATGTGGCTTTTGGTTTTCTCAAGGCTGGTATCATCTAGAAACAGCA
GTAGCAAAGCAGGTCACTGCAAATCTAGGCAGCATCTGGGCAATTTGATCGTCACCCTAG
ACCTGGGGGTGGGGGGGGGGATTGTCTTCCTCTTGTATAGTTTCAAGGCTGAAATAGTTT
CAAGGCTGAAAATGTAGGTCGAGTACAATATGTTGTTGCATTCCCTATTTGTACAGATGT
TCTTTCCGTCATTTTTTTTGGGTTATGAGAATGGGGAGAATAGCATACATATGATATAAT
AGCCTCTACACTGCTTGTGTAACGCCTTCAATCTTATAGAGATCTCTTATGCGAGTTATT
ACATAGTTATA